RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 KRT27Q7Z3Y8 459 aa20.87■□□□□ 0.93
USP39-206ENST00000448971 PLCH1Q4KWH8 1693 aa20.86■□□□□ 0.93
USP39-206ENST00000448971 CCDC9Q9Y3X0 531 aaKnown RBP20.86■□□□□ 0.93
USP39-206ENST00000448971 ANKARQ7Z5J8 1434 aa20.86■□□□□ 0.93
USP39-206ENST00000448971 ABCA3Q99758 1704 aa20.85■□□□□ 0.93
USP39-206ENST00000448971 MAPK8IP2Q13387 824 aaPredicted RBP20.85■□□□□ 0.93
USP39-206ENST00000448971 NBPF1Q3BBV0 1214 aa20.85■□□□□ 0.93
USP39-206ENST00000448971 SF3B2Q13435 895 aaKnown RBP20.84■□□□□ 0.93
USP39-206ENST00000448971 ROCK2O75116 1388 aaKnown RBP20.84■□□□□ 0.93
USP39-206ENST00000448971 MINK1Q8N4C8 1332 aaPredicted RBP20.83■□□□□ 0.93
USP39-206ENST00000448971 CNKSR2Q8WXI2 1034 aa20.82■□□□□ 0.92
USP39-206ENST00000448971 HIRIP3Q9BW71 556 aaPredicted RBP20.82■□□□□ 0.92
USP39-206ENST00000448971 BTG4Q9NY30 223 aa20.82■□□□□ 0.92
USP39-206ENST00000448971 PRR36Q9H6K5 1346 aa20.81■□□□□ 0.92
USP39-206ENST00000448971 TRPM3Q9HCF6 1732 aaPredicted RBP20.81■□□□□ 0.92
USP39-206ENST00000448971 FAM98CQ17RN3 349 aaKnown RBP20.8■□□□□ 0.92
USP39-206ENST00000448971 EIF3AQ14152 1382 aaKnown RBP20.8■□□□□ 0.92
USP39-206ENST00000448971 TULP4Q9NRJ4 1543 aa20.78■□□□□ 0.92
USP39-206ENST00000448971 ALS2Q96Q42 1657 aa20.78■□□□□ 0.92
USP39-206ENST00000448971 NRAPQ86VF7 1730 aa20.78■□□□□ 0.92
USP39-206ENST00000448971 QRICH2Q9H0J4 1663 aa20.77■□□□□ 0.92
USP39-206ENST00000448971 GPRASP1Q5JY77 1395 aa20.77■□□□□ 0.92
USP39-206ENST00000448971 WASLO00401 505 aaPredicted RBP20.77■□□□□ 0.92
USP39-206ENST00000448971 NBPF8Q3BBV2 869 aa20.77■□□□□ 0.92
USP39-206ENST00000448971 CLSPNQ9HAW4 1339 aa20.77■□□□□ 0.91
USP39-206ENST00000448971 SPATA31A5Q5VU36 1347 aa20.76■□□□□ 0.91
USP39-206ENST00000448971 SPATA31A7Q8IWB4 1347 aa20.76■□□□□ 0.91
USP39-206ENST00000448971 CENPJQ9HC77 1338 aaPredicted RBP20.76■□□□□ 0.91
USP39-206ENST00000448971 BAG6P46379 1132 aa20.75■□□□□ 0.91
USP39-206ENST00000448971 CCER1Q8TC90 406 aaPredicted RBP20.75■□□□□ 0.91
USP39-206ENST00000448971 A0A0G2JS52 829 aa20.74■□□□□ 0.91
USP39-206ENST00000448971 MYT1Q01538 1121 aa20.74■□□□□ 0.91
USP39-206ENST00000448971 COL14A1Q05707 1796 aaKnown RBP20.74■□□□□ 0.91
USP39-206ENST00000448971 FAM182BQ5T319 152 aa20.73■□□□□ 0.91
USP39-206ENST00000448971 PSDA5PKW4 1024 aaPredicted RBP20.72■□□□□ 0.91
USP39-206ENST00000448971 NGDNQ8NEJ9 315 aaKnown RBP20.72■□□□□ 0.91
USP39-206ENST00000448971 ATP7BP35670 1465 aa20.71■□□□□ 0.91
USP39-206ENST00000448971 ITSN1Q15811 1721 aa20.71■□□□□ 0.91
USP39-206ENST00000448971 EN1Q05925 392 aaPredicted RBP20.71■□□□□ 0.91
USP39-206ENST00000448971 LRP5O75197 1615 aa20.71■□□□□ 0.91
USP39-206ENST00000448971 CRYBG1Q9Y4K1 1723 aa20.7■□□□□ 0.9
USP39-206ENST00000448971 PAK3O75914 559 aaPredicted RBP20.7■□□□□ 0.9
USP39-206ENST00000448971 CARD11Q9BXL7 1154 aa20.7■□□□□ 0.9
USP39-206ENST00000448971 PRDM11Q9NQV5 511 aa20.69■□□□□ 0.9
USP39-206ENST00000448971 NUDT16Q96DE0 195 aaKnown RBP20.68■□□□□ 0.9
USP39-206ENST00000448971 TOPAZ1Q8N9V7 1692 aa20.67■□□□□ 0.9
USP39-206ENST00000448971 THSD7AQ9UPZ6 1657 aa20.67■□□□□ 0.9
USP39-206ENST00000448971 SPATA31A1Q5TZJ5 1347 aa20.66■□□□□ 0.9
USP39-206ENST00000448971 DISP2A7MBM2 1401 aa20.65■□□□□ 0.9
USP39-206ENST00000448971 KIAA0232Q92628 1395 aa20.65■□□□□ 0.9
USP39-206ENST00000448971 SRPK2P78362 688 aaKnown RBP20.65■□□□□ 0.9
USP39-206ENST00000448971 CDK19Q9BWU1 502 aa20.65■□□□□ 0.9
USP39-206ENST00000448971 RGPD1P0DJD0 1748 aa20.64■□□□□ 0.9
USP39-206ENST00000448971 CHRNA2Q15822 529 aa20.64■□□□□ 0.89
USP39-206ENST00000448971 TIMELESSQ9UNS1 1208 aa20.63■□□□□ 0.89
USP39-206ENST00000448971 ZC3H6P61129 1189 aaKnown RBP20.62■□□□□ 0.89
USP39-206ENST00000448971 R3HDM1Q15032 1099 aaKnown RBP20.62■□□□□ 0.89
USP39-206ENST00000448971 EZH2Q15910 746 aaKnown RBP20.62■□□□□ 0.89
USP39-206ENST00000448971 CAMKK2Q96RR4 588 aa20.62■□□□□ 0.89
USP39-206ENST00000448971 FAM196AQ6ZSG2 479 aa20.61■□□□□ 0.89
USP39-206ENST00000448971 POLR3AO14802 1390 aaPredicted RBP20.6■□□□□ 0.89
USP39-206ENST00000448971 EVC2Q86UK5 1308 aa20.6■□□□□ 0.89
USP39-206ENST00000448971 NUTM2GQ5VZR2 741 aa20.6■□□□□ 0.89
USP39-206ENST00000448971 STRN4Q9NRL3 753 aa20.6■□□□□ 0.89
USP39-206ENST00000448971 TNS1Q9HBL0 1735 aaKnown RBP20.6■□□□□ 0.89
USP39-206ENST00000448971 ACEP12821 1306 aa20.59■□□□□ 0.89
USP39-206ENST00000448971 PLEKHG3A1L390 1219 aa20.59■□□□□ 0.89
USP39-206ENST00000448971 TRIM37O94972 964 aa20.59■□□□□ 0.89
USP39-206ENST00000448971 CABP2Q9NPB3 220 aa20.59■□□□□ 0.89
USP39-206ENST00000448971 CCDC61Q9Y6R9 512 aa20.59■□□□□ 0.89
USP39-206ENST00000448971 BARGINQ6ZT62 677 aa20.58■□□□□ 0.89
USP39-206ENST00000448971 PPIP5K1Q6PFW1 1433 aa20.58■□□□□ 0.88
USP39-206ENST00000448971 SBNO2Q9Y2G9 1366 aa20.58■□□□□ 0.88
USP39-206ENST00000448971 PHRF1Q9P1Y6 1649 aaKnown RBP20.56■□□□□ 0.88
USP39-206ENST00000448971 APBA3O96018 575 aa20.55■□□□□ 0.88
USP39-206ENST00000448971 EVA1CP58658 441 aa20.55■□□□□ 0.88
USP39-206ENST00000448971 USP35Q9P2H5 1018 aa20.55■□□□□ 0.88
USP39-206ENST00000448971 CAMTA1Q9Y6Y1 1673 aa20.54■□□□□ 0.88
USP39-206ENST00000448971 LARP1Q6PKG0 1096 aaKnown RBP20.54■□□□□ 0.88
USP39-206ENST00000448971 ABTB2Q8N961 1025 aa20.54■□□□□ 0.88
USP39-206ENST00000448971 USP47Q96K76 1375 aa20.54■□□□□ 0.88
USP39-206ENST00000448971 SSH2Q76I76 1423 aa20.53■□□□□ 0.88
USP39-206ENST00000448971 CPDO75976 1380 aa20.53■□□□□ 0.88
USP39-206ENST00000448971 USP19O94966 1318 aa20.53■□□□□ 0.88
USP39-206ENST00000448971 PARD3Q8TEW0 1356 aa20.51■□□□□ 0.87
USP39-206ENST00000448971 PDE3BQ13370 1112 aa20.51■□□□□ 0.87
USP39-206ENST00000448971 TCP11L2Q8N4U5 519 aa20.51■□□□□ 0.87
USP39-206ENST00000448971 GCP02774 474 aa20.5■□□□□ 0.87
USP39-206ENST00000448971 NRKQ7Z2Y5 1582 aa20.49■□□□□ 0.87
USP39-206ENST00000448971 LMO7Q8WWI1 1683 aa20.48■□□□□ 0.87
USP39-206ENST00000448971 ST20-MTHFSA0A0A6YYL1 179 aa20.48■□□□□ 0.87
USP39-206ENST00000448971 NLRP13Q86W25 1043 aa20.48■□□□□ 0.87
USP39-206ENST00000448971 THRAP3Q9Y2W1 955 aaKnown RBP20.48■□□□□ 0.87
USP39-206ENST00000448971 CABP1Q9NZU7 370 aa20.47■□□□□ 0.87
USP39-206ENST00000448971 USP6P35125 1406 aa20.45■□□□□ 0.86
USP39-206ENST00000448971 RREB1Q92766 1687 aa20.45■□□□□ 0.86
USP39-206ENST00000448971 TESK2Q96S53 571 aa20.43■□□□□ 0.86
USP39-206ENST00000448971 BRD4O60885 1362 aaPredicted RBP20.43■□□□□ 0.86
USP39-206ENST00000448971 COL5A2P05997 1499 aaPredicted RBP20.43■□□□□ 0.86
USP39-206ENST00000448971 NUP188Q5SRE5 1749 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms