RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 TRPM3Q9HCF6 1732 aaPredicted RBP16.13■□□□□ 0.17
COL28A1-203ENST00000435823 ATAD2Q6PL18 1390 aa16.13■□□□□ 0.17
COL28A1-203ENST00000435823 USP47Q96K76 1375 aa16.13■□□□□ 0.17
COL28A1-203ENST00000435823 HAP1P54257 671 aaPredicted RBP16.12■□□□□ 0.17
COL28A1-203ENST00000435823 C8orf37Q96NL8 207 aa16.12■□□□□ 0.17
COL28A1-203ENST00000435823 CABP1Q9NZU7 370 aa16.12■□□□□ 0.17
COL28A1-203ENST00000435823 RGS17Q9UGC6 210 aaPredicted RBP16.12■□□□□ 0.17
COL28A1-203ENST00000435823 ZNF772Q68DY9 489 aaPredicted RBP16.11■□□□□ 0.17
COL28A1-203ENST00000435823 ILDR2Q71H61 639 aa16.1■□□□□ 0.17
COL28A1-203ENST00000435823 ALS2Q96Q42 1657 aa16.09■□□□□ 0.17
COL28A1-203ENST00000435823 PLEKHG5O94827 1062 aa16.09■□□□□ 0.17
COL28A1-203ENST00000435823 NGLY1Q96IV0 654 aa16.09■□□□□ 0.17
COL28A1-203ENST00000435823 DSG3P32926 999 aa16.08■□□□□ 0.16
COL28A1-203ENST00000435823 AFF2P51816 1311 aa16.08■□□□□ 0.16
COL28A1-203ENST00000435823 BRD4O60885 1362 aaPredicted RBP16.08■□□□□ 0.16
COL28A1-203ENST00000435823 MARF1Q9Y4F3 1742 aaKnown RBP16.08■□□□□ 0.16
COL28A1-203ENST00000435823 PUS7Q96PZ0 661 aaKnown RBP16.07■□□□□ 0.16
COL28A1-203ENST00000435823 TESK2Q96S53 571 aa16.07■□□□□ 0.16
COL28A1-203ENST00000435823 TMF1P82094 1093 aa16.06■□□□□ 0.16
COL28A1-203ENST00000435823 POTEAQ6S8J7 498 aa16.06■□□□□ 0.16
COL28A1-203ENST00000435823 CABLES1Q8TDN4 633 aa16.06■□□□□ 0.16
COL28A1-203ENST00000435823 USP6P35125 1406 aa16.05■□□□□ 0.16
COL28A1-203ENST00000435823 TMC1Q8TDI8 760 aa16.05■□□□□ 0.16
COL28A1-203ENST00000435823 ZNF692Q9BU19 519 aaPredicted RBP16.05■□□□□ 0.16
COL28A1-203ENST00000435823 ABCA3Q99758 1704 aa16.05■□□□□ 0.16
COL28A1-203ENST00000435823 ABTB2Q8N961 1025 aa16.04■□□□□ 0.16
COL28A1-203ENST00000435823 CAPN15O75808 1086 aa16.03■□□□□ 0.16
COL28A1-203ENST00000435823 CDCA8Q53HL2 280 aa16.03■□□□□ 0.16
COL28A1-203ENST00000435823 AKAP12Q02952 1782 aa16.03■□□□□ 0.16
COL28A1-203ENST00000435823 FNBP4Q8N3X1 1017 aaPredicted RBP16.02■□□□□ 0.16
COL28A1-203ENST00000435823 USP21Q9UK80 565 aa16.02■□□□□ 0.16
COL28A1-203ENST00000435823 KTN1Q86UP2 1357 aaKnown RBP16.01■□□□□ 0.15
COL28A1-203ENST00000435823 NINLQ9Y2I6 1382 aa16.01■□□□□ 0.15
COL28A1-203ENST00000435823 EIF4G2P78344 907 aaKnown RBP eCLIP16.01■□□□□ 0.15
COL28A1-203ENST00000435823 NUTM2GQ5VZR2 741 aa16.01■□□□□ 0.15
COL28A1-203ENST00000435823 HDGFL2Q7Z4V5 671 aaPredicted RBP16.01■□□□□ 0.15
COL28A1-203ENST00000435823 NLRP13Q86W25 1043 aa16.01■□□□□ 0.15
COL28A1-203ENST00000435823 TERF2IPQ9NYB0 399 aa16.01■□□□□ 0.15
COL28A1-203ENST00000435823 CPSF1Q10570 1443 aaKnown RBP16.01■□□□□ 0.15
COL28A1-203ENST00000435823 RXRBP28702 533 aa16■□□□□ 0.15
COL28A1-203ENST00000435823 SLC12A5Q9H2X9 1139 aa16■□□□□ 0.15
COL28A1-203ENST00000435823 QTRT2Q9H974 415 aaKnown RBP16■□□□□ 0.15
COL28A1-203ENST00000435823 CRYBG1Q9Y4K1 1723 aa15.99■□□□□ 0.15
COL28A1-203ENST00000435823 PHRF1Q9P1Y6 1649 aaKnown RBP15.99■□□□□ 0.15
COL28A1-203ENST00000435823 TRPC5Q9UL62 973 aaPredicted RBP15.99■□□□□ 0.15
COL28A1-203ENST00000435823 SSH2Q76I76 1423 aa15.99■□□□□ 0.15
COL28A1-203ENST00000435823 MON2Q7Z3U7 1717 aa15.99■□□□□ 0.15
COL28A1-203ENST00000435823 TTC21BQ7Z4L5 1316 aa15.98■□□□□ 0.15
COL28A1-203ENST00000435823 TTC21AQ8NDW8 1320 aa15.98■□□□□ 0.15
COL28A1-203ENST00000435823 NLRP6P59044 892 aa15.98■□□□□ 0.15
COL28A1-203ENST00000435823 SLIT2O94813 1529 aa15.98■□□□□ 0.15
COL28A1-203ENST00000435823 CD163L1Q9NR16 1453 aa15.97■□□□□ 0.15
COL28A1-203ENST00000435823 NRKQ7Z2Y5 1582 aa15.97■□□□□ 0.15
COL28A1-203ENST00000435823 HSPA5P11021 654 aaKnown RBP15.97■□□□□ 0.15
COL28A1-203ENST00000435823 BCL9LQ86UU0 1499 aa15.97■□□□□ 0.15
COL28A1-203ENST00000435823 USP19O94966 1318 aa15.96■□□□□ 0.15
COL28A1-203ENST00000435823 PLCH1Q4KWH8 1693 aa15.96■□□□□ 0.15
COL28A1-203ENST00000435823 COL14A1Q05707 1796 aaKnown RBP15.96■□□□□ 0.15
COL28A1-203ENST00000435823 FAM83GA6ND36 823 aa15.96■□□□□ 0.15
COL28A1-203ENST00000435823 RBM6P78332 1123 aaKnown RBP15.96■□□□□ 0.15
COL28A1-203ENST00000435823 UNC5CLQ8IV45 518 aa15.96■□□□□ 0.15
COL28A1-203ENST00000435823 PRDM11Q9NQV5 511 aa15.96■□□□□ 0.15
COL28A1-203ENST00000435823 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.96■□□□□ 0.15
COL28A1-203ENST00000435823 NWD2Q9ULI1 1742 aa15.96■□□□□ 0.15
COL28A1-203ENST00000435823 PIK3C2AO00443 1686 aa15.95■□□□□ 0.14
COL28A1-203ENST00000435823 ATRNO75882 1429 aa15.95■□□□□ 0.14
COL28A1-203ENST00000435823 SOCS7O14512 581 aa15.95■□□□□ 0.14
COL28A1-203ENST00000435823 A0A1W2PP64 1363 aa15.95■□□□□ 0.14
COL28A1-203ENST00000435823 EDC4Q6P2E9 1401 aaKnown RBP15.94■□□□□ 0.14
COL28A1-203ENST00000435823 ZC3H6P61129 1189 aaKnown RBP15.94■□□□□ 0.14
COL28A1-203ENST00000435823 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.94■□□□□ 0.14
COL28A1-203ENST00000435823 KIAA0232Q92628 1395 aa15.94■□□□□ 0.14
COL28A1-203ENST00000435823 CDK12Q9NYV4 1490 aaPredicted RBP15.93■□□□□ 0.14
COL28A1-203ENST00000435823 ANKRD36BQ8N2N9 1353 aa15.93■□□□□ 0.14
COL28A1-203ENST00000435823 GCP02774 474 aa15.93■□□□□ 0.14
COL28A1-203ENST00000435823 CPDO75976 1380 aa15.92■□□□□ 0.14
COL28A1-203ENST00000435823 KCNH5Q8NCM2 988 aa15.92■□□□□ 0.14
COL28A1-203ENST00000435823 BTG4Q9NY30 223 aa15.92■□□□□ 0.14
COL28A1-203ENST00000435823 SLIT3O75094 1523 aa15.92■□□□□ 0.14
COL28A1-203ENST00000435823 GJD4Q96KN9 370 aaPredicted RBP15.91■□□□□ 0.14
COL28A1-203ENST00000435823 SPINK5Q9NQ38 1064 aaPredicted RBP15.91■□□□□ 0.14
COL28A1-203ENST00000435823 USP31Q70CQ4 1352 aa15.9■□□□□ 0.14
COL28A1-203ENST00000435823 CHRNA2Q15822 529 aa15.9■□□□□ 0.14
COL28A1-203ENST00000435823 VPS72Q15906 364 aa15.9■□□□□ 0.14
COL28A1-203ENST00000435823 POLR3GLQ9BT43 218 aa15.9■□□□□ 0.14
COL28A1-203ENST00000435823 CCDC9Q9Y3X0 531 aaKnown RBP15.9■□□□□ 0.14
COL28A1-203ENST00000435823 NRAPQ86VF7 1730 aa15.89■□□□□ 0.13
COL28A1-203ENST00000435823 NCBP3Q53F19 620 aaKnown RBP15.89■□□□□ 0.13
COL28A1-203ENST00000435823 NME9Q86XW9 330 aa15.89■□□□□ 0.13
COL28A1-203ENST00000435823 RGS12O14924 1447 aa15.88■□□□□ 0.13
COL28A1-203ENST00000435823 ZBTB7CA1YPR0 619 aa15.88■□□□□ 0.13
COL28A1-203ENST00000435823 MYOM1P52179 1685 aa15.87■□□□□ 0.13
COL28A1-203ENST00000435823 USP54Q70EL1 1684 aa15.87■□□□□ 0.13
COL28A1-203ENST00000435823 SOX12O15370 315 aa15.87■□□□□ 0.13
COL28A1-203ENST00000435823 EVA1CP58658 441 aa15.86■□□□□ 0.13
COL28A1-203ENST00000435823 STRN4Q9NRL3 753 aa15.86■□□□□ 0.13
COL28A1-203ENST00000435823 ZRANB1Q9UGI0 708 aa15.86■□□□□ 0.13
COL28A1-203ENST00000435823 GLI3P10071 1580 aa15.86■□□□□ 0.13
COL28A1-203ENST00000435823 U3KPZ7 1027 aaPredicted RBP15.85■□□□□ 0.13
COL28A1-203ENST00000435823 AATKQ6ZMQ8 1374 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms