RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 MTHFSP49914 203 aa10.76□□□□□ -0.69
CCDC39-201ENST00000442201 NME9Q86XW9 330 aa10.76□□□□□ -0.69
CCDC39-201ENST00000442201 C19orf44Q9H6X5 657 aa10.76□□□□□ -0.69
CCDC39-201ENST00000442201 USP6P35125 1406 aa10.76□□□□□ -0.69
CCDC39-201ENST00000442201 CFAP53Q96M91 514 aa10.76□□□□□ -0.69
CCDC39-201ENST00000442201 TTC21BQ7Z4L5 1316 aa10.76□□□□□ -0.69
CCDC39-201ENST00000442201 NALCNQ8IZF0 1738 aa10.76□□□□□ -0.69
CCDC39-201ENST00000442201 INSRP06213 1382 aa10.75□□□□□ -0.69
CCDC39-201ENST00000442201 TMEM94Q12767 1356 aa10.75□□□□□ -0.69
CCDC39-201ENST00000442201 COG3Q96JB2 828 aa10.75□□□□□ -0.69
CCDC39-201ENST00000442201 FMN2Q9NZ56 1722 aa10.75□□□□□ -0.69
CCDC39-201ENST00000442201 PHF8Q9UPP1 1060 aa10.75□□□□□ -0.69
CCDC39-201ENST00000442201 ZBED9Q6R2W3 1325 aa10.75□□□□□ -0.69
CCDC39-201ENST00000442201 NCOA3Q9Y6Q9 1424 aa10.75□□□□□ -0.69
CCDC39-201ENST00000442201 MSH5O43196 834 aa10.75□□□□□ -0.69
CCDC39-201ENST00000442201 PLEKHG5O94827 1062 aa10.74□□□□□ -0.69
CCDC39-201ENST00000442201 ADAMTS8Q9UP79 889 aa10.74□□□□□ -0.69
CCDC39-201ENST00000442201 TTC21AQ8NDW8 1320 aa10.74□□□□□ -0.69
CCDC39-201ENST00000442201 ITSN1Q15811 1721 aa10.74□□□□□ -0.69
CCDC39-201ENST00000442201 DMRT2Q9Y5R5 561 aa10.74□□□□□ -0.69
CCDC39-201ENST00000442201 MON2Q7Z3U7 1717 aa10.74□□□□□ -0.69
CCDC39-201ENST00000442201 ESCO1Q5FWF5 840 aa10.73□□□□□ -0.69
CCDC39-201ENST00000442201 RBM19Q9Y4C8 960 aaKnown RBP10.73□□□□□ -0.69
CCDC39-201ENST00000442201 AKAP12Q02952 1782 aa10.73□□□□□ -0.69
CCDC39-201ENST00000442201 STRCQ7RTU9 1775 aa10.73□□□□□ -0.69
CCDC39-201ENST00000442201 ATF3P18847 181 aa10.73□□□□□ -0.69
CCDC39-201ENST00000442201 SSH2Q76I76 1423 aa10.73□□□□□ -0.69
CCDC39-201ENST00000442201 ZRANB1Q9UGI0 708 aa10.73□□□□□ -0.69
CCDC39-201ENST00000442201 KIF20BQ96Q89 1820 aa10.71□□□□□ -0.69
CCDC39-201ENST00000442201 ANKRD26Q9UPS8 1709 aa10.71□□□□□ -0.69
CCDC39-201ENST00000442201 DCCP43146 1447 aa10.71□□□□□ -0.69
CCDC39-201ENST00000442201 BLMP54132 1417 aaPredicted RBP10.71□□□□□ -0.69
CCDC39-201ENST00000442201 ZNF335Q9H4Z2 1342 aaPredicted RBP10.71□□□□□ -0.69
CCDC39-201ENST00000442201 DEKP35659 375 aaKnown RBP10.71□□□□□ -0.69
CCDC39-201ENST00000442201 CADPS2Q86UW7 1296 aa10.71□□□□□ -0.7
CCDC39-201ENST00000442201 MSH6P52701 1360 aa10.7□□□□□ -0.7
CCDC39-201ENST00000442201 AATKQ6ZMQ8 1374 aa10.7□□□□□ -0.7
CCDC39-201ENST00000442201 FANCIQ9NVI1 1328 aa10.7□□□□□ -0.7
CCDC39-201ENST00000442201 ORAI2Q96SN7 254 aa10.7□□□□□ -0.7
CCDC39-201ENST00000442201 POLKQ9UBT6 870 aa10.7□□□□□ -0.7
CCDC39-201ENST00000442201 NRKQ7Z2Y5 1582 aa10.7□□□□□ -0.7
CCDC39-201ENST00000442201 PSME1Q06323 249 aa10.7□□□□□ -0.7
CCDC39-201ENST00000442201 NUDCQ9Y266 331 aa10.7□□□□□ -0.7
CCDC39-201ENST00000442201 OVOS2A0A0J9YW53 1432 aa10.69□□□□□ -0.7
CCDC39-201ENST00000442201 OVOS2Q6IE36 1432 aa10.69□□□□□ -0.7
CCDC39-201ENST00000442201 C1orf167Q5SNV9 1468 aa10.69□□□□□ -0.7
CCDC39-201ENST00000442201 RGPD8O14715 1765 aaPredicted RBP10.69□□□□□ -0.7
CCDC39-201ENST00000442201 SENP3-EIF4A1A0A087X0R7 540 aa10.69□□□□□ -0.7
CCDC39-201ENST00000442201 PPM1GO15355 546 aaPredicted RBP10.69□□□□□ -0.7
CCDC39-201ENST00000442201 PAK3O75914 559 aaPredicted RBP10.69□□□□□ -0.7
CCDC39-201ENST00000442201 FBLN1P23142 703 aa10.69□□□□□ -0.7
CCDC39-201ENST00000442201 STRCP1A6NGW2 1772 aa10.69□□□□□ -0.7
CCDC39-201ENST00000442201 PODXL2Q9NZ53 605 aa10.68□□□□□ -0.7
CCDC39-201ENST00000442201 USP31Q70CQ4 1352 aa10.68□□□□□ -0.7
CCDC39-201ENST00000442201 PNPLA6Q8IY17 1366 aa10.68□□□□□ -0.7
CCDC39-201ENST00000442201 FOXO3O43524 673 aa10.68□□□□□ -0.7
CCDC39-201ENST00000442201 NLRP6P59044 892 aa10.68□□□□□ -0.7
CCDC39-201ENST00000442201 DIAPH1O60610 1272 aaKnown RBP10.68□□□□□ -0.7
CCDC39-201ENST00000442201 ABTB2Q8N961 1025 aa10.68□□□□□ -0.7
CCDC39-201ENST00000442201 EMILIN1Q9Y6C2 1016 aa10.68□□□□□ -0.7
CCDC39-201ENST00000442201 MST1RQ04912 1400 aa10.67□□□□□ -0.7
CCDC39-201ENST00000442201 LRRC7Q96NW7 1537 aa10.67□□□□□ -0.7
CCDC39-201ENST00000442201 U2AF1L5P0DN76 240 aaPredicted RBP10.67□□□□□ -0.7
CCDC39-201ENST00000442201 U2AF1Q01081 240 aaKnown RBP eCLIP10.67□□□□□ -0.7
CCDC39-201ENST00000442201 RRS1Q15050 365 aaKnown RBP10.67□□□□□ -0.7
CCDC39-201ENST00000442201 U2SURPO15042 1029 aaKnown RBP10.66□□□□□ -0.7
CCDC39-201ENST00000442201 CCDC146Q8IYE0 955 aa10.66□□□□□ -0.7
CCDC39-201ENST00000442201 CCDC136Q96JN2 1154 aa10.66□□□□□ -0.7
CCDC39-201ENST00000442201 SMG6Q86US8 1419 aaKnown RBP10.66□□□□□ -0.7
CCDC39-201ENST00000442201 COL3A1P02461 1466 aaPredicted RBP10.66□□□□□ -0.7
CCDC39-201ENST00000442201 SOX12O15370 315 aa10.65□□□□□ -0.7
CCDC39-201ENST00000442201 CDK12Q9NYV4 1490 aaPredicted RBP10.65□□□□□ -0.7
CCDC39-201ENST00000442201 NUTM2GQ5VZR2 741 aa10.65□□□□□ -0.7
CCDC39-201ENST00000442201 APAF1O14727 1248 aa10.64□□□□□ -0.71
CCDC39-201ENST00000442201 PDE3BQ13370 1112 aa10.64□□□□□ -0.71
CCDC39-201ENST00000442201 KRT28Q7Z3Y7 464 aa10.64□□□□□ -0.71
CCDC39-201ENST00000442201 NGEFQ8N5V2 710 aa10.64□□□□□ -0.71
CCDC39-201ENST00000442201 RUNDC1Q96C34 613 aa10.64□□□□□ -0.71
CCDC39-201ENST00000442201 XPCQ01831 940 aaPredicted RBP10.64□□□□□ -0.71
CCDC39-201ENST00000442201 SHPRHQ149N8 1683 aa10.64□□□□□ -0.71
CCDC39-201ENST00000442201 PIK3C2AO00443 1686 aa10.63□□□□□ -0.71
CCDC39-201ENST00000442201 NPHP3Q7Z494 1330 aa10.63□□□□□ -0.71
CCDC39-201ENST00000442201 KIF1AQ12756 1690 aa10.63□□□□□ -0.71
CCDC39-201ENST00000442201 PNNQ9H307 717 aaKnown RBP10.62□□□□□ -0.71
CCDC39-201ENST00000442201 MAP3K19Q56UN5 1328 aa10.62□□□□□ -0.71
CCDC39-201ENST00000442201 LMOD2Q6P5Q4 547 aa10.62□□□□□ -0.71
CCDC39-201ENST00000442201 IL13P35225 146 aa10.62□□□□□ -0.71
CCDC39-201ENST00000442201 SLAIN2Q9P270 581 aa10.62□□□□□ -0.71
CCDC39-201ENST00000442201 AMPHP49418 695 aa10.61□□□□□ -0.71
CCDC39-201ENST00000442201 TCP11L2Q8N4U5 519 aa10.61□□□□□ -0.71
CCDC39-201ENST00000442201 KCNH5Q8NCM2 988 aa10.61□□□□□ -0.71
CCDC39-201ENST00000442201 SBNO1A3KN83 1393 aa10.61□□□□□ -0.71
CCDC39-201ENST00000442201 FCHSD2O94868 740 aa10.6□□□□□ -0.71
CCDC39-201ENST00000442201 FLT4P35916 1363 aa10.6□□□□□ -0.71
CCDC39-201ENST00000442201 MAPK8IP3Q9UPT6 1336 aa10.6□□□□□ -0.71
CCDC39-201ENST00000442201 BRINP3Q76B58 766 aa10.6□□□□□ -0.71
CCDC39-201ENST00000442201 MAP2P11137 1827 aaKnown RBP10.6□□□□□ -0.71
CCDC39-201ENST00000442201 KIF24Q5T7B8 1368 aa10.6□□□□□ -0.71
CCDC39-201ENST00000442201 NEFMP07197 916 aa10.6□□□□□ -0.71
CCDC39-201ENST00000442201 HSP90AB2PQ58FF8 381 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms