RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ALS2Q96Q42 1657 aa10.21□□□□□ -0.78
VPS41-208ENST00000448833 ONECUT3O60422 494 aaPredicted RBP10.2□□□□□ -0.78
VPS41-208ENST00000448833 PAK3O75914 559 aaPredicted RBP10.2□□□□□ -0.78
VPS41-208ENST00000448833 COL14A1Q05707 1796 aaKnown RBP10.2□□□□□ -0.78
VPS41-208ENST00000448833 SF3B2Q13435 895 aaKnown RBP10.2□□□□□ -0.78
VPS41-208ENST00000448833 POTEHQ6S545 545 aa10.2□□□□□ -0.78
VPS41-208ENST00000448833 RALGAPBQ86X10 1494 aa10.2□□□□□ -0.78
VPS41-208ENST00000448833 CABLES1Q8TDN4 633 aa10.2□□□□□ -0.78
VPS41-208ENST00000448833 NUDT16Q96DE0 195 aaKnown RBP10.2□□□□□ -0.78
VPS41-208ENST00000448833 CCDC61Q9Y6R9 512 aa10.2□□□□□ -0.78
VPS41-208ENST00000448833 BRWD3Q6RI45 1802 aa10.19□□□□□ -0.78
VPS41-208ENST00000448833 FAM83GA6ND36 823 aa10.19□□□□□ -0.78
VPS41-208ENST00000448833 CDK19Q9BWU1 502 aa10.19□□□□□ -0.78
VPS41-208ENST00000448833 ZRANB1Q9UGI0 708 aa10.19□□□□□ -0.78
VPS41-208ENST00000448833 GLI3P10071 1580 aa10.18□□□□□ -0.78
VPS41-208ENST00000448833 PRR36Q9H6K5 1346 aa10.18□□□□□ -0.78
VPS41-208ENST00000448833 ATP7BP35670 1465 aa10.17□□□□□ -0.78
VPS41-208ENST00000448833 PLEKHG3A1L390 1219 aa10.17□□□□□ -0.78
VPS41-208ENST00000448833 PLEKHG5O94827 1062 aa10.17□□□□□ -0.78
VPS41-208ENST00000448833 HOXD11P31277 338 aaPredicted RBP10.17□□□□□ -0.78
VPS41-208ENST00000448833 SEPT12Q8IYM1 358 aa10.17□□□□□ -0.78
VPS41-208ENST00000448833 BTG4Q9NY30 223 aa10.17□□□□□ -0.78
VPS41-208ENST00000448833 BLMP54132 1417 aaPredicted RBP10.16□□□□□ -0.78
VPS41-208ENST00000448833 BRD4O60885 1362 aaPredicted RBP10.16□□□□□ -0.78
VPS41-208ENST00000448833 NBPF8Q3BBV2 869 aa10.16□□□□□ -0.78
VPS41-208ENST00000448833 KRT27Q7Z3Y8 459 aa10.16□□□□□ -0.78
VPS41-208ENST00000448833 POLR3AO14802 1390 aaPredicted RBP10.15□□□□□ -0.78
VPS41-208ENST00000448833 ACEP12821 1306 aa10.15□□□□□ -0.78
VPS41-208ENST00000448833 CENPJQ9HC77 1338 aaPredicted RBP10.15□□□□□ -0.78
VPS41-208ENST00000448833 A0A0G2JS52 829 aa10.15□□□□□ -0.78
VPS41-208ENST00000448833 SRPK2P78362 688 aaKnown RBP10.15□□□□□ -0.78
VPS41-208ENST00000448833 MYT1Q01538 1121 aa10.15□□□□□ -0.78
VPS41-208ENST00000448833 C1QBPQ07021 282 aaKnown RBP10.15□□□□□ -0.78
VPS41-208ENST00000448833 PRDM11Q9NQV5 511 aa10.15□□□□□ -0.78
VPS41-208ENST00000448833 NRAPQ86VF7 1730 aa10.15□□□□□ -0.78
VPS41-208ENST00000448833 CRYBG1Q9Y4K1 1723 aa10.15□□□□□ -0.78
VPS41-208ENST00000448833 TOPAZ1Q8N9V7 1692 aa10.15□□□□□ -0.79
VPS41-208ENST00000448833 NBPF1Q3BBV0 1214 aa10.14□□□□□ -0.79
VPS41-208ENST00000448833 NLRP13Q86W25 1043 aa10.14□□□□□ -0.79
VPS41-208ENST00000448833 ABTB2Q8N961 1025 aa10.14□□□□□ -0.79
VPS41-208ENST00000448833 QRICH2Q9H0J4 1663 aa10.13□□□□□ -0.79
VPS41-208ENST00000448833 EVA1CP58658 441 aa10.13□□□□□ -0.79
VPS41-208ENST00000448833 SPATA31A5Q5VU36 1347 aa10.12□□□□□ -0.79
VPS41-208ENST00000448833 EVC2Q86UK5 1308 aa10.12□□□□□ -0.79
VPS41-208ENST00000448833 SPATA31A7Q8IWB4 1347 aa10.12□□□□□ -0.79
VPS41-208ENST00000448833 PHRF1Q9P1Y6 1649 aaKnown RBP10.12□□□□□ -0.79
VPS41-208ENST00000448833 FAM98CQ17RN3 349 aaKnown RBP10.12□□□□□ -0.79
VPS41-208ENST00000448833 L3MBTL2Q969R5 705 aa10.12□□□□□ -0.79
VPS41-208ENST00000448833 PPIP5K1Q6PFW1 1433 aa10.11□□□□□ -0.79
VPS41-208ENST00000448833 BAG6P46379 1132 aa10.11□□□□□ -0.79
VPS41-208ENST00000448833 ZNF692Q9BU19 519 aaPredicted RBP10.11□□□□□ -0.79
VPS41-208ENST00000448833 KIAA0232Q92628 1395 aa10.11□□□□□ -0.79
VPS41-208ENST00000448833 RGPD1P0DJD0 1748 aa10.1□□□□□ -0.79
VPS41-208ENST00000448833 C11orf95C9JLR9 678 aaPredicted RBP10.1□□□□□ -0.79
VPS41-208ENST00000448833 TRPM1Q7Z4N2 1603 aa10.1□□□□□ -0.79
VPS41-208ENST00000448833 SPATA31A1Q5TZJ5 1347 aa10.09□□□□□ -0.79
VPS41-208ENST00000448833 ZC3H6P61129 1189 aaKnown RBP10.09□□□□□ -0.79
VPS41-208ENST00000448833 NEUROD1Q13562 356 aa10.09□□□□□ -0.79
VPS41-208ENST00000448833 CABP2Q9NPB3 220 aa10.09□□□□□ -0.79
VPS41-208ENST00000448833 STRN4Q9NRL3 753 aa10.09□□□□□ -0.79
VPS41-208ENST00000448833 THRAP3Q9Y2W1 955 aaKnown RBP10.09□□□□□ -0.79
VPS41-208ENST00000448833 ROCK2O75116 1388 aaKnown RBP10.09□□□□□ -0.79
VPS41-208ENST00000448833 CPDO75976 1380 aa10.09□□□□□ -0.79
VPS41-208ENST00000448833 SLC24A1O60721 1099 aa10.08□□□□□ -0.8
VPS41-208ENST00000448833 GCP02774 474 aa10.08□□□□□ -0.8
VPS41-208ENST00000448833 NUTM2GQ5VZR2 741 aa10.08□□□□□ -0.8
VPS41-208ENST00000448833 FAM196AQ6ZSG2 479 aa10.08□□□□□ -0.8
VPS41-208ENST00000448833 BARGINQ6ZT62 677 aa10.08□□□□□ -0.8
VPS41-208ENST00000448833 CABP1Q9NZU7 370 aa10.08□□□□□ -0.8
VPS41-208ENST00000448833 SRCAPQ6ZRS2 3230 aa10.08□□□□□ -0.8
VPS41-208ENST00000448833 USP19O94966 1318 aa10.07□□□□□ -0.8
VPS41-208ENST00000448833 THSD7AQ9UPZ6 1657 aa10.07□□□□□ -0.8
VPS41-208ENST00000448833 NLRP6P59044 892 aa10.07□□□□□ -0.8
VPS41-208ENST00000448833 PDE3BQ13370 1112 aa10.07□□□□□ -0.8
VPS41-208ENST00000448833 CHRNA2Q15822 529 aa10.07□□□□□ -0.8
VPS41-208ENST00000448833 SIN3AQ96ST3 1273 aa10.07□□□□□ -0.8
VPS41-208ENST00000448833 DEFB132Q7Z7B7 95 aa10.06□□□□□ -0.8
VPS41-208ENST00000448833 KCNH5Q8NCM2 988 aa10.06□□□□□ -0.8
VPS41-208ENST00000448833 USP6P35125 1406 aa10.06□□□□□ -0.8
VPS41-208ENST00000448833 NRKQ7Z2Y5 1582 aa10.05□□□□□ -0.8
VPS41-208ENST00000448833 TCP11L2Q8N4U5 519 aa10.05□□□□□ -0.8
VPS41-208ENST00000448833 AKAP12Q02952 1782 aa10.05□□□□□ -0.8
VPS41-208ENST00000448833 SSH2Q76I76 1423 aa10.05□□□□□ -0.8
VPS41-208ENST00000448833 TTC21AQ8NDW8 1320 aa10.05□□□□□ -0.8
VPS41-208ENST00000448833 AATKQ6ZMQ8 1374 aa10.04□□□□□ -0.8
VPS41-208ENST00000448833 PARD3Q8TEW0 1356 aa10.04□□□□□ -0.8
VPS41-208ENST00000448833 LMO7Q8WWI1 1683 aa10.04□□□□□ -0.8
VPS41-208ENST00000448833 CAMTA1Q9Y6Y1 1673 aa10.04□□□□□ -0.8
VPS41-208ENST00000448833 USP35Q9P2H5 1018 aa10.04□□□□□ -0.8
VPS41-208ENST00000448833 TONSLQ96HA7 1378 aa10.03□□□□□ -0.8
VPS41-208ENST00000448833 SBNO2Q9Y2G9 1366 aa10.03□□□□□ -0.8
VPS41-208ENST00000448833 DISP2A7MBM2 1401 aa10.03□□□□□ -0.8
VPS41-208ENST00000448833 ZBTB22O15209 634 aa10.03□□□□□ -0.8
VPS41-208ENST00000448833 CDCA7Q9BWT1 371 aaPredicted RBP10.03□□□□□ -0.8
VPS41-208ENST00000448833 CARD11Q9BXL7 1154 aa10.03□□□□□ -0.8
VPS41-208ENST00000448833 CRB1P82279 1406 aa10.02□□□□□ -0.81
VPS41-208ENST00000448833 LARP1Q6PKG0 1096 aaKnown RBP10.02□□□□□ -0.81
VPS41-208ENST00000448833 PUS7Q96PZ0 661 aaKnown RBP10.02□□□□□ -0.81
VPS41-208ENST00000448833 SLIT3O75094 1523 aa10.02□□□□□ -0.81
VPS41-208ENST00000448833 TNS1Q9HBL0 1735 aaKnown RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms