RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 PMFBP1Q8TBY8 1022 aa28.03■■■□□ 2.08
PTPRF-207ENST00000436724 IRX6P78412 446 aaPredicted RBP28.01■■■□□ 2.08
PTPRF-207ENST00000436724 APAF1O14727 1248 aa28■■■□□ 2.07
PTPRF-207ENST00000436724 NALCNQ8IZF0 1738 aa27.98■■■□□ 2.07
PTPRF-207ENST00000436724 PDE3BQ13370 1112 aa27.97■■■□□ 2.07
PTPRF-207ENST00000436724 KDM4FA0A1W2PPD8 638 aa27.96■■■□□ 2.07
PTPRF-207ENST00000436724 TSHZ2Q9NRE2 1034 aa27.96■■■□□ 2.07
PTPRF-207ENST00000436724 USP6P35125 1406 aa27.96■■■□□ 2.07
PTPRF-207ENST00000436724 TTC21BQ7Z4L5 1316 aa27.96■■■□□ 2.07
PTPRF-207ENST00000436724 NRKQ7Z2Y5 1582 aa27.96■■■□□ 2.07
PTPRF-207ENST00000436724 COL3A1P02461 1466 aaPredicted RBP27.95■■■□□ 2.06
PTPRF-207ENST00000436724 PPM1GO15355 546 aaPredicted RBP27.94■■■□□ 2.06
PTPRF-207ENST00000436724 COG3Q96JB2 828 aa27.94■■■□□ 2.06
PTPRF-207ENST00000436724 POLKQ9UBT6 870 aa27.94■■■□□ 2.06
PTPRF-207ENST00000436724 HSPA2P54652 639 aa27.94■■■□□ 2.06
PTPRF-207ENST00000436724 FMN2Q9NZ56 1722 aa27.94■■■□□ 2.06
PTPRF-207ENST00000436724 U2AF1L5P0DN76 240 aaPredicted RBP27.93■■■□□ 2.06
PTPRF-207ENST00000436724 U2AF1Q01081 240 aaKnown RBP eCLIP27.93■■■□□ 2.06
PTPRF-207ENST00000436724 MAP2P11137 1827 aaKnown RBP27.93■■■□□ 2.06
PTPRF-207ENST00000436724 ZNF521Q96K83 1311 aa27.92■■■□□ 2.06
PTPRF-207ENST00000436724 NGDNQ8NEJ9 315 aaKnown RBP27.92■■■□□ 2.06
PTPRF-207ENST00000436724 EMILIN1Q9Y6C2 1016 aa27.91■■■□□ 2.06
PTPRF-207ENST00000436724 U2SURPO15042 1029 aaKnown RBP27.9■■■□□ 2.06
PTPRF-207ENST00000436724 ANKARQ7Z5J8 1434 aa27.9■■■□□ 2.06
PTPRF-207ENST00000436724 PNPLA6Q8IY17 1366 aa27.9■■■□□ 2.06
PTPRF-207ENST00000436724 SSH2Q76I76 1423 aa27.89■■■□□ 2.05
PTPRF-207ENST00000436724 RUNDC1Q96C34 613 aa27.88■■■□□ 2.05
PTPRF-207ENST00000436724 ADGRL3Q9HAR2 1447 aa27.88■■■□□ 2.05
PTPRF-207ENST00000436724 RRS1Q15050 365 aaKnown RBP27.87■■■□□ 2.05
PTPRF-207ENST00000436724 C14orf37Q86TY3 774 aa27.87■■■□□ 2.05
PTPRF-207ENST00000436724 DIAPH1O60610 1272 aaKnown RBP27.86■■■□□ 2.05
PTPRF-207ENST00000436724 RRP7AQ9Y3A4 280 aaKnown RBP27.86■■■□□ 2.05
PTPRF-207ENST00000436724 NEUROD2Q15784 382 aa27.86■■■□□ 2.05
PTPRF-207ENST00000436724 NWD1Q149M9 1564 aa27.86■■■□□ 2.05
PTPRF-207ENST00000436724 TCP11L2Q8N4U5 519 aa27.85■■■□□ 2.05
PTPRF-207ENST00000436724 AATKQ6ZMQ8 1374 aa27.84■■■□□ 2.05
PTPRF-207ENST00000436724 GOLGA2Q08379 1002 aa27.84■■■□□ 2.05
PTPRF-207ENST00000436724 OVOS2A0A0J9YW53 1432 aa27.84■■■□□ 2.05
PTPRF-207ENST00000436724 OVOS2Q6IE36 1432 aa27.84■■■□□ 2.05
PTPRF-207ENST00000436724 IQSEC2Q5JU85 1478 aa27.82■■■□□ 2.04
PTPRF-207ENST00000436724 DMRT2Q9Y5R5 561 aa27.82■■■□□ 2.04
PTPRF-207ENST00000436724 PROSER2Q86WR7 435 aaPredicted RBP27.82■■■□□ 2.04
PTPRF-207ENST00000436724 SPINK5Q9NQ38 1064 aaPredicted RBP27.82■■■□□ 2.04
PTPRF-207ENST00000436724 RNF123Q5XPI4 1314 aa27.8■■■□□ 2.04
PTPRF-207ENST00000436724 RCAN3Q9UKA8 241 aa27.8■■■□□ 2.04
PTPRF-207ENST00000436724 DUSP27Q5VZP5 1158 aa27.8■■■□□ 2.04
PTPRF-207ENST00000436724 TTC21AQ8NDW8 1320 aa27.79■■■□□ 2.04
PTPRF-207ENST00000436724 SOX12O15370 315 aa27.79■■■□□ 2.04
PTPRF-207ENST00000436724 PHF8Q9UPP1 1060 aa27.79■■■□□ 2.04
PTPRF-207ENST00000436724 WWC1Q8IX03 1113 aa27.78■■■□□ 2.04
PTPRF-207ENST00000436724 SLFN5Q08AF3 891 aa27.77■■■□□ 2.04
PTPRF-207ENST00000436724 PLEKHF1Q96S99 279 aa27.77■■■□□ 2.04
PTPRF-207ENST00000436724 CDK12Q9NYV4 1490 aaPredicted RBP27.77■■■□□ 2.04
PTPRF-207ENST00000436724 ESCO1Q5FWF5 840 aa27.77■■■□□ 2.04
PTPRF-207ENST00000436724 LMTK3Q96Q04 1460 aa27.76■■■□□ 2.03
PTPRF-207ENST00000436724 NGEFQ8N5V2 710 aa27.76■■■□□ 2.03
PTPRF-207ENST00000436724 PIK3C2AO00443 1686 aa27.75■■■□□ 2.03
PTPRF-207ENST00000436724 STRCP1A6NGW2 1772 aa27.74■■■□□ 2.03
PTPRF-207ENST00000436724 IL13P35225 146 aa27.73■■■□□ 2.03
PTPRF-207ENST00000436724 NUTM2GQ5VZR2 741 aa27.73■■■□□ 2.03
PTPRF-207ENST00000436724 USP31Q70CQ4 1352 aa27.73■■■□□ 2.03
PTPRF-207ENST00000436724 PAK3O75914 559 aaPredicted RBP27.73■■■□□ 2.03
PTPRF-207ENST00000436724 ORAI2Q96SN7 254 aa27.72■■■□□ 2.03
PTPRF-207ENST00000436724 TRMT2AQ8IZ69 625 aaKnown RBP27.72■■■□□ 2.03
PTPRF-207ENST00000436724 NLRP6P59044 892 aa27.71■■■□□ 2.03
PTPRF-207ENST00000436724 PHF23Q9BUL5 403 aaPredicted RBP27.71■■■□□ 2.03
PTPRF-207ENST00000436724 HMOX1P09601 288 aa27.7■■■□□ 2.03
PTPRF-207ENST00000436724 LRRC7Q96NW7 1537 aa27.69■■■□□ 2.02
PTPRF-207ENST00000436724 MAPK8IP3Q9UPT6 1336 aa27.69■■■□□ 2.02
PTPRF-207ENST00000436724 RRP1P56182 461 aaKnown RBP27.69■■■□□ 2.02
PTPRF-207ENST00000436724 E9PSI1 815 aa27.68■■■□□ 2.02
PTPRF-207ENST00000436724 ABTB2Q8N961 1025 aa27.68■■■□□ 2.02
PTPRF-207ENST00000436724 RSPH6AQ9H0K4 717 aa27.68■■■□□ 2.02
PTPRF-207ENST00000436724 TMEM94Q12767 1356 aa27.68■■■□□ 2.02
PTPRF-207ENST00000436724 PEAK1Q9H792 1746 aa27.68■■■□□ 2.02
PTPRF-207ENST00000436724 FCHSD2O94868 740 aa27.67■■■□□ 2.02
PTPRF-207ENST00000436724 C19orf44Q9H6X5 657 aa27.67■■■□□ 2.02
PTPRF-207ENST00000436724 PRKAR2BP31323 418 aa27.67■■■□□ 2.02
PTPRF-207ENST00000436724 TMPOP42166 694 aaKnown RBP27.67■■■□□ 2.02
PTPRF-207ENST00000436724 STRCQ7RTU9 1775 aa27.66■■■□□ 2.02
PTPRF-207ENST00000436724 CCDC27Q2M243 656 aa27.66■■■□□ 2.02
PTPRF-207ENST00000436724 HSP90AB2PQ58FF8 381 aa27.66■■■□□ 2.02
PTPRF-207ENST00000436724 MAP3K19Q56UN5 1328 aa27.66■■■□□ 2.02
PTPRF-207ENST00000436724 PSME1Q06323 249 aa27.65■■■□□ 2.02
PTPRF-207ENST00000436724 FOXO3O43524 673 aa27.65■■■□□ 2.02
PTPRF-207ENST00000436724 ERICH6BQ5W0A0 696 aa27.65■■■□□ 2.02
PTPRF-207ENST00000436724 MARF1Q9Y4F3 1742 aaKnown RBP27.64■■■□□ 2.02
PTPRF-207ENST00000436724 XPCQ01831 940 aaPredicted RBP27.63■■■□□ 2.01
PTPRF-207ENST00000436724 EIF4A2Q14240 407 aaKnown RBP27.63■■■□□ 2.01
PTPRF-207ENST00000436724 PNNQ9H307 717 aaKnown RBP27.62■■■□□ 2.01
PTPRF-207ENST00000436724 PLIN1O60240 522 aa27.62■■■□□ 2.01
PTPRF-207ENST00000436724 PHACTR3Q96KR7 559 aa27.62■■■□□ 2.01
PTPRF-207ENST00000436724 WDR63Q8IWG1 891 aa27.61■■■□□ 2.01
PTPRF-207ENST00000436724 TRIM35Q9UPQ4 493 aa27.61■■■□□ 2.01
PTPRF-207ENST00000436724 C1orf167Q5SNV9 1468 aa27.6■■■□□ 2.01
PTPRF-207ENST00000436724 RIPK4P57078 832 aa27.6■■■□□ 2.01
PTPRF-207ENST00000436724 NCBP3Q53F19 620 aaKnown RBP27.59■■■□□ 2.01
PTPRF-207ENST00000436724 PPP4R2Q9NY27 417 aa27.59■■■□□ 2.01
PTPRF-207ENST00000436724 ATF3P18847 181 aa27.58■■■□□ 2
PTPRF-207ENST00000436724 AEBP1Q8IUX7 1158 aa27.56■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms