RNA–Protein interactions for RNA: ENST00000430029.1

PTCD1-203, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 4

Gene PTCD1, Length 556 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-203ENST00000430029 TRPM3Q9HCF6 1732 aaPredicted RBP26.68■■□□□ 1.86
PTCD1-203ENST00000430029 AHDC1Q5TGY3 1603 aaPredicted RBP26.68■■□□□ 1.86
PTCD1-203ENST00000430029 SOS2Q07890 1332 aaPredicted RBP26.67■■□□□ 1.86
PTCD1-203ENST00000430029 TTC21BQ7Z4L5 1316 aa26.67■■□□□ 1.86
PTCD1-203ENST00000430029 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.65■■□□□ 1.86
PTCD1-203ENST00000430029 KNSTRNQ9Y448 316 aa26.65■■□□□ 1.86
PTCD1-203ENST00000430029 BRD4O60885 1362 aaPredicted RBP26.65■■□□□ 1.86
PTCD1-203ENST00000430029 AMER1Q5JTC6 1135 aaPredicted RBP26.63■■□□□ 1.85
PTCD1-203ENST00000430029 SBNO1A3KN83 1393 aa26.62■■□□□ 1.85
PTCD1-203ENST00000430029 PAK3O75914 559 aaPredicted RBP26.62■■□□□ 1.85
PTCD1-203ENST00000430029 NME9Q86XW9 330 aa26.62■■□□□ 1.85
PTCD1-203ENST00000430029 TTC21AQ8NDW8 1320 aa26.62■■□□□ 1.85
PTCD1-203ENST00000430029 PHLPP1O60346 1717 aa26.6■■□□□ 1.85
PTCD1-203ENST00000430029 FYB1O15117 783 aa26.6■■□□□ 1.85
PTCD1-203ENST00000430029 ZRANB1Q9UGI0 708 aa26.6■■□□□ 1.85
PTCD1-203ENST00000430029 CGNL1Q0VF96 1302 aa26.6■■□□□ 1.85
PTCD1-203ENST00000430029 PIK3C2AO00443 1686 aa26.59■■□□□ 1.85
PTCD1-203ENST00000430029 ALS2Q96Q42 1657 aa26.59■■□□□ 1.85
PTCD1-203ENST00000430029 SPATA31A3Q5VYP0 1347 aa26.59■■□□□ 1.85
PTCD1-203ENST00000430029 KIF20BQ96Q89 1820 aa26.58■■□□□ 1.85
PTCD1-203ENST00000430029 COL16A1Q07092 1604 aaPredicted RBP26.58■■□□□ 1.85
PTCD1-203ENST00000430029 TNS3Q68CZ2 1445 aa26.57■■□□□ 1.84
PTCD1-203ENST00000430029 GGNBP2Q9H3C7 697 aa26.57■■□□□ 1.84
PTCD1-203ENST00000430029 NPC1L1Q9UHC9 1359 aa26.56■■□□□ 1.84
PTCD1-203ENST00000430029 CC2D1BQ5T0F9 858 aaKnown RBP26.55■■□□□ 1.84
PTCD1-203ENST00000430029 ABTB2Q8N961 1025 aa26.55■■□□□ 1.84
PTCD1-203ENST00000430029 CNGB1Q14028 1251 aaPredicted RBP26.54■■□□□ 1.84
PTCD1-203ENST00000430029 NUTM2GQ5VZR2 741 aa26.54■■□□□ 1.84
PTCD1-203ENST00000430029 USP31Q70CQ4 1352 aa26.54■■□□□ 1.84
PTCD1-203ENST00000430029 LMOD2Q6P5Q4 547 aa26.53■■□□□ 1.84
PTCD1-203ENST00000430029 NSD2O96028 1365 aa26.53■■□□□ 1.84
PTCD1-203ENST00000430029 OVOS2A0A0J9YW53 1432 aa26.53■■□□□ 1.84
PTCD1-203ENST00000430029 OVOS2Q6IE36 1432 aa26.53■■□□□ 1.84
PTCD1-203ENST00000430029 MARF1Q9Y4F3 1742 aaKnown RBP26.53■■□□□ 1.84
PTCD1-203ENST00000430029 DIEXFQ68CQ4 756 aaKnown RBP26.52■■□□□ 1.84
PTCD1-203ENST00000430029 NLRP6P59044 892 aa26.51■■□□□ 1.83
PTCD1-203ENST00000430029 LRRC59Q96AG4 307 aaKnown RBP26.51■■□□□ 1.83
PTCD1-203ENST00000430029 ANKRD26Q9UPS8 1709 aa26.51■■□□□ 1.83
PTCD1-203ENST00000430029 USP54Q70EL1 1684 aa26.5■■□□□ 1.83
PTCD1-203ENST00000430029 HSPA1LP34931 641 aa26.5■■□□□ 1.83
PTCD1-203ENST00000430029 ARHGEF10O15013 1369 aa26.49■■□□□ 1.83
PTCD1-203ENST00000430029 NLRP13Q86W25 1043 aa26.47■■□□□ 1.83
PTCD1-203ENST00000430029 COG3Q96JB2 828 aa26.47■■□□□ 1.83
PTCD1-203ENST00000430029 PNPLA6Q8IY17 1366 aa26.46■■□□□ 1.83
PTCD1-203ENST00000430029 MED1Q15648 1581 aaPredicted RBP26.46■■□□□ 1.83
PTCD1-203ENST00000430029 USP19O94966 1318 aa26.45■■□□□ 1.83
PTCD1-203ENST00000430029 MORC1Q86VD1 984 aa26.45■■□□□ 1.82
PTCD1-203ENST00000430029 PARD3Q8TEW0 1356 aa26.45■■□□□ 1.82
PTCD1-203ENST00000430029 PLEKHG5O94827 1062 aa26.44■■□□□ 1.82
PTCD1-203ENST00000430029 CRYBG1Q9Y4K1 1723 aa26.44■■□□□ 1.82
PTCD1-203ENST00000430029 SLIT3O75094 1523 aa26.44■■□□□ 1.82
PTCD1-203ENST00000430029 CABLES1Q8TDN4 633 aa26.43■■□□□ 1.82
PTCD1-203ENST00000430029 PRKRIP1Q9H875 184 aaPredicted RBP26.43■■□□□ 1.82
PTCD1-203ENST00000430029 FBLN1P23142 703 aa26.42■■□□□ 1.82
PTCD1-203ENST00000430029 COL22A1Q8NFW1 1626 aaPredicted RBP26.42■■□□□ 1.82
PTCD1-203ENST00000430029 ILDR2Q71H61 639 aa26.41■■□□□ 1.82
PTCD1-203ENST00000430029 PHRF1Q9P1Y6 1649 aaKnown RBP26.4■■□□□ 1.82
PTCD1-203ENST00000430029 TNNT2P45379 298 aaPredicted RBP26.4■■□□□ 1.82
PTCD1-203ENST00000430029 JCADQ9P266 1359 aa26.39■■□□□ 1.82
PTCD1-203ENST00000430029 SOX12O15370 315 aa26.39■■□□□ 1.82
PTCD1-203ENST00000430029 ANP32CO43423 234 aa26.39■■□□□ 1.82
PTCD1-203ENST00000430029 RALBP1Q15311 655 aa26.39■■□□□ 1.82
PTCD1-203ENST00000430029 ABCA3Q99758 1704 aa26.39■■□□□ 1.81
PTCD1-203ENST00000430029 SHPRHQ149N8 1683 aa26.38■■□□□ 1.81
PTCD1-203ENST00000430029 GCP02774 474 aa26.38■■□□□ 1.81
PTCD1-203ENST00000430029 NFAT5O94916 1531 aa26.38■■□□□ 1.81
PTCD1-203ENST00000430029 AATKQ6ZMQ8 1374 aa26.35■■□□□ 1.81
PTCD1-203ENST00000430029 KCNH5Q8NCM2 988 aa26.34■■□□□ 1.81
PTCD1-203ENST00000430029 SOCS7O14512 581 aa26.33■■□□□ 1.81
PTCD1-203ENST00000430029 PPP2R1AP30153 589 aa26.33■■□□□ 1.81
PTCD1-203ENST00000430029 RRS1Q15050 365 aaKnown RBP26.32■■□□□ 1.8
PTCD1-203ENST00000430029 MAP2P11137 1827 aaKnown RBP26.31■■□□□ 1.8
PTCD1-203ENST00000430029 POLKQ9UBT6 870 aa26.31■■□□□ 1.8
PTCD1-203ENST00000430029 ZC3H6P61129 1189 aaKnown RBP26.3■■□□□ 1.8
PTCD1-203ENST00000430029 MAP3K19Q56UN5 1328 aa26.3■■□□□ 1.8
PTCD1-203ENST00000430029 MYBBP1AQ9BQG0 1328 aaKnown RBP26.3■■□□□ 1.8
PTCD1-203ENST00000430029 EMILIN1Q9Y6C2 1016 aa26.29■■□□□ 1.8
PTCD1-203ENST00000430029 HAP1P54257 671 aaPredicted RBP26.28■■□□□ 1.8
PTCD1-203ENST00000430029 ARHGEF25Q86VW2 580 aa26.28■■□□□ 1.8
PTCD1-203ENST00000430029 MIER1Q8N108 512 aa26.28■■□□□ 1.8
PTCD1-203ENST00000430029 SMG6Q86US8 1419 aaKnown RBP26.27■■□□□ 1.8
PTCD1-203ENST00000430029 PEAK1Q9H792 1746 aa26.27■■□□□ 1.8
PTCD1-203ENST00000430029 LTN1O94822 1766 aa26.26■■□□□ 1.79
PTCD1-203ENST00000430029 CPDO75976 1380 aa26.26■■□□□ 1.79
PTCD1-203ENST00000430029 KIAA0232Q92628 1395 aa26.26■■□□□ 1.79
PTCD1-203ENST00000430029 NUTM2BA6NNL0 878 aaPredicted RBP26.26■■□□□ 1.79
PTCD1-203ENST00000430029 NUTM2EB1AL46 878 aaPredicted RBP26.26■■□□□ 1.79
PTCD1-203ENST00000430029 MTHFSP49914 203 aa26.26■■□□□ 1.79
PTCD1-203ENST00000430029 NUTM2AQ8IVF1 878 aaPredicted RBP26.26■■□□□ 1.79
PTCD1-203ENST00000430029 SPATA31A6Q5VVP1 1343 aa26.25■■□□□ 1.79
PTCD1-203ENST00000430029 LRP6O75581 1613 aa26.24■■□□□ 1.79
PTCD1-203ENST00000430029 ZBTB7CA1YPR0 619 aa26.23■■□□□ 1.79
PTCD1-203ENST00000430029 COL18A1P39060 1754 aa26.22■■□□□ 1.79
PTCD1-203ENST00000430029 PPM1GO15355 546 aaPredicted RBP26.21■■□□□ 1.79
PTCD1-203ENST00000430029 ADAMTS2O95450 1211 aa26.21■■□□□ 1.79
PTCD1-203ENST00000430029 CHRNA2Q15822 529 aa26.21■■□□□ 1.79
PTCD1-203ENST00000430029 CCDC184Q52MB2 194 aa26.21■■□□□ 1.79
PTCD1-203ENST00000430029 FAM83GA6ND36 823 aa26.2■■□□□ 1.78
PTCD1-203ENST00000430029 AMPHP49418 695 aa26.2■■□□□ 1.78
PTCD1-203ENST00000430029 PRDM11Q9NQV5 511 aa26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms