RNA–Protein interactions for RNA: ENST00000429662.6

GABPB1-205, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,392 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-205ENST00000429662 E9PCH4 1651 aa11.6□□□□□ -0.55
GABPB1-205ENST00000429662 B4GALNT3Q6L9W6 998 aa11.6□□□□□ -0.55
GABPB1-205ENST00000429662 PARD3Q8TEW0 1356 aa11.6□□□□□ -0.55
GABPB1-205ENST00000429662 MST1RQ04912 1400 aa11.6□□□□□ -0.55
GABPB1-205ENST00000429662 ERBINQ96RT1 1412 aa11.6□□□□□ -0.55
GABPB1-205ENST00000429662 BCL9LQ86UU0 1499 aa11.6□□□□□ -0.55
GABPB1-205ENST00000429662 CCDC136Q96JN2 1154 aa11.59□□□□□ -0.55
GABPB1-205ENST00000429662 PTPRUQ92729 1446 aa11.59□□□□□ -0.55
GABPB1-205ENST00000429662 TRPM1Q7Z4N2 1603 aa11.59□□□□□ -0.55
GABPB1-205ENST00000429662 NRXN3Q9Y4C0 1643 aa11.59□□□□□ -0.55
GABPB1-205ENST00000429662 IQGAP3Q86VI3 1631 aa11.58□□□□□ -0.56
GABPB1-205ENST00000429662 ATRNO75882 1429 aa11.58□□□□□ -0.56
GABPB1-205ENST00000429662 DCCP43146 1447 aa11.58□□□□□ -0.56
GABPB1-205ENST00000429662 QTRT2Q9H974 415 aaKnown RBP11.58□□□□□ -0.56
GABPB1-205ENST00000429662 BRWD3Q6RI45 1802 aa11.58□□□□□ -0.56
GABPB1-205ENST00000429662 MARF1Q9Y4F3 1742 aaKnown RBP11.58□□□□□ -0.56
GABPB1-205ENST00000429662 COL22A1Q8NFW1 1626 aaPredicted RBP11.58□□□□□ -0.56
GABPB1-205ENST00000429662 TRPM2O94759 1503 aa11.57□□□□□ -0.56
GABPB1-205ENST00000429662 NUTM2BA6NNL0 878 aaPredicted RBP11.57□□□□□ -0.56
GABPB1-205ENST00000429662 NUTM2EB1AL46 878 aaPredicted RBP11.57□□□□□ -0.56
GABPB1-205ENST00000429662 NUTM2AQ8IVF1 878 aaPredicted RBP11.57□□□□□ -0.56
GABPB1-205ENST00000429662 PHF12Q96QT6 1004 aa11.57□□□□□ -0.56
GABPB1-205ENST00000429662 NALCNQ8IZF0 1738 aa11.57□□□□□ -0.56
GABPB1-205ENST00000429662 TMF1P82094 1093 aa11.56□□□□□ -0.56
GABPB1-205ENST00000429662 SLC24A1O60721 1099 aa11.55□□□□□ -0.56
GABPB1-205ENST00000429662 NUTM2DQ5VT03 806 aaPredicted RBP11.55□□□□□ -0.56
GABPB1-205ENST00000429662 PROM2Q8N271 834 aa11.55□□□□□ -0.56
GABPB1-205ENST00000429662 SPHKAPQ2M3C7 1700 aa11.55□□□□□ -0.56
GABPB1-205ENST00000429662 PER1O15534 1290 aaPredicted RBP11.54□□□□□ -0.56
GABPB1-205ENST00000429662 CDCA8Q53HL2 280 aa11.54□□□□□ -0.56
GABPB1-205ENST00000429662 C8orf37Q96NL8 207 aa11.54□□□□□ -0.56
GABPB1-205ENST00000429662 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.54□□□□□ -0.56
GABPB1-205ENST00000429662 GLI3P10071 1580 aa11.54□□□□□ -0.56
GABPB1-205ENST00000429662 PAK3O75914 559 aaPredicted RBP11.54□□□□□ -0.56
GABPB1-205ENST00000429662 RRP1P56182 461 aaKnown RBP11.54□□□□□ -0.56
GABPB1-205ENST00000429662 CADPS2Q86UW7 1296 aa11.54□□□□□ -0.56
GABPB1-205ENST00000429662 C19orf44Q9H6X5 657 aa11.54□□□□□ -0.56
GABPB1-205ENST00000429662 RIMS2Q9UQ26 1411 aa11.53□□□□□ -0.56
GABPB1-205ENST00000429662 ANP32AP39687 249 aaKnown RBP11.52□□□□□ -0.57
GABPB1-205ENST00000429662 DDX17Q92841 729 aaKnown RBP11.52□□□□□ -0.57
GABPB1-205ENST00000429662 TESK2Q96S53 571 aa11.52□□□□□ -0.57
GABPB1-205ENST00000429662 RCAN3Q9UKA8 241 aa11.52□□□□□ -0.57
GABPB1-205ENST00000429662 TBX22Q9Y458 520 aa11.52□□□□□ -0.57
GABPB1-205ENST00000429662 PIK3R4Q99570 1358 aa11.51□□□□□ -0.57
GABPB1-205ENST00000429662 UTRNP46939 3433 aa11.51□□□□□ -0.57
GABPB1-205ENST00000429662 TCERG1O14776 1098 aaKnown RBP11.51□□□□□ -0.57
GABPB1-205ENST00000429662 MYOM2P54296 1465 aa11.5□□□□□ -0.57
GABPB1-205ENST00000429662 BLMP54132 1417 aaPredicted RBP11.5□□□□□ -0.57
GABPB1-205ENST00000429662 FNBP4Q8N3X1 1017 aaPredicted RBP11.5□□□□□ -0.57
GABPB1-205ENST00000429662 NOP58Q9Y2X3 529 aaKnown RBP11.5□□□□□ -0.57
GABPB1-205ENST00000429662 MS4A1P11836 297 aa11.49□□□□□ -0.57
GABPB1-205ENST00000429662 NBPF1Q3BBV0 1214 aa11.49□□□□□ -0.57
GABPB1-205ENST00000429662 RGL3Q3MIN7 710 aa11.49□□□□□ -0.57
GABPB1-205ENST00000429662 PTCH1Q13635 1447 aa11.48□□□□□ -0.57
GABPB1-205ENST00000429662 CNGB1Q14028 1251 aaPredicted RBP11.48□□□□□ -0.57
GABPB1-205ENST00000429662 ATF3P18847 181 aa11.47□□□□□ -0.57
GABPB1-205ENST00000429662 CCDC125Q86Z20 511 aa11.47□□□□□ -0.57
GABPB1-205ENST00000429662 NGLY1Q96IV0 654 aa11.47□□□□□ -0.57
GABPB1-205ENST00000429662 IPO9Q96P70 1041 aaKnown RBP11.47□□□□□ -0.57
GABPB1-205ENST00000429662 PANK3Q9H999 370 aa11.47□□□□□ -0.57
GABPB1-205ENST00000429662 NPC1L1Q9UHC9 1359 aa11.46□□□□□ -0.57
GABPB1-205ENST00000429662 DEFB132Q7Z7B7 95 aa11.46□□□□□ -0.57
GABPB1-205ENST00000429662 LRRC59Q96AG4 307 aaKnown RBP11.46□□□□□ -0.57
GABPB1-205ENST00000429662 ADGRL3Q9HAR2 1447 aa11.46□□□□□ -0.58
GABPB1-205ENST00000429662 EIF3AQ14152 1382 aaKnown RBP11.45□□□□□ -0.58
GABPB1-205ENST00000429662 KANK1Q14678 1352 aa11.45□□□□□ -0.58
GABPB1-205ENST00000429662 SLC52A1Q9NWF4 448 aa11.45□□□□□ -0.58
GABPB1-205ENST00000429662 CEP350Q5VT06 3117 aa11.44□□□□□ -0.58
GABPB1-205ENST00000429662 ADAMTS2O95450 1211 aa11.44□□□□□ -0.58
GABPB1-205ENST00000429662 NGEFQ8N5V2 710 aa11.44□□□□□ -0.58
GABPB1-205ENST00000429662 USP21Q9UK80 565 aa11.44□□□□□ -0.58
GABPB1-205ENST00000429662 TRPC5Q9UL62 973 aaPredicted RBP11.44□□□□□ -0.58
GABPB1-205ENST00000429662 KNSTRNQ9Y448 316 aa11.44□□□□□ -0.58
GABPB1-205ENST00000429662 SOS2Q07890 1332 aaPredicted RBP11.44□□□□□ -0.58
GABPB1-205ENST00000429662 C1orf167Q5SNV9 1468 aa11.44□□□□□ -0.58
GABPB1-205ENST00000429662 ZBTB47Q9UFB7 747 aaPredicted RBP11.43□□□□□ -0.58
GABPB1-205ENST00000429662 POTEB2H3BUK9 544 aa11.42□□□□□ -0.58
GABPB1-205ENST00000429662 TNS1Q9HBL0 1735 aaKnown RBP11.42□□□□□ -0.58
GABPB1-205ENST00000429662 CC2D1BQ5T0F9 858 aaKnown RBP11.41□□□□□ -0.58
GABPB1-205ENST00000429662 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.41□□□□□ -0.58
GABPB1-205ENST00000429662 EXOC6Q8TAG9 804 aa11.41□□□□□ -0.58
GABPB1-205ENST00000429662 MS4A3Q96HJ5 214 aa11.41□□□□□ -0.58
GABPB1-205ENST00000429662 AMOTL2Q9Y2J4 779 aa11.41□□□□□ -0.58
GABPB1-205ENST00000429662 PXDNQ92626 1479 aa11.41□□□□□ -0.58
GABPB1-205ENST00000429662 SLIT2O94813 1529 aa11.41□□□□□ -0.58
GABPB1-205ENST00000429662 PIK3C2GO75747 1445 aa11.41□□□□□ -0.58
GABPB1-205ENST00000429662 WDR43Q15061 677 aaKnown RBP eCLIP11.41□□□□□ -0.58
GABPB1-205ENST00000429662 C14orf37Q86TY3 774 aa11.41□□□□□ -0.58
GABPB1-205ENST00000429662 KIAA1210Q9ULL0 1709 aa11.4□□□□□ -0.58
GABPB1-205ENST00000429662 METP08581 1390 aa11.39□□□□□ -0.59
GABPB1-205ENST00000429662 PPP2R1AP30153 589 aa11.39□□□□□ -0.59
GABPB1-205ENST00000429662 PSDA5PKW4 1024 aaPredicted RBP11.38□□□□□ -0.59
GABPB1-205ENST00000429662 AMER1Q5JTC6 1135 aaPredicted RBP11.38□□□□□ -0.59
GABPB1-205ENST00000429662 OTUD5Q96G74 571 aa11.38□□□□□ -0.59
GABPB1-205ENST00000429662 GJD4Q96KN9 370 aaPredicted RBP11.38□□□□□ -0.59
GABPB1-205ENST00000429662 PLCH1Q4KWH8 1693 aa11.37□□□□□ -0.59
GABPB1-205ENST00000429662 ABCA3Q99758 1704 aa11.37□□□□□ -0.59
GABPB1-205ENST00000429662 PDE4AP27815 886 aa11.37□□□□□ -0.59
GABPB1-205ENST00000429662 DDRGK1Q96HY6 314 aa11.37□□□□□ -0.59
GABPB1-205ENST00000429662 BACH2Q9BYV9 841 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms