RNA–Protein interactions for RNA: ENST00000436177.5

VPS50-203, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-203ENST00000436177 PHF8Q9UPP1 1060 aa11.36□□□□□ -0.59
VPS50-203ENST00000436177 ATRNO75882 1429 aa11.35□□□□□ -0.59
VPS50-203ENST00000436177 PLEKHG5O94827 1062 aa11.35□□□□□ -0.59
VPS50-203ENST00000436177 POTEIP0CG38 1075 aa11.35□□□□□ -0.59
VPS50-203ENST00000436177 KRT28Q7Z3Y7 464 aa11.35□□□□□ -0.59
VPS50-203ENST00000436177 ZRANB1Q9UGI0 708 aa11.35□□□□□ -0.59
VPS50-203ENST00000436177 EIF3AQ14152 1382 aaKnown RBP11.35□□□□□ -0.59
VPS50-203ENST00000436177 NRXN1Q9ULB1 1477 aa11.35□□□□□ -0.59
VPS50-203ENST00000436177 KIF1AQ12756 1690 aa11.35□□□□□ -0.59
VPS50-203ENST00000436177 SPATA31A3Q5VYP0 1347 aa11.35□□□□□ -0.59
VPS50-203ENST00000436177 TNS3Q68CZ2 1445 aa11.34□□□□□ -0.59
VPS50-203ENST00000436177 ARHGEF10O15013 1369 aa11.33□□□□□ -0.6
VPS50-203ENST00000436177 FMN2Q9NZ56 1722 aa11.33□□□□□ -0.6
VPS50-203ENST00000436177 KDM2AQ9Y2K7 1162 aa11.33□□□□□ -0.6
VPS50-203ENST00000436177 CCDC9Q9Y3X0 531 aaKnown RBP11.33□□□□□ -0.6
VPS50-203ENST00000436177 ANKARQ7Z5J8 1434 aa11.33□□□□□ -0.6
VPS50-203ENST00000436177 UNC5CLQ8IV45 518 aa11.32□□□□□ -0.6
VPS50-203ENST00000436177 DCAF11Q8TEB1 546 aa11.32□□□□□ -0.6
VPS50-203ENST00000436177 GJD4Q96KN9 370 aaPredicted RBP11.32□□□□□ -0.6
VPS50-203ENST00000436177 GPRASP1Q5JY77 1395 aa11.31□□□□□ -0.6
VPS50-203ENST00000436177 STAC3Q96MF2 364 aa11.31□□□□□ -0.6
VPS50-203ENST00000436177 TRAK1Q9UPV9 953 aa11.31□□□□□ -0.6
VPS50-203ENST00000436177 MINK1Q8N4C8 1332 aaPredicted RBP11.31□□□□□ -0.6
VPS50-203ENST00000436177 BCL9LQ86UU0 1499 aa11.31□□□□□ -0.6
VPS50-203ENST00000436177 DLC1Q96QB1 1528 aa11.3□□□□□ -0.6
VPS50-203ENST00000436177 SBNO1A3KN83 1393 aa11.3□□□□□ -0.6
VPS50-203ENST00000436177 A0A0G2JS52 829 aa11.3□□□□□ -0.6
VPS50-203ENST00000436177 MYT1Q01538 1121 aa11.3□□□□□ -0.6
VPS50-203ENST00000436177 HIRIP3Q9BW71 556 aaPredicted RBP11.3□□□□□ -0.6
VPS50-203ENST00000436177 PMFBP1Q8TBY8 1022 aa11.29□□□□□ -0.6
VPS50-203ENST00000436177 USP32Q8NFA0 1604 aa11.28□□□□□ -0.6
VPS50-203ENST00000436177 RALGAPBQ86X10 1494 aa11.28□□□□□ -0.6
VPS50-203ENST00000436177 SF3B2Q13435 895 aaKnown RBP11.28□□□□□ -0.6
VPS50-203ENST00000436177 CCDC125Q86Z20 511 aa11.28□□□□□ -0.6
VPS50-203ENST00000436177 ZNF579Q8NAF0 562 aaKnown RBP11.28□□□□□ -0.6
VPS50-203ENST00000436177 NGDNQ8NEJ9 315 aaKnown RBP11.28□□□□□ -0.6
VPS50-203ENST00000436177 CABLES1Q8TDN4 633 aa11.28□□□□□ -0.6
VPS50-203ENST00000436177 DCBLD2Q96PD2 775 aa11.28□□□□□ -0.6
VPS50-203ENST00000436177 SLIT2O94813 1529 aa11.27□□□□□ -0.61
VPS50-203ENST00000436177 ADGRB1O14514 1584 aa11.27□□□□□ -0.61
VPS50-203ENST00000436177 ADGRB2O60241 1585 aa11.27□□□□□ -0.61
VPS50-203ENST00000436177 PAK3O75914 559 aaPredicted RBP11.26□□□□□ -0.61
VPS50-203ENST00000436177 HRCP23327 699 aa11.26□□□□□ -0.61
VPS50-203ENST00000436177 VPS72Q15906 364 aa11.26□□□□□ -0.61
VPS50-203ENST00000436177 TULP4Q9NRJ4 1543 aa11.25□□□□□ -0.61
VPS50-203ENST00000436177 WASLO00401 505 aaPredicted RBP11.25□□□□□ -0.61
VPS50-203ENST00000436177 MARF1Q9Y4F3 1742 aaKnown RBP11.25□□□□□ -0.61
VPS50-203ENST00000436177 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.24□□□□□ -0.61
VPS50-203ENST00000436177 SEPT12Q8IYM1 358 aa11.24□□□□□ -0.61
VPS50-203ENST00000436177 EP400Q96L91 3159 aa11.23□□□□□ -0.61
VPS50-203ENST00000436177 CLCN6P51797 869 aa11.23□□□□□ -0.61
VPS50-203ENST00000436177 PRDM11Q9NQV5 511 aa11.23□□□□□ -0.61
VPS50-203ENST00000436177 BLMP54132 1417 aaPredicted RBP11.23□□□□□ -0.61
VPS50-203ENST00000436177 SRCAPQ6ZRS2 3230 aa11.23□□□□□ -0.61
VPS50-203ENST00000436177 GALR2O43603 387 aaPredicted RBP11.22□□□□□ -0.61
VPS50-203ENST00000436177 GLI3P10071 1580 aa11.22□□□□□ -0.61
VPS50-203ENST00000436177 PRR36Q9H6K5 1346 aa11.22□□□□□ -0.61
VPS50-203ENST00000436177 BTG4Q9NY30 223 aa11.22□□□□□ -0.61
VPS50-203ENST00000436177 FAM83GA6ND36 823 aa11.21□□□□□ -0.61
VPS50-203ENST00000436177 KRT27Q7Z3Y8 459 aa11.21□□□□□ -0.61
VPS50-203ENST00000436177 NUDT16Q96DE0 195 aaKnown RBP11.21□□□□□ -0.61
VPS50-203ENST00000436177 FAM98CQ17RN3 349 aaKnown RBP11.2□□□□□ -0.62
VPS50-203ENST00000436177 PHF12Q96QT6 1004 aa11.2□□□□□ -0.62
VPS50-203ENST00000436177 PLCH1Q4KWH8 1693 aa11.2□□□□□ -0.62
VPS50-203ENST00000436177 RGPD8O14715 1765 aaPredicted RBP11.19□□□□□ -0.62
VPS50-203ENST00000436177 NWD2Q9ULI1 1742 aa11.19□□□□□ -0.62
VPS50-203ENST00000436177 ATP7BP35670 1465 aa11.19□□□□□ -0.62
VPS50-203ENST00000436177 ABCA3Q99758 1704 aa11.18□□□□□ -0.62
VPS50-203ENST00000436177 BAG6P46379 1132 aa11.18□□□□□ -0.62
VPS50-203ENST00000436177 SRPK2P78362 688 aaKnown RBP11.18□□□□□ -0.62
VPS50-203ENST00000436177 CDK19Q9BWU1 502 aa11.18□□□□□ -0.62
VPS50-203ENST00000436177 CCDC61Q9Y6R9 512 aa11.17□□□□□ -0.62
VPS50-203ENST00000436177 KIAA0232Q92628 1395 aa11.16□□□□□ -0.62
VPS50-203ENST00000436177 COL14A1Q05707 1796 aaKnown RBP11.16□□□□□ -0.62
VPS50-203ENST00000436177 CENPJQ9HC77 1338 aaPredicted RBP11.16□□□□□ -0.62
VPS50-203ENST00000436177 ITSN1Q15811 1721 aa11.16□□□□□ -0.62
VPS50-203ENST00000436177 TRPM3Q9HCF6 1732 aaPredicted RBP11.16□□□□□ -0.62
VPS50-203ENST00000436177 ONECUT3O60422 494 aaPredicted RBP11.16□□□□□ -0.62
VPS50-203ENST00000436177 NUTM2GQ5VZR2 741 aa11.16□□□□□ -0.62
VPS50-203ENST00000436177 DEFB132Q7Z7B7 95 aa11.16□□□□□ -0.62
VPS50-203ENST00000436177 STRN4Q9NRL3 753 aa11.16□□□□□ -0.62
VPS50-203ENST00000436177 ARHGEF28Q8N1W1 1705 aaKnown RBP11.15□□□□□ -0.62
VPS50-203ENST00000436177 ACEP12821 1306 aa11.15□□□□□ -0.62
VPS50-203ENST00000436177 SPATA31A5Q5VU36 1347 aa11.15□□□□□ -0.62
VPS50-203ENST00000436177 SPATA31A7Q8IWB4 1347 aa11.15□□□□□ -0.62
VPS50-203ENST00000436177 ALS2Q96Q42 1657 aa11.15□□□□□ -0.62
VPS50-203ENST00000436177 MNX1P50219 401 aaPredicted RBP11.15□□□□□ -0.62
VPS50-203ENST00000436177 EVA1CP58658 441 aa11.15□□□□□ -0.62
VPS50-203ENST00000436177 ZC3H6P61129 1189 aaKnown RBP11.14□□□□□ -0.63
VPS50-203ENST00000436177 CHRNA2Q15822 529 aa11.14□□□□□ -0.63
VPS50-203ENST00000436177 NBPF8Q3BBV2 869 aa11.14□□□□□ -0.63
VPS50-203ENST00000436177 ABTB2Q8N961 1025 aa11.14□□□□□ -0.63
VPS50-203ENST00000436177 POLR3AO14802 1390 aaPredicted RBP11.14□□□□□ -0.63
VPS50-203ENST00000436177 KIAA1210Q9ULL0 1709 aa11.12□□□□□ -0.63
VPS50-203ENST00000436177 PPIP5K1Q6PFW1 1433 aa11.12□□□□□ -0.63
VPS50-203ENST00000436177 PLEKHG3A1L390 1219 aa11.12□□□□□ -0.63
VPS50-203ENST00000436177 NBPF1Q3BBV0 1214 aa11.12□□□□□ -0.63
VPS50-203ENST00000436177 NLRP13Q86W25 1043 aa11.12□□□□□ -0.63
VPS50-203ENST00000436177 USP35Q9P2H5 1018 aa11.12□□□□□ -0.63
VPS50-203ENST00000436177 NRAPQ86VF7 1730 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms