RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 PLIN1O60240 522 aa11.19□□□□□ -0.62
HPS4-206ENST00000439453 SLC4A3P48751 1232 aa11.19□□□□□ -0.62
HPS4-206ENST00000439453 CDCA7LQ96GN5 454 aa11.19□□□□□ -0.62
HPS4-206ENST00000439453 CRBNQ96SW2 442 aa11.19□□□□□ -0.62
HPS4-206ENST00000439453 DAXXQ9UER7 740 aaPredicted RBP11.19□□□□□ -0.62
HPS4-206ENST00000439453 TULP4Q9NRJ4 1543 aa11.19□□□□□ -0.62
HPS4-206ENST00000439453 ITSN1Q15811 1721 aa11.19□□□□□ -0.62
HPS4-206ENST00000439453 CARD11Q9BXL7 1154 aa11.18□□□□□ -0.62
HPS4-206ENST00000439453 C19orf44Q9H6X5 657 aa11.18□□□□□ -0.62
HPS4-206ENST00000439453 C1orf167Q5SNV9 1468 aa11.18□□□□□ -0.62
HPS4-206ENST00000439453 KIF1AQ12756 1690 aa11.18□□□□□ -0.62
HPS4-206ENST00000439453 SHPRHQ149N8 1683 aa11.17□□□□□ -0.62
HPS4-206ENST00000439453 NLRP13Q86W25 1043 aa11.17□□□□□ -0.62
HPS4-206ENST00000439453 TRPM3Q9HCF6 1732 aaPredicted RBP11.17□□□□□ -0.62
HPS4-206ENST00000439453 PRAM1Q96QH2 718 aa11.16□□□□□ -0.62
HPS4-206ENST00000439453 ST20-MTHFSA0A0A6YYL1 179 aa11.16□□□□□ -0.62
HPS4-206ENST00000439453 TOM1O60784 492 aa11.16□□□□□ -0.62
HPS4-206ENST00000439453 TRAK1Q9UPV9 953 aa11.16□□□□□ -0.62
HPS4-206ENST00000439453 ATP7BP35670 1465 aa11.15□□□□□ -0.62
HPS4-206ENST00000439453 SLAIN2Q9P270 581 aa11.15□□□□□ -0.62
HPS4-206ENST00000439453 CRYBG1Q9Y4K1 1723 aa11.15□□□□□ -0.63
HPS4-206ENST00000439453 PARD3Q8TEW0 1356 aa11.15□□□□□ -0.63
HPS4-206ENST00000439453 ABCA3Q99758 1704 aa11.14□□□□□ -0.63
HPS4-206ENST00000439453 KDM2BQ8NHM5 1336 aa11.14□□□□□ -0.63
HPS4-206ENST00000439453 PIP4K2BP78356 416 aa11.14□□□□□ -0.63
HPS4-206ENST00000439453 PXDNQ92626 1479 aa11.13□□□□□ -0.63
HPS4-206ENST00000439453 AKAP12Q02952 1782 aa11.13□□□□□ -0.63
HPS4-206ENST00000439453 BRINP3Q76B58 766 aa11.13□□□□□ -0.63
HPS4-206ENST00000439453 CADPS2Q86UW7 1296 aa11.13□□□□□ -0.63
HPS4-206ENST00000439453 COL22A1Q8NFW1 1626 aaPredicted RBP11.13□□□□□ -0.63
HPS4-206ENST00000439453 ALS2Q96Q42 1657 aa11.13□□□□□ -0.63
HPS4-206ENST00000439453 HSPA1LP34931 641 aa11.13□□□□□ -0.63
HPS4-206ENST00000439453 FAM161AQ3B820 660 aa11.12□□□□□ -0.63
HPS4-206ENST00000439453 FRAT2O75474 233 aaPredicted RBP11.12□□□□□ -0.63
HPS4-206ENST00000439453 PRR36Q9H6K5 1346 aa11.12□□□□□ -0.63
HPS4-206ENST00000439453 CENPQQ7L2Z9 268 aaPredicted RBP11.12□□□□□ -0.63
HPS4-206ENST00000439453 FAM43AQ8N2R8 423 aa11.12□□□□□ -0.63
HPS4-206ENST00000439453 ANKARQ7Z5J8 1434 aa11.11□□□□□ -0.63
HPS4-206ENST00000439453 MARF1Q9Y4F3 1742 aaKnown RBP11.11□□□□□ -0.63
HPS4-206ENST00000439453 RSPH6AQ9H0K4 717 aa11.11□□□□□ -0.63
HPS4-206ENST00000439453 MYOM1P52179 1685 aa11.11□□□□□ -0.63
HPS4-206ENST00000439453 C8orf34Q49A92 452 aa11.11□□□□□ -0.63
HPS4-206ENST00000439453 C20orf194Q5TEA3 1177 aa11.11□□□□□ -0.63
HPS4-206ENST00000439453 BLMP54132 1417 aaPredicted RBP11.11□□□□□ -0.63
HPS4-206ENST00000439453 NRKQ7Z2Y5 1582 aa11.11□□□□□ -0.63
HPS4-206ENST00000439453 SAFB2Q14151 953 aaKnown RBP eCLIP11.11□□□□□ -0.63
HPS4-206ENST00000439453 INSRP06213 1382 aa11.11□□□□□ -0.63
HPS4-206ENST00000439453 ATF3P18847 181 aa11.1□□□□□ -0.63
HPS4-206ENST00000439453 C14orf37Q86TY3 774 aa11.1□□□□□ -0.63
HPS4-206ENST00000439453 ORAI2Q96SN7 254 aa11.1□□□□□ -0.63
HPS4-206ENST00000439453 SBNO2Q9Y2G9 1366 aa11.09□□□□□ -0.63
HPS4-206ENST00000439453 MON2Q7Z3U7 1717 aa11.09□□□□□ -0.63
HPS4-206ENST00000439453 MED1Q15648 1581 aaPredicted RBP11.09□□□□□ -0.63
HPS4-206ENST00000439453 MINK1Q8N4C8 1332 aaPredicted RBP11.09□□□□□ -0.63
HPS4-206ENST00000439453 DDX17Q92841 729 aaKnown RBP11.08□□□□□ -0.64
HPS4-206ENST00000439453 PER1O15534 1290 aaPredicted RBP11.08□□□□□ -0.64
HPS4-206ENST00000439453 CENPJQ9HC77 1338 aaPredicted RBP11.08□□□□□ -0.64
HPS4-206ENST00000439453 WASLO00401 505 aaPredicted RBP11.07□□□□□ -0.64
HPS4-206ENST00000439453 LRP6O75581 1613 aa11.07□□□□□ -0.64
HPS4-206ENST00000439453 POGKQ9P215 609 aa11.06□□□□□ -0.64
HPS4-206ENST00000439453 TESK2Q96S53 571 aa11.06□□□□□ -0.64
HPS4-206ENST00000439453 CC2D1BQ5T0F9 858 aaKnown RBP11.06□□□□□ -0.64
HPS4-206ENST00000439453 SOS2Q07890 1332 aaPredicted RBP11.06□□□□□ -0.64
HPS4-206ENST00000439453 USP54Q70EL1 1684 aa11.05□□□□□ -0.64
HPS4-206ENST00000439453 CD163L1Q9NR16 1453 aa11.05□□□□□ -0.64
HPS4-206ENST00000439453 NUTM2FA1L443 756 aa11.05□□□□□ -0.64
HPS4-206ENST00000439453 PHRF1Q9P1Y6 1649 aaKnown RBP11.05□□□□□ -0.64
HPS4-206ENST00000439453 EIF3AQ14152 1382 aaKnown RBP11.04□□□□□ -0.64
HPS4-206ENST00000439453 RGS3P49796 1198 aa11.04□□□□□ -0.64
HPS4-206ENST00000439453 PIK3C2AO00443 1686 aa11.04□□□□□ -0.64
HPS4-206ENST00000439453 CDK19Q9BWU1 502 aa11.03□□□□□ -0.64
HPS4-206ENST00000439453 POLR3AO14802 1390 aaPredicted RBP11.03□□□□□ -0.64
HPS4-206ENST00000439453 PNPLA6Q8IY17 1366 aa11.02□□□□□ -0.64
HPS4-206ENST00000439453 DUSP27Q5VZP5 1158 aa11.02□□□□□ -0.65
HPS4-206ENST00000439453 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.02□□□□□ -0.65
HPS4-206ENST00000439453 DISP3Q9P2K9 1392 aa11.02□□□□□ -0.65
HPS4-206ENST00000439453 ESCO1Q5FWF5 840 aa11.02□□□□□ -0.65
HPS4-206ENST00000439453 SSH2Q76I76 1423 aa11.01□□□□□ -0.65
HPS4-206ENST00000439453 ADAMTS8Q9UP79 889 aa11.01□□□□□ -0.65
HPS4-206ENST00000439453 NUDT16Q96DE0 195 aaKnown RBP11.01□□□□□ -0.65
HPS4-206ENST00000439453 PANK3Q9H999 370 aa11.01□□□□□ -0.65
HPS4-206ENST00000439453 PPIP5K1Q6PFW1 1433 aa11.01□□□□□ -0.65
HPS4-206ENST00000439453 JCADQ9P266 1359 aa11□□□□□ -0.65
HPS4-206ENST00000439453 CABP2Q9NPB3 220 aa11□□□□□ -0.65
HPS4-206ENST00000439453 PHF8Q9UPP1 1060 aa11□□□□□ -0.65
HPS4-206ENST00000439453 CPSF1Q10570 1443 aaKnown RBP11□□□□□ -0.65
HPS4-206ENST00000439453 PLCH1Q4KWH8 1693 aa10.99□□□□□ -0.65
HPS4-206ENST00000439453 TNS3Q68CZ2 1445 aa10.99□□□□□ -0.65
HPS4-206ENST00000439453 VIRMAQ69YN4 1812 aaKnown RBP10.99□□□□□ -0.65
HPS4-206ENST00000439453 RRAGDQ9NQL2 400 aaPredicted RBP10.99□□□□□ -0.65
HPS4-206ENST00000439453 USP19O94966 1318 aa10.99□□□□□ -0.65
HPS4-206ENST00000439453 FOXO3O43524 673 aa10.99□□□□□ -0.65
HPS4-206ENST00000439453 PLEKHG3A1L390 1219 aa10.98□□□□□ -0.65
HPS4-206ENST00000439453 GOLGA2Q08379 1002 aa10.98□□□□□ -0.65
HPS4-206ENST00000439453 L1TD1Q5T7N2 865 aaKnown RBP10.98□□□□□ -0.65
HPS4-206ENST00000439453 PMFBP1Q8TBY8 1022 aa10.98□□□□□ -0.65
HPS4-206ENST00000439453 SBNO1A3KN83 1393 aa10.98□□□□□ -0.65
HPS4-206ENST00000439453 NPHP3Q7Z494 1330 aa10.98□□□□□ -0.65
HPS4-206ENST00000439453 NRAPQ86VF7 1730 aa10.98□□□□□ -0.65
HPS4-206ENST00000439453 XPCQ01831 940 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms