RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ZNF521Q96K83 1311 aa12.36□□□□□ -0.43
CUX1-206ENST00000437600 TCP11L2Q8N4U5 519 aa12.35□□□□□ -0.43
CUX1-206ENST00000437600 TNNQ9UQP3 1299 aa12.35□□□□□ -0.43
CUX1-206ENST00000437600 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.35□□□□□ -0.43
CUX1-206ENST00000437600 U2AF1L5P0DN76 240 aaPredicted RBP12.35□□□□□ -0.43
CUX1-206ENST00000437600 ANP32AP39687 249 aaKnown RBP12.35□□□□□ -0.43
CUX1-206ENST00000437600 U2AF1Q01081 240 aaKnown RBP eCLIP12.35□□□□□ -0.435e-6■□□□□ 11.2
CUX1-206ENST00000437600 WWC1Q8IX03 1113 aa12.35□□□□□ -0.43
CUX1-206ENST00000437600 U2SURPO15042 1029 aaKnown RBP12.34□□□□□ -0.43
CUX1-206ENST00000437600 FYB1O15117 783 aa12.34□□□□□ -0.43
CUX1-206ENST00000437600 PANK1Q8TE04 598 aa12.34□□□□□ -0.43
CUX1-206ENST00000437600 CLUAP1Q96AJ1 413 aa12.34□□□□□ -0.43
CUX1-206ENST00000437600 TERF2IPQ9NYB0 399 aa12.34□□□□□ -0.43
CUX1-206ENST00000437600 NOP58Q9Y2X3 529 aaKnown RBP12.34□□□□□ -0.43
CUX1-206ENST00000437600 ZRANB1Q9UGI0 708 aa12.33□□□□□ -0.44
CUX1-206ENST00000437600 SLC4A3P48751 1232 aa12.33□□□□□ -0.44
CUX1-206ENST00000437600 COG6Q9Y2V7 657 aa12.33□□□□□ -0.44
CUX1-206ENST00000437600 HDGFL2Q7Z4V5 671 aaPredicted RBP12.32□□□□□ -0.44
CUX1-206ENST00000437600 C14orf37Q86TY3 774 aa12.32□□□□□ -0.44
CUX1-206ENST00000437600 ZBTB47Q9UFB7 747 aaPredicted RBP12.32□□□□□ -0.44
CUX1-206ENST00000437600 RGPD8O14715 1765 aaPredicted RBP12.32□□□□□ -0.44
CUX1-206ENST00000437600 ATAD2Q6PL18 1390 aa12.32□□□□□ -0.44
CUX1-206ENST00000437600 CHD2O14647 1828 aaKnown RBP12.32□□□□□ -0.44
CUX1-206ENST00000437600 CPS1P31327 1500 aa12.32□□□□□ -0.44
CUX1-206ENST00000437600 WASLO00401 505 aaPredicted RBP12.32□□□□□ -0.44
CUX1-206ENST00000437600 CANXP27824 592 aaKnown RBP12.32□□□□□ -0.44
CUX1-206ENST00000437600 IPO9Q96P70 1041 aaKnown RBP12.32□□□□□ -0.44
CUX1-206ENST00000437600 KNDC1Q76NI1 1749 aa12.31□□□□□ -0.44
CUX1-206ENST00000437600 PRR36Q9H6K5 1346 aa12.31□□□□□ -0.44
CUX1-206ENST00000437600 STRCQ7RTU9 1775 aa12.3□□□□□ -0.44
CUX1-206ENST00000437600 PMFBP1Q8TBY8 1022 aa12.3□□□□□ -0.44
CUX1-206ENST00000437600 NUDT16Q96DE0 195 aaKnown RBP12.3□□□□□ -0.44
CUX1-206ENST00000437600 BACH2Q9BYV9 841 aa12.3□□□□□ -0.44
CUX1-206ENST00000437600 DLC1Q96QB1 1528 aa12.3□□□□□ -0.44
CUX1-206ENST00000437600 TECPR2O15040 1411 aa12.3□□□□□ -0.44
CUX1-206ENST00000437600 TCERG1O14776 1098 aaKnown RBP12.3□□□□□ -0.44
CUX1-206ENST00000437600 SOX12O15370 315 aa12.3□□□□□ -0.44
CUX1-206ENST00000437600 CD163L1Q9NR16 1453 aa12.3□□□□□ -0.44
CUX1-206ENST00000437600 NME9Q86XW9 330 aa12.29□□□□□ -0.44
CUX1-206ENST00000437600 LAS1LQ9Y4W2 734 aaKnown RBP12.29□□□□□ -0.44
CUX1-206ENST00000437600 IGHDP01880 384 aa12.29□□□□□ -0.44
CUX1-206ENST00000437600 TSR2Q969E8 191 aaKnown RBP12.29□□□□□ -0.44
CUX1-206ENST00000437600 XRN1Q8IZH2 1706 aaKnown RBP12.29□□□□□ -0.44
CUX1-206ENST00000437600 E9PSI1 815 aa12.29□□□□□ -0.44
CUX1-206ENST00000437600 DEKP35659 375 aaKnown RBP12.29□□□□□ -0.44
CUX1-206ENST00000437600 TRMT2AQ8IZ69 625 aaKnown RBP12.29□□□□□ -0.44
CUX1-206ENST00000437600 STRCP1A6NGW2 1772 aa12.29□□□□□ -0.44
CUX1-206ENST00000437600 CFAP53Q96M91 514 aa12.28□□□□□ -0.44
CUX1-206ENST00000437600 PUS7Q96PZ0 661 aaKnown RBP12.28□□□□□ -0.44
CUX1-206ENST00000437600 POLR3AO14802 1390 aaPredicted RBP12.28□□□□□ -0.44
CUX1-206ENST00000437600 FAM135BQ49AJ0 1406 aa12.28□□□□□ -0.44
CUX1-206ENST00000437600 DIP2AQ14689 1571 aa12.27□□□□□ -0.44
CUX1-206ENST00000437600 PROSER2Q86WR7 435 aaPredicted RBP12.27□□□□□ -0.45
CUX1-206ENST00000437600 RUNDC1Q96C34 613 aa12.27□□□□□ -0.45
CUX1-206ENST00000437600 ZNF335Q9H4Z2 1342 aaPredicted RBP12.27□□□□□ -0.45
CUX1-206ENST00000437600 PPIP5K1Q6PFW1 1433 aa12.27□□□□□ -0.45
CUX1-206ENST00000437600 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.27□□□□□ -0.45
CUX1-206ENST00000437600 NALCNQ8IZF0 1738 aa12.26□□□□□ -0.45
CUX1-206ENST00000437600 RLBP1P12271 317 aa12.26□□□□□ -0.45
CUX1-206ENST00000437600 CCDC61Q9Y6R9 512 aa12.26□□□□□ -0.45
CUX1-206ENST00000437600 RRS1Q15050 365 aaKnown RBP12.25□□□□□ -0.45
CUX1-206ENST00000437600 EMILIN1Q9Y6C2 1016 aa12.25□□□□□ -0.45
CUX1-206ENST00000437600 PTCH1Q13635 1447 aa12.25□□□□□ -0.45
CUX1-206ENST00000437600 ATP7BP35670 1465 aa12.24□□□□□ -0.45
CUX1-206ENST00000437600 KDM2BQ8NHM5 1336 aa12.24□□□□□ -0.45
CUX1-206ENST00000437600 NINLQ9Y2I6 1382 aa12.23□□□□□ -0.45
CUX1-206ENST00000437600 XPCQ01831 940 aaPredicted RBP12.23□□□□□ -0.45
CUX1-206ENST00000437600 HMOX1P09601 288 aa12.23□□□□□ -0.45
CUX1-206ENST00000437600 SIRT1Q96EB6 747 aa12.23□□□□□ -0.45
CUX1-206ENST00000437600 USP32Q8NFA0 1604 aa12.23□□□□□ -0.45
CUX1-206ENST00000437600 RARSP54136 660 aaKnown RBP12.22□□□□□ -0.45
CUX1-206ENST00000437600 NKTRP30414 1462 aaKnown RBP12.22□□□□□ -0.45
CUX1-206ENST00000437600 POLKQ9UBT6 870 aa12.22□□□□□ -0.45
CUX1-206ENST00000437600 NSD2O96028 1365 aa12.22□□□□□ -0.45
CUX1-206ENST00000437600 PIK3R4Q99570 1358 aa12.22□□□□□ -0.45
CUX1-206ENST00000437600 ACEP12821 1306 aa12.22□□□□□ -0.45
CUX1-206ENST00000437600 NUTM2GQ5VZR2 741 aa12.21□□□□□ -0.45
CUX1-206ENST00000437600 CENPQQ7L2Z9 268 aaPredicted RBP12.21□□□□□ -0.45
CUX1-206ENST00000437600 TMEM94Q12767 1356 aa12.21□□□□□ -0.45
CUX1-206ENST00000437600 DDX17Q92841 729 aaKnown RBP12.21□□□□□ -0.45
CUX1-206ENST00000437600 THUMPD2Q9BTF0 503 aaKnown RBP12.21□□□□□ -0.45
CUX1-206ENST00000437600 ELL2O00472 640 aaPredicted RBP12.21□□□□□ -0.46
CUX1-206ENST00000437600 ORAI2Q96SN7 254 aa12.21□□□□□ -0.46
CUX1-206ENST00000437600 INSRP06213 1382 aa12.21□□□□□ -0.46
CUX1-206ENST00000437600 DIAPH1O60610 1272 aaKnown RBP12.2□□□□□ -0.46
CUX1-206ENST00000437600 ESCO1Q5FWF5 840 aa12.2□□□□□ -0.46
CUX1-206ENST00000437600 PODXL2Q9NZ53 605 aa12.2□□□□□ -0.46
CUX1-206ENST00000437600 SHPRHQ149N8 1683 aa12.2□□□□□ -0.46
CUX1-206ENST00000437600 EXOSC9Q06265 439 aaKnown RBP12.2□□□□□ -0.46
CUX1-206ENST00000437600 NGDNQ8NEJ9 315 aaKnown RBP12.2□□□□□ -0.46
CUX1-206ENST00000437600 PCDHB15Q9Y5E8 787 aa12.2□□□□□ -0.46
CUX1-206ENST00000437600 MS4A1P11836 297 aa12.19□□□□□ -0.46
CUX1-206ENST00000437600 RIPK4P57078 832 aa12.19□□□□□ -0.46
CUX1-206ENST00000437600 COG3Q96JB2 828 aa12.19□□□□□ -0.46
CUX1-206ENST00000437600 ADGRB2O60241 1585 aa12.18□□□□□ -0.46
CUX1-206ENST00000437600 SEC24BO95487 1268 aa12.18□□□□□ -0.46
CUX1-206ENST00000437600 TMPOP42166 694 aaKnown RBP12.18□□□□□ -0.46
CUX1-206ENST00000437600 C8orf34Q49A92 452 aa12.18□□□□□ -0.46
CUX1-206ENST00000437600 MAPK8IP3Q9UPT6 1336 aa12.18□□□□□ -0.46
CUX1-206ENST00000437600 FOXO3O43524 673 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 225.7 ms