RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 CPSF1Q10570 1443 aaKnown RBP17.4■□□□□ 0.38
USP40-205ENST00000430158 XPCQ01831 940 aaPredicted RBP17.4■□□□□ 0.38
USP40-205ENST00000430158 KRT28Q7Z3Y7 464 aa17.4■□□□□ 0.38
USP40-205ENST00000430158 SSH2Q76I76 1423 aa17.39■□□□□ 0.38
USP40-205ENST00000430158 SLC12A5Q9H2X9 1139 aa17.39■□□□□ 0.37
USP40-205ENST00000430158 SBNO1A3KN83 1393 aa17.39■□□□□ 0.37
USP40-205ENST00000430158 NGDNQ8NEJ9 315 aaKnown RBP17.38■□□□□ 0.37
USP40-205ENST00000430158 LRRC59Q96AG4 307 aaKnown RBP17.38■□□□□ 0.37
USP40-205ENST00000430158 MYOM1P52179 1685 aa17.38■□□□□ 0.37
USP40-205ENST00000430158 SHPRHQ149N8 1683 aa17.38■□□□□ 0.37
USP40-205ENST00000430158 ALS2Q96Q42 1657 aa17.37■□□□□ 0.37
USP40-205ENST00000430158 PSME1Q06323 249 aa17.37■□□□□ 0.37
USP40-205ENST00000430158 SPATA31A3Q5VYP0 1347 aa17.37■□□□□ 0.37
USP40-205ENST00000430158 PNPLA6Q8IY17 1366 aa17.37■□□□□ 0.37
USP40-205ENST00000430158 CDCA8Q53HL2 280 aa17.36■□□□□ 0.37
USP40-205ENST00000430158 JCADQ9P266 1359 aa17.36■□□□□ 0.37
USP40-205ENST00000430158 NINLQ9Y2I6 1382 aa17.36■□□□□ 0.37
USP40-205ENST00000430158 MON2Q7Z3U7 1717 aa17.35■□□□□ 0.37
USP40-205ENST00000430158 USP6P35125 1406 aa17.35■□□□□ 0.37
USP40-205ENST00000430158 COL22A1Q8NFW1 1626 aaPredicted RBP17.35■□□□□ 0.37
USP40-205ENST00000430158 TNS3Q68CZ2 1445 aa17.34■□□□□ 0.37
USP40-205ENST00000430158 NRKQ7Z2Y5 1582 aa17.33■□□□□ 0.37
USP40-205ENST00000430158 BRD4O60885 1362 aaPredicted RBP17.33■□□□□ 0.36
USP40-205ENST00000430158 KIF7Q2M1P5 1343 aa17.33■□□□□ 0.36
USP40-205ENST00000430158 ZNF692Q9BU19 519 aaPredicted RBP17.33■□□□□ 0.36
USP40-205ENST00000430158 A0A1W2PP64 1363 aa17.32■□□□□ 0.36
USP40-205ENST00000430158 TMC1Q8TDI8 760 aa17.32■□□□□ 0.36
USP40-205ENST00000430158 ANKRD36BQ8N2N9 1353 aa17.3■□□□□ 0.36
USP40-205ENST00000430158 SAMD1Q6SPF0 538 aaPredicted RBP17.3■□□□□ 0.36
USP40-205ENST00000430158 CRYBG1Q9Y4K1 1723 aa17.3■□□□□ 0.36
USP40-205ENST00000430158 KTN1Q86UP2 1357 aaKnown RBP17.29■□□□□ 0.36
USP40-205ENST00000430158 WASHC2AQ641Q2 1341 aa17.29■□□□□ 0.36
USP40-205ENST00000430158 TTC21BQ7Z4L5 1316 aa17.29■□□□□ 0.36
USP40-205ENST00000430158 CARD14Q9BXL6 1004 aa17.29■□□□□ 0.36
USP40-205ENST00000430158 LRP6O75581 1613 aa17.29■□□□□ 0.36
USP40-205ENST00000430158 ARHGEF10O15013 1369 aa17.28■□□□□ 0.36
USP40-205ENST00000430158 CCDC7Q96M83 1385 aa17.28■□□□□ 0.36
USP40-205ENST00000430158 SPATA31A6Q5VVP1 1343 aa17.28■□□□□ 0.36
USP40-205ENST00000430158 MARF1Q9Y4F3 1742 aaKnown RBP17.28■□□□□ 0.36
USP40-205ENST00000430158 TERF2IPQ9NYB0 399 aa17.28■□□□□ 0.36
USP40-205ENST00000430158 PIK3C2AO00443 1686 aa17.28■□□□□ 0.36
USP40-205ENST00000430158 MED1Q15648 1581 aaPredicted RBP17.28■□□□□ 0.36
USP40-205ENST00000430158 EDC4Q6P2E9 1401 aaKnown RBP17.27■□□□□ 0.35
USP40-205ENST00000430158 ABCA3Q99758 1704 aa17.27■□□□□ 0.35
USP40-205ENST00000430158 HDGFL2Q7Z4V5 671 aaPredicted RBP17.26■□□□□ 0.35
USP40-205ENST00000430158 TTC21AQ8NDW8 1320 aa17.25■□□□□ 0.35
USP40-205ENST00000430158 PAK3O75914 559 aaPredicted RBP17.25■□□□□ 0.35
USP40-205ENST00000430158 USP54Q70EL1 1684 aa17.25■□□□□ 0.35
USP40-205ENST00000430158 USP19O94966 1318 aa17.24■□□□□ 0.35
USP40-205ENST00000430158 USP31Q70CQ4 1352 aa17.24■□□□□ 0.35
USP40-205ENST00000430158 ABTB2Q8N961 1025 aa17.23■□□□□ 0.35
USP40-205ENST00000430158 CABLES1Q8TDN4 633 aa17.23■□□□□ 0.35
USP40-205ENST00000430158 NUTM2GQ5VZR2 741 aa17.22■□□□□ 0.35
USP40-205ENST00000430158 PANK3Q9H999 370 aa17.22■□□□□ 0.35
USP40-205ENST00000430158 ZRANB1Q9UGI0 708 aa17.22■□□□□ 0.35
USP40-205ENST00000430158 LMOD2Q6P5Q4 547 aa17.21■□□□□ 0.35
USP40-205ENST00000430158 NME9Q86XW9 330 aa17.21■□□□□ 0.35
USP40-205ENST00000430158 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.21■□□□□ 0.352e-6■■■□□ 18.9
USP40-205ENST00000430158 POLR3GLQ9BT43 218 aa17.21■□□□□ 0.35
USP40-205ENST00000430158 PHRF1Q9P1Y6 1649 aaKnown RBP17.21■□□□□ 0.35
USP40-205ENST00000430158 SLIT3O75094 1523 aa17.21■□□□□ 0.34
USP40-205ENST00000430158 NUTM2BA6NNL0 878 aaPredicted RBP17.19■□□□□ 0.34
USP40-205ENST00000430158 NUTM2EB1AL46 878 aaPredicted RBP17.19■□□□□ 0.34
USP40-205ENST00000430158 FYB1O15117 783 aa17.19■□□□□ 0.34
USP40-205ENST00000430158 NLRP13Q86W25 1043 aa17.19■□□□□ 0.34
USP40-205ENST00000430158 NUTM2AQ8IVF1 878 aaPredicted RBP17.19■□□□□ 0.34
USP40-205ENST00000430158 OVOS2A0A0J9YW53 1432 aa17.19■□□□□ 0.34
USP40-205ENST00000430158 OVOS2Q6IE36 1432 aa17.19■□□□□ 0.34
USP40-205ENST00000430158 NSD3Q9BZ95 1437 aa17.19■□□□□ 0.34
USP40-205ENST00000430158 PER1O15534 1290 aaPredicted RBP17.18■□□□□ 0.34
USP40-205ENST00000430158 NLRP6P59044 892 aa17.18■□□□□ 0.34
USP40-205ENST00000430158 GCP02774 474 aa17.16■□□□□ 0.34
USP40-205ENST00000430158 KIF20BQ96Q89 1820 aa17.16■□□□□ 0.34
USP40-205ENST00000430158 NFAT5O94916 1531 aa17.16■□□□□ 0.34
USP40-205ENST00000430158 RBM42Q9BTD8 480 aaKnown RBP17.15■□□□□ 0.34
USP40-205ENST00000430158 RGS17Q9UGC6 210 aaPredicted RBP17.15■□□□□ 0.34
USP40-205ENST00000430158 FAM83GA6ND36 823 aa17.14■□□□□ 0.33
USP40-205ENST00000430158 ADAMTS2O95450 1211 aa17.14■□□□□ 0.33
USP40-205ENST00000430158 CPDO75976 1380 aa17.14■□□□□ 0.33
USP40-205ENST00000430158 PLEKHG5O94827 1062 aa17.13■□□□□ 0.33
USP40-205ENST00000430158 AMER1Q5JTC6 1135 aaPredicted RBP17.13■□□□□ 0.33
USP40-205ENST00000430158 COL18A1P39060 1754 aa17.12■□□□□ 0.33
USP40-205ENST00000430158 SLIT2O94813 1529 aa17.12■□□□□ 0.33
USP40-205ENST00000430158 FNBP4Q8N3X1 1017 aaPredicted RBP17.12■□□□□ 0.33
USP40-205ENST00000430158 GGNBP2Q9H3C7 697 aa17.12■□□□□ 0.33
USP40-205ENST00000430158 ANKRD26Q9UPS8 1709 aa17.11■□□□□ 0.33
USP40-205ENST00000430158 CGNL1Q0VF96 1302 aa17.11■□□□□ 0.33
USP40-205ENST00000430158 KIAA0232Q92628 1395 aa17.11■□□□□ 0.33
USP40-205ENST00000430158 ARHGEF25Q86VW2 580 aa17.1■□□□□ 0.33
USP40-205ENST00000430158 BCL9LQ86UU0 1499 aa17.1■□□□□ 0.33
USP40-205ENST00000430158 LMO7Q8WWI1 1683 aa17.1■□□□□ 0.33
USP40-205ENST00000430158 COL14A1Q05707 1796 aaKnown RBP17.1■□□□□ 0.33
USP40-205ENST00000430158 ZC3H6P61129 1189 aaKnown RBP17.09■□□□□ 0.33
USP40-205ENST00000430158 KCNH5Q8NCM2 988 aa17.09■□□□□ 0.33
USP40-205ENST00000430158 C8orf37Q96NL8 207 aa17.09■□□□□ 0.33
USP40-205ENST00000430158 PLCH1Q4KWH8 1693 aa17.09■□□□□ 0.33
USP40-205ENST00000430158 NWD2Q9ULI1 1742 aa17.08■□□□□ 0.32
USP40-205ENST00000430158 NPC1L1Q9UHC9 1359 aa17.08■□□□□ 0.32
USP40-205ENST00000430158 AFF2P51816 1311 aa17.08■□□□□ 0.32
USP40-205ENST00000430158 FBLN1P23142 703 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms