RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 PCDHB3Q9Y5E6 796 aa8.06□□□□□ -1.12
PTPN4-206ENST00000441089 ST8SIA5O15466 376 aa8.05□□□□□ -1.12
PTPN4-206ENST00000441089 S1PR4O95977 384 aa8.05□□□□□ -1.12
PTPN4-206ENST00000441089 PLA2G2CQ5R387 149 aa8.05□□□□□ -1.12
PTPN4-206ENST00000441089 SPRYD3Q8NCJ5 442 aa8.05□□□□□ -1.12
PTPN4-206ENST00000441089 PTPRKQ15262 1439 aa8.04□□□□□ -1.12
PTPN4-206ENST00000441089 CPS1P31327 1500 aa8.04□□□□□ -1.12
PTPN4-206ENST00000441089 TNFRSF10AO00220 468 aa8.04□□□□□ -1.12
PTPN4-206ENST00000441089 GDF9O60383 454 aa8.04□□□□□ -1.12
PTPN4-206ENST00000441089 HDGFP51858 240 aaKnown RBP8.04□□□□□ -1.12
PTPN4-206ENST00000441089 PLA2R1Q13018 1463 aa8.04□□□□□ -1.12
PTPN4-206ENST00000441089 SCAPERQ9BY12 1400 aa8.03□□□□□ -1.12
PTPN4-206ENST00000441089 RAPGEF6Q8TEU7 1601 aa8.03□□□□□ -1.12
PTPN4-206ENST00000441089 PRR20EP86478 221 aa8.03□□□□□ -1.12
PTPN4-206ENST00000441089 PRR20CP86479 221 aa8.03□□□□□ -1.12
PTPN4-206ENST00000441089 PRR20DP86480 221 aa8.03□□□□□ -1.12
PTPN4-206ENST00000441089 PRR20BP86481 221 aa8.03□□□□□ -1.12
PTPN4-206ENST00000441089 PRR20AP86496 221 aa8.03□□□□□ -1.12
PTPN4-206ENST00000441089 PKDCCQ504Y2 493 aa8.03□□□□□ -1.12
PTPN4-206ENST00000441089 ZNF598Q86UK7 904 aaKnown RBP8.03□□□□□ -1.12
PTPN4-206ENST00000441089 NPATQ14207 1427 aa8.03□□□□□ -1.12
PTPN4-206ENST00000441089 CNTLNQ9NXG0 1405 aa8.03□□□□□ -1.12
PTPN4-206ENST00000441089 REREQ9P2R6 1566 aa8.02□□□□□ -1.13
PTPN4-206ENST00000441089 PLEKHD1A6NEE1 506 aa8.02□□□□□ -1.13
PTPN4-206ENST00000441089 AGLP35573 1532 aa8.02□□□□□ -1.13
PTPN4-206ENST00000441089 ZNF142P52746 1687 aaPredicted RBP8.02□□□□□ -1.13
PTPN4-206ENST00000441089 FAM187AA6NFU0 413 aa8.01□□□□□ -1.13
PTPN4-206ENST00000441089 DGAT1O75907 488 aa8.01□□□□□ -1.13
PTPN4-206ENST00000441089 FAM161AQ3B820 660 aa8.01□□□□□ -1.13
PTPN4-206ENST00000441089 ZNF697Q5TEC3 545 aa8.01□□□□□ -1.13
PTPN4-206ENST00000441089 RGS17Q9UGC6 210 aaPredicted RBP8.01□□□□□ -1.13
PTPN4-206ENST00000441089 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.01□□□□□ -1.13
PTPN4-206ENST00000441089 MROH2AA6NES4 1674 aa8.01□□□□□ -1.13
PTPN4-206ENST00000441089 TCOF1Q13428 1488 aaKnown RBP8□□□□□ -1.13
PTPN4-206ENST00000441089 MLLT3P42568 568 aaPredicted RBP8□□□□□ -1.13
PTPN4-206ENST00000441089 ANKLE1Q8NAG6 615 aa8□□□□□ -1.13
PTPN4-206ENST00000441089 DACH1Q9UI36 760 aa8□□□□□ -1.13
PTPN4-206ENST00000441089 AAASQ9NRG9 546 aa7.99□□□□□ -1.13
PTPN4-206ENST00000441089 ZNF518AQ6AHZ1 1483 aa7.99□□□□□ -1.13
PTPN4-206ENST00000441089 SLC10A3P09131 477 aa7.98□□□□□ -1.13
PTPN4-206ENST00000441089 PAXIP1Q6ZW49 1069 aaPredicted RBP7.98□□□□□ -1.13
PTPN4-206ENST00000441089 SHANK2Q9UPX8 1470 aa7.98□□□□□ -1.13
PTPN4-206ENST00000441089 SETD1AO15047 1707 aaKnown RBP7.98□□□□□ -1.13
PTPN4-206ENST00000441089 POLR1AO95602 1720 aaPredicted RBP7.98□□□□□ -1.13
PTPN4-206ENST00000441089 DIP2CQ9Y2E4 1556 aa7.97□□□□□ -1.13
PTPN4-206ENST00000441089 MYO3AQ8NEV4 1616 aa7.97□□□□□ -1.13
PTPN4-206ENST00000441089 NECTIN2Q92692 538 aa7.97□□□□□ -1.13
PTPN4-206ENST00000441089 CFAP44Q96MT7 982 aa7.97□□□□□ -1.13
PTPN4-206ENST00000441089 TMEM134Q9H6X4 195 aa7.97□□□□□ -1.13
PTPN4-206ENST00000441089 PKD2L1Q9P0L9 805 aa7.97□□□□□ -1.13
PTPN4-206ENST00000441089 NUP153P49790 1475 aaKnown RBP7.97□□□□□ -1.13
PTPN4-206ENST00000441089 KDM5CP41229 1560 aa7.97□□□□□ -1.13
PTPN4-206ENST00000441089 CEP170BQ9Y4F5 1589 aaPredicted RBP7.97□□□□□ -1.13
PTPN4-206ENST00000441089 PLCH2O75038 1416 aa7.96□□□□□ -1.13
PTPN4-206ENST00000441089 MYO5CQ9NQX4 1742 aa7.96□□□□□ -1.14
PTPN4-206ENST00000441089 ACTN4O43707 911 aaKnown RBP7.96□□□□□ -1.14
PTPN4-206ENST00000441089 EFCAB2Q5VUJ9 269 aa7.96□□□□□ -1.14
PTPN4-206ENST00000441089 POTEAQ6S8J7 498 aa7.96□□□□□ -1.14
PTPN4-206ENST00000441089 TREML4Q6UXN2 200 aa7.96□□□□□ -1.14
PTPN4-206ENST00000441089 P3H3Q8IVL6 736 aa7.96□□□□□ -1.14
PTPN4-206ENST00000441089 ADGRG1Q9Y653 693 aa7.96□□□□□ -1.14
PTPN4-206ENST00000441089 CFHP08603 1231 aa7.95□□□□□ -1.14
PTPN4-206ENST00000441089 ALKQ9UM73 1620 aa7.95□□□□□ -1.14
PTPN4-206ENST00000441089 SAMD9Q5K651 1589 aa7.94□□□□□ -1.14
PTPN4-206ENST00000441089 ABCA6Q8N139 1617 aa7.94□□□□□ -1.14
PTPN4-206ENST00000441089 DNAJB2P25686 324 aa7.94□□□□□ -1.14
PTPN4-206ENST00000441089 PTGDRQ13258 359 aa7.94□□□□□ -1.14
PTPN4-206ENST00000441089 RNF17Q9BXT8 1623 aaKnown RBP7.93□□□□□ -1.14
PTPN4-206ENST00000441089 RCCD1A6NED2 376 aa7.93□□□□□ -1.14
PTPN4-206ENST00000441089 ADH1BP00325 375 aa7.93□□□□□ -1.14
PTPN4-206ENST00000441089 LCE2CQ5TA81 110 aa7.93□□□□□ -1.14
PTPN4-206ENST00000441089 PRR14Q9BWN1 585 aa7.93□□□□□ -1.14
PTPN4-206ENST00000441089 ZMYM3Q14202 1370 aa7.93□□□□□ -1.14
PTPN4-206ENST00000441089 MLH3Q9UHC1 1453 aa7.93□□□□□ -1.14
PTPN4-206ENST00000441089 FOXC1Q12948 553 aa7.91□□□□□ -1.14
PTPN4-206ENST00000441089 PUS10Q3MIT2 529 aaKnown RBP7.91□□□□□ -1.14
PTPN4-206ENST00000441089 AFAP1Q8N556 730 aa7.91□□□□□ -1.14
PTPN4-206ENST00000441089 WDR70Q9NW82 654 aa7.91□□□□□ -1.14
PTPN4-206ENST00000441089 VWDEQ8N2E2 1590 aa7.9□□□□□ -1.14
PTPN4-206ENST00000441089 SLC6A16Q9GZN6 736 aa7.9□□□□□ -1.14
PTPN4-206ENST00000441089 CLTCQ00610 1675 aaKnown RBP7.89□□□□□ -1.15
PTPN4-206ENST00000441089 DNMT1P26358 1616 aaKnown RBP7.89□□□□□ -1.15
PTPN4-206ENST00000441089 SYNMO15061 1565 aa7.89□□□□□ -1.15
PTPN4-206ENST00000441089 NEURL4Q96JN8 1562 aa7.89□□□□□ -1.15
PTPN4-206ENST00000441089 A2ML1A8K2U0 1454 aa7.89□□□□□ -1.15
PTPN4-206ENST00000441089 GMPR2Q9P2T1 348 aaKnown RBP7.89□□□□□ -1.15
PTPN4-206ENST00000441089 SLC4A3P48751 1232 aa7.88□□□□□ -1.15
PTPN4-206ENST00000441089 KMT5BQ4FZB7 885 aa7.88□□□□□ -1.15
PTPN4-206ENST00000441089 SCUBE3Q8IX30 993 aa7.88□□□□□ -1.15
PTPN4-206ENST00000441089 ARHGAP5Q13017 1502 aa7.88□□□□□ -1.15
PTPN4-206ENST00000441089 KIDINS220Q9ULH0 1771 aa7.87□□□□□ -1.15
PTPN4-206ENST00000441089 ANKLE2Q86XL3 938 aa7.87□□□□□ -1.15
PTPN4-206ENST00000441089 RBM46Q8TBY0 533 aaKnown RBP7.87□□□□□ -1.15
PTPN4-206ENST00000441089 TOR4AQ9NXH8 423 aa7.87□□□□□ -1.15
PTPN4-206ENST00000441089 LRRC7Q96NW7 1537 aa7.87□□□□□ -1.15
PTPN4-206ENST00000441089 PRXQ9BXM0 1461 aa7.87□□□□□ -1.15
PTPN4-206ENST00000441089 CRIPAKQ8N1N5 446 aa7.86□□□□□ -1.15
PTPN4-206ENST00000441089 DEPDC5O75140 1603 aa7.85□□□□□ -1.15
PTPN4-206ENST00000441089 STRCP1A6NGW2 1772 aa7.85□□□□□ -1.15
PTPN4-206ENST00000441089 NR1I2O75469 434 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms