RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 NKTRP30414 1462 aaKnown RBP16.77■□□□□ 0.28
COL28A1-204ENST00000444268 APAF1O14727 1248 aa16.77■□□□□ 0.27
COL28A1-204ENST00000444268 TRMT2AQ8IZ69 625 aaKnown RBP16.77■□□□□ 0.27
COL28A1-204ENST00000444268 ATP7BP35670 1465 aa16.76■□□□□ 0.27
COL28A1-204ENST00000444268 A0A1W2PP64 1363 aa16.76■□□□□ 0.27
COL28A1-204ENST00000444268 EXOC6Q8TAG9 804 aa16.76■□□□□ 0.27
COL28A1-204ENST00000444268 NUDT16Q96DE0 195 aaKnown RBP16.76■□□□□ 0.27
COL28A1-204ENST00000444268 CCDC146Q8IYE0 955 aa16.75■□□□□ 0.27
COL28A1-204ENST00000444268 CABP1Q9NZU7 370 aa16.75■□□□□ 0.27
COL28A1-204ENST00000444268 ADGRL3Q9HAR2 1447 aa16.75■□□□□ 0.27
COL28A1-204ENST00000444268 TMEM94Q12767 1356 aa16.75■□□□□ 0.27
COL28A1-204ENST00000444268 C14orf37Q86TY3 774 aa16.74■□□□□ 0.27
COL28A1-204ENST00000444268 AEBP2Q6ZN18 517 aaPredicted RBP16.74■□□□□ 0.27
COL28A1-204ENST00000444268 RUNDC1Q96C34 613 aa16.74■□□□□ 0.27
COL28A1-204ENST00000444268 IQSEC2Q5JU85 1478 aa16.73■□□□□ 0.27
COL28A1-204ENST00000444268 CD163L1Q9NR16 1453 aa16.73■□□□□ 0.27
COL28A1-204ENST00000444268 PPIP5K1Q6PFW1 1433 aa16.73■□□□□ 0.27
COL28A1-204ENST00000444268 HDGFL2Q7Z4V5 671 aaPredicted RBP16.73■□□□□ 0.27
COL28A1-204ENST00000444268 RGPD8O14715 1765 aaPredicted RBP16.73■□□□□ 0.27
COL28A1-204ENST00000444268 KIF20BQ96Q89 1820 aa16.73■□□□□ 0.27
COL28A1-204ENST00000444268 FMN2Q9NZ56 1722 aa16.72■□□□□ 0.27
COL28A1-204ENST00000444268 CDC42BPGQ6DT37 1551 aa16.72■□□□□ 0.27
COL28A1-204ENST00000444268 MTHFSP49914 203 aa16.72■□□□□ 0.27
COL28A1-204ENST00000444268 XIRP1Q702N8 1843 aaKnown RBP16.72■□□□□ 0.27
COL28A1-204ENST00000444268 DMRT2Q9Y5R5 561 aa16.72■□□□□ 0.27
COL28A1-204ENST00000444268 TOPAZ1Q8N9V7 1692 aa16.71■□□□□ 0.27
COL28A1-204ENST00000444268 LRRC7Q96NW7 1537 aa16.7■□□□□ 0.26
COL28A1-204ENST00000444268 TNNT2P45379 298 aaPredicted RBP16.69■□□□□ 0.26
COL28A1-204ENST00000444268 CCDC27Q2M243 656 aa16.69■□□□□ 0.26
COL28A1-204ENST00000444268 CCDC61Q9Y6R9 512 aa16.69■□□□□ 0.26
COL28A1-204ENST00000444268 TCERG1O14776 1098 aaKnown RBP16.68■□□□□ 0.26
COL28A1-204ENST00000444268 WWC1Q8IX03 1113 aa16.68■□□□□ 0.26
COL28A1-204ENST00000444268 WDR63Q8IWG1 891 aa16.67■□□□□ 0.26
COL28A1-204ENST00000444268 PMFBP1Q8TBY8 1022 aa16.67■□□□□ 0.26
COL28A1-204ENST00000444268 CRBNQ96SW2 442 aa16.67■□□□□ 0.26
COL28A1-204ENST00000444268 PLIN1O60240 522 aa16.66■□□□□ 0.26
COL28A1-204ENST00000444268 PHF23Q9BUL5 403 aaPredicted RBP16.66■□□□□ 0.26
COL28A1-204ENST00000444268 C19orf44Q9H6X5 657 aa16.66■□□□□ 0.26
COL28A1-204ENST00000444268 CPSF1Q10570 1443 aaKnown RBP16.65■□□□□ 0.26
COL28A1-204ENST00000444268 ANKARQ7Z5J8 1434 aa16.65■□□□□ 0.26
COL28A1-204ENST00000444268 MS4A1P11836 297 aa16.65■□□□□ 0.26
COL28A1-204ENST00000444268 ITSN1Q15811 1721 aa16.64■□□□□ 0.26
COL28A1-204ENST00000444268 ACEP12821 1306 aa16.64■□□□□ 0.26
COL28A1-204ENST00000444268 TCP11L2Q8N4U5 519 aa16.64■□□□□ 0.25
COL28A1-204ENST00000444268 PNNQ9H307 717 aaKnown RBP16.64■□□□□ 0.25
COL28A1-204ENST00000444268 COL3A1P02461 1466 aaPredicted RBP16.64■□□□□ 0.25
COL28A1-204ENST00000444268 AKAP12Q02952 1782 aa16.63■□□□□ 0.25
COL28A1-204ENST00000444268 PLEKHG3A1L390 1219 aa16.63■□□□□ 0.25
COL28A1-204ENST00000444268 FYB1O15117 783 aa16.63■□□□□ 0.25
COL28A1-204ENST00000444268 ANP32EQ9BTT0 268 aa16.63■□□□□ 0.25
COL28A1-204ENST00000444268 NCOA3Q9Y6Q9 1424 aa16.63■□□□□ 0.25
COL28A1-204ENST00000444268 U2AF1L5P0DN76 240 aaPredicted RBP16.62■□□□□ 0.25
COL28A1-204ENST00000444268 U2AF1Q01081 240 aaKnown RBP eCLIP16.62■□□□□ 0.25
COL28A1-204ENST00000444268 ORAI2Q96SN7 254 aa16.62■□□□□ 0.25
COL28A1-204ENST00000444268 MON2Q7Z3U7 1717 aa16.62■□□□□ 0.25
COL28A1-204ENST00000444268 LTBP4Q8N2S1 1624 aa16.61■□□□□ 0.25
COL28A1-204ENST00000444268 ESCO1Q5FWF5 840 aa16.61■□□□□ 0.25
COL28A1-204ENST00000444268 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.61■□□□□ 0.25
COL28A1-204ENST00000444268 GGNBP2Q9H3C7 697 aa16.61■□□□□ 0.25
COL28A1-204ENST00000444268 EDC4Q6P2E9 1401 aaKnown RBP16.61■□□□□ 0.25
COL28A1-204ENST00000444268 MSH6P52701 1360 aa16.61■□□□□ 0.25
COL28A1-204ENST00000444268 ATF3P18847 181 aa16.61■□□□□ 0.25
COL28A1-204ENST00000444268 MST1RQ04912 1400 aa16.61■□□□□ 0.25
COL28A1-204ENST00000444268 PDE3AQ14432 1141 aa16.61■□□□□ 0.25
COL28A1-204ENST00000444268 CENPQQ7L2Z9 268 aaPredicted RBP16.61■□□□□ 0.25
COL28A1-204ENST00000444268 MYH16Q9H6N6 1097 aa16.61■□□□□ 0.25
COL28A1-204ENST00000444268 SPINK5Q9NQ38 1064 aaPredicted RBP16.61■□□□□ 0.25
COL28A1-204ENST00000444268 C1orf167Q5SNV9 1468 aa16.6■□□□□ 0.25
COL28A1-204ENST00000444268 PNPLA6Q8IY17 1366 aa16.6■□□□□ 0.25
COL28A1-204ENST00000444268 DCCP43146 1447 aa16.59■□□□□ 0.25
COL28A1-204ENST00000444268 NGDNQ8NEJ9 315 aaKnown RBP16.59■□□□□ 0.25
COL28A1-204ENST00000444268 PHF8Q9UPP1 1060 aa16.59■□□□□ 0.25
COL28A1-204ENST00000444268 AAMPQ13685 434 aa16.59■□□□□ 0.25
COL28A1-204ENST00000444268 NRKQ7Z2Y5 1582 aa16.58■□□□□ 0.25
COL28A1-204ENST00000444268 MAPK8IP3Q9UPT6 1336 aa16.58■□□□□ 0.25
COL28A1-204ENST00000444268 USP6P35125 1406 aa16.58■□□□□ 0.24
COL28A1-204ENST00000444268 CT47B1P0C2W7 299 aaPredicted RBP16.58■□□□□ 0.24
COL28A1-204ENST00000444268 C20orf194Q5TEA3 1177 aa16.58■□□□□ 0.24
COL28A1-204ENST00000444268 ZRANB1Q9UGI0 708 aa16.57■□□□□ 0.24
COL28A1-204ENST00000444268 DIAPH1O60610 1272 aaKnown RBP16.56■□□□□ 0.24
COL28A1-204ENST00000444268 ANP32AP39687 249 aaKnown RBP16.56■□□□□ 0.24
COL28A1-204ENST00000444268 CADPS2Q86UW7 1296 aa16.56■□□□□ 0.24
COL28A1-204ENST00000444268 NME9Q86XW9 330 aa16.56■□□□□ 0.24
COL28A1-204ENST00000444268 ZNF692Q9BU19 519 aaPredicted RBP16.56■□□□□ 0.24
COL28A1-204ENST00000444268 KDM2BQ8NHM5 1336 aa16.56■□□□□ 0.24
COL28A1-204ENST00000444268 NEUROD2Q15784 382 aa16.56■□□□□ 0.24
COL28A1-204ENST00000444268 ERICH6Q7L0X2 663 aa16.56■□□□□ 0.24
COL28A1-204ENST00000444268 U2SURPO15042 1029 aaKnown RBP16.55■□□□□ 0.24
COL28A1-204ENST00000444268 CANXP27824 592 aaKnown RBP16.55■□□□□ 0.24
COL28A1-204ENST00000444268 XPCQ01831 940 aaPredicted RBP16.55■□□□□ 0.24
COL28A1-204ENST00000444268 SSH2Q76I76 1423 aa16.55■□□□□ 0.24
COL28A1-204ENST00000444268 TTC21BQ7Z4L5 1316 aa16.55■□□□□ 0.24
COL28A1-204ENST00000444268 FOXO3O43524 673 aa16.54■□□□□ 0.24
COL28A1-204ENST00000444268 DDX17Q92841 729 aaKnown RBP16.54■□□□□ 0.24
COL28A1-204ENST00000444268 RRP7AQ9Y3A4 280 aaKnown RBP16.54■□□□□ 0.24
COL28A1-204ENST00000444268 IL16Q14005 1332 aa16.54■□□□□ 0.24
COL28A1-204ENST00000444268 PLEKHF1Q96S99 279 aa16.54■□□□□ 0.24
COL28A1-204ENST00000444268 CDK12Q9NYV4 1490 aaPredicted RBP16.53■□□□□ 0.24
COL28A1-204ENST00000444268 BCAR3O75815 825 aa16.53■□□□□ 0.24
COL28A1-204ENST00000444268 NEFMP07197 916 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms