RNA–Protein interactions for RNA: ENST00000430889.2

HOXC4-202, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,666 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-202ENST00000430889 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.24■□□□□ 0.51
HOXC4-202ENST00000430889 SLIT1O75093 1534 aa18.24■□□□□ 0.51
HOXC4-202ENST00000430889 ARHGAP23Q9P227 1491 aa18.24■□□□□ 0.51
HOXC4-202ENST00000430889 PLEKHG1Q9ULL1 1385 aa18.24■□□□□ 0.51
HOXC4-202ENST00000430889 PPIP5K1Q6PFW1 1433 aa18.23■□□□□ 0.51
HOXC4-202ENST00000430889 RRP7AQ9Y3A4 280 aaKnown RBP18.22■□□□□ 0.51
HOXC4-202ENST00000430889 NRKQ7Z2Y5 1582 aa18.22■□□□□ 0.51
HOXC4-202ENST00000430889 TCERG1O14776 1098 aaKnown RBP18.21■□□□□ 0.51
HOXC4-202ENST00000430889 BCAR3O75815 825 aa18.21■□□□□ 0.51
HOXC4-202ENST00000430889 U2AF1L5P0DN76 240 aaPredicted RBP18.21■□□□□ 0.51
HOXC4-202ENST00000430889 U2AF1Q01081 240 aaKnown RBP eCLIP18.21■□□□□ 0.51
HOXC4-202ENST00000430889 ROBO2Q9HCK4 1378 aa18.2■□□□□ 0.5
HOXC4-202ENST00000430889 TXNDC2Q86VQ3 553 aa18.2■□□□□ 0.5
HOXC4-202ENST00000430889 MS4A1P11836 297 aa18.18■□□□□ 0.5
HOXC4-202ENST00000430889 LTKP29376 864 aa18.18■□□□□ 0.5
HOXC4-202ENST00000430889 LRRC7Q96NW7 1537 aa18.18■□□□□ 0.5
HOXC4-202ENST00000430889 PTPRUQ92729 1446 aa18.16■□□□□ 0.5
HOXC4-202ENST00000430889 PDE3AQ14432 1141 aa18.16■□□□□ 0.5
HOXC4-202ENST00000430889 NEUROD2Q15784 382 aa18.16■□□□□ 0.5
HOXC4-202ENST00000430889 NUDT16Q96DE0 195 aaKnown RBP18.16■□□□□ 0.5
HOXC4-202ENST00000430889 AATKQ6ZMQ8 1374 aa18.16■□□□□ 0.5
HOXC4-202ENST00000430889 CDK12Q9NYV4 1490 aaPredicted RBP18.16■□□□□ 0.5
HOXC4-202ENST00000430889 PRR36Q9H6K5 1346 aa18.16■□□□□ 0.5
HOXC4-202ENST00000430889 ANP32EQ9BTT0 268 aa18.15■□□□□ 0.5
HOXC4-202ENST00000430889 POLKQ9UBT6 870 aa18.15■□□□□ 0.5
HOXC4-202ENST00000430889 DIP2AQ14689 1571 aa18.15■□□□□ 0.5
HOXC4-202ENST00000430889 DIAPH1O60610 1272 aaKnown RBP18.15■□□□□ 0.5
HOXC4-202ENST00000430889 TMPOP42166 694 aaKnown RBP18.15■□□□□ 0.5
HOXC4-202ENST00000430889 RARSP54136 660 aaKnown RBP18.15■□□□□ 0.5
HOXC4-202ENST00000430889 TRIM35Q9UPQ4 493 aa18.15■□□□□ 0.5
HOXC4-202ENST00000430889 CENPQQ7L2Z9 268 aaPredicted RBP18.14■□□□□ 0.49
HOXC4-202ENST00000430889 CCDC61Q9Y6R9 512 aa18.14■□□□□ 0.49
HOXC4-202ENST00000430889 NALCNQ8IZF0 1738 aa18.13■□□□□ 0.49
HOXC4-202ENST00000430889 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.12■□□□□ 0.49
HOXC4-202ENST00000430889 XRN1Q8IZH2 1706 aaKnown RBP18.12■□□□□ 0.49
HOXC4-202ENST00000430889 IL16Q14005 1332 aa18.12■□□□□ 0.49
HOXC4-202ENST00000430889 U2SURPO15042 1029 aaKnown RBP18.12■□□□□ 0.49
HOXC4-202ENST00000430889 CEBPAP49715 358 aaPredicted RBP18.12■□□□□ 0.49
HOXC4-202ENST00000430889 PTCH1Q13635 1447 aa18.12■□□□□ 0.49
HOXC4-202ENST00000430889 MYH16Q9H6N6 1097 aa18.12■□□□□ 0.49
HOXC4-202ENST00000430889 RIMS1Q86UR5 1692 aaKnown RBP18.11■□□□□ 0.49
HOXC4-202ENST00000430889 NCKAP5LQ9HCH0 1330 aa18.11■□□□□ 0.49
HOXC4-202ENST00000430889 NME9Q86XW9 330 aa18.1■□□□□ 0.49
HOXC4-202ENST00000430889 FCHSD2O94868 740 aa18.09■□□□□ 0.49
HOXC4-202ENST00000430889 CT47B1P0C2W7 299 aaPredicted RBP18.09■□□□□ 0.49
HOXC4-202ENST00000430889 RSPH6AQ9H0K4 717 aa18.09■□□□□ 0.49
HOXC4-202ENST00000430889 BACH2Q9BYV9 841 aa18.09■□□□□ 0.49
HOXC4-202ENST00000430889 FBLN1P23142 703 aa18.08■□□□□ 0.48
HOXC4-202ENST00000430889 ZNF692Q9BU19 519 aaPredicted RBP18.08■□□□□ 0.48
HOXC4-202ENST00000430889 PNNQ9H307 717 aaKnown RBP18.08■□□□□ 0.48
HOXC4-202ENST00000430889 PLEKHG3A1L390 1219 aa18.07■□□□□ 0.48
HOXC4-202ENST00000430889 PDE4AP27815 886 aa18.07■□□□□ 0.48
HOXC4-202ENST00000430889 ZRANB1Q9UGI0 708 aa18.07■□□□□ 0.48
HOXC4-202ENST00000430889 TBX22Q9Y458 520 aa18.07■□□□□ 0.48
HOXC4-202ENST00000430889 MAPK8IP3Q9UPT6 1336 aa18.07■□□□□ 0.48
HOXC4-202ENST00000430889 DLG5Q8TDM6 1919 aa18.07■□□□□ 0.48
HOXC4-202ENST00000430889 OVOS2A0A0J9YW53 1432 aa18.07■□□□□ 0.48
HOXC4-202ENST00000430889 OVOS2Q6IE36 1432 aa18.07■□□□□ 0.48
HOXC4-202ENST00000430889 SSH2Q76I76 1423 aa18.07■□□□□ 0.48
HOXC4-202ENST00000430889 IL13P35225 146 aa18.06■□□□□ 0.48
HOXC4-202ENST00000430889 SKAP1Q86WV1 359 aa18.06■□□□□ 0.48
HOXC4-202ENST00000430889 EMILIN1Q9Y6C2 1016 aa18.06■□□□□ 0.48
HOXC4-202ENST00000430889 MYT1Q01538 1121 aa18.05■□□□□ 0.48
HOXC4-202ENST00000430889 PANK1Q8TE04 598 aa18.05■□□□□ 0.48
HOXC4-202ENST00000430889 EID1Q9Y6B2 187 aa18.05■□□□□ 0.48
HOXC4-202ENST00000430889 USP6P35125 1406 aa18.04■□□□□ 0.48
HOXC4-202ENST00000430889 AAMPQ13685 434 aa18.04■□□□□ 0.48
HOXC4-202ENST00000430889 RGPD8O14715 1765 aaPredicted RBP18.04■□□□□ 0.48
HOXC4-202ENST00000430889 CEP170BQ9Y4F5 1589 aaPredicted RBP18.04■□□□□ 0.48
HOXC4-202ENST00000430889 RGPD1P0DJD0 1748 aa18.03■□□□□ 0.48
HOXC4-202ENST00000430889 PEAK1Q9H792 1746 aa18.03■□□□□ 0.48
HOXC4-202ENST00000430889 RLBP1P12271 317 aa18.03■□□□□ 0.48
HOXC4-202ENST00000430889 RIPK4P57078 832 aa18.03■□□□□ 0.48
HOXC4-202ENST00000430889 TSR2Q969E8 191 aaKnown RBP18.03■□□□□ 0.48
HOXC4-202ENST00000430889 CLUAP1Q96AJ1 413 aa18.03■□□□□ 0.48
HOXC4-202ENST00000430889 COG3Q96JB2 828 aa18.03■□□□□ 0.48
HOXC4-202ENST00000430889 VIRMAQ69YN4 1812 aaKnown RBP18.02■□□□□ 0.48
HOXC4-202ENST00000430889 ZNF142P52746 1687 aaPredicted RBP18.02■□□□□ 0.48
HOXC4-202ENST00000430889 TTC21BQ7Z4L5 1316 aa18.02■□□□□ 0.48
HOXC4-202ENST00000430889 PRKAR2BP31323 418 aa18.02■□□□□ 0.47
HOXC4-202ENST00000430889 SLC26A8Q96RN1 970 aa18.02■□□□□ 0.47
HOXC4-202ENST00000430889 COG6Q9Y2V7 657 aa18.02■□□□□ 0.47
HOXC4-202ENST00000430889 USP31Q70CQ4 1352 aa18.01■□□□□ 0.47
HOXC4-202ENST00000430889 TNNQ9UQP3 1299 aa18.01■□□□□ 0.47
HOXC4-202ENST00000430889 ACEP12821 1306 aa18■□□□□ 0.47
HOXC4-202ENST00000430889 EXOSC9Q06265 439 aaKnown RBP18■□□□□ 0.47
HOXC4-202ENST00000430889 THEMISQ8N1K5 641 aaPredicted RBP18■□□□□ 0.47
HOXC4-202ENST00000430889 USP54Q70EL1 1684 aa18■□□□□ 0.47
HOXC4-202ENST00000430889 IGHDP01880 384 aa17.99■□□□□ 0.47
HOXC4-202ENST00000430889 NFE2L2Q16236 605 aa17.99■□□□□ 0.47
HOXC4-202ENST00000430889 AMOTL2Q9Y2J4 779 aa17.99■□□□□ 0.47
HOXC4-202ENST00000430889 CANXP27824 592 aaKnown RBP17.99■□□□□ 0.47
HOXC4-202ENST00000430889 FRAT1Q92837 279 aaPredicted RBP17.99■□□□□ 0.47
HOXC4-202ENST00000430889 FMN2Q9NZ56 1722 aa17.99■□□□□ 0.47
HOXC4-202ENST00000430889 PHACTR3Q96KR7 559 aa17.98■□□□□ 0.47
HOXC4-202ENST00000430889 BCL2L13Q9BXK5 485 aa17.98■□□□□ 0.47
HOXC4-202ENST00000430889 PIK3R4Q99570 1358 aa17.98■□□□□ 0.47
HOXC4-202ENST00000430889 MARF1Q9Y4F3 1742 aaKnown RBP17.98■□□□□ 0.47
HOXC4-202ENST00000430889 PPM1GO15355 546 aaPredicted RBP17.97■□□□□ 0.47
HOXC4-202ENST00000430889 ANP32AP39687 249 aaKnown RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms