RNA–Protein interactions for RNA: ENST00000428776.1

HMGB3P4-201, Transcript of high mobility group box 3 pseudogene 4, humanhuman

BASIC

Gene HMGB3P4, Length 514 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P4-201ENST00000428776 YTHDC1Q96MU7 727 aaKnown RBP17.15■□□□□ 0.34
HMGB3P4-201ENST00000428776 GGNBP2Q9H3C7 697 aa17.15■□□□□ 0.34
HMGB3P4-201ENST00000428776 C1orf167Q5SNV9 1468 aa17.14■□□□□ 0.33
HMGB3P4-201ENST00000428776 CADPS2Q86UW7 1296 aa17.14■□□□□ 0.33
HMGB3P4-201ENST00000428776 TTC21BQ7Z4L5 1316 aa17.14■□□□□ 0.33
HMGB3P4-201ENST00000428776 USP54Q70EL1 1684 aa17.13■□□□□ 0.33
HMGB3P4-201ENST00000428776 MST1RQ04912 1400 aa17.13■□□□□ 0.33
HMGB3P4-201ENST00000428776 ESCO1Q5FWF5 840 aa17.13■□□□□ 0.33
HMGB3P4-201ENST00000428776 PNISRQ8TF01 805 aaKnown RBP17.13■□□□□ 0.33
HMGB3P4-201ENST00000428776 TTC21AQ8NDW8 1320 aa17.13■□□□□ 0.33
HMGB3P4-201ENST00000428776 PIK3C2AO00443 1686 aa17.11■□□□□ 0.33
HMGB3P4-201ENST00000428776 SCAF1Q9H7N4 1312 aaKnown RBP17.11■□□□□ 0.33
HMGB3P4-201ENST00000428776 NME9Q86XW9 330 aa17.1■□□□□ 0.33
HMGB3P4-201ENST00000428776 FAM9BQ8IZU0 186 aa17.1■□□□□ 0.33
HMGB3P4-201ENST00000428776 TNNT2P45379 298 aaPredicted RBP17.09■□□□□ 0.33
HMGB3P4-201ENST00000428776 COG3Q96JB2 828 aa17.09■□□□□ 0.33
HMGB3P4-201ENST00000428776 ORAI2Q96SN7 254 aa17.09■□□□□ 0.33
HMGB3P4-201ENST00000428776 MARF1Q9Y4F3 1742 aaKnown RBP17.09■□□□□ 0.33
HMGB3P4-201ENST00000428776 TRPM3Q9HCF6 1732 aaPredicted RBP17.08■□□□□ 0.32
HMGB3P4-201ENST00000428776 LTBP4Q8N2S1 1624 aa17.08■□□□□ 0.32
HMGB3P4-201ENST00000428776 PSME1Q06323 249 aa17.07■□□□□ 0.32
HMGB3P4-201ENST00000428776 AEBP2Q6ZN18 517 aaPredicted RBP17.07■□□□□ 0.32
HMGB3P4-201ENST00000428776 SHPRHQ149N8 1683 aa17.07■□□□□ 0.32
HMGB3P4-201ENST00000428776 OVOS2A0A0J9YW53 1432 aa17.06■□□□□ 0.32
HMGB3P4-201ENST00000428776 OVOS2Q6IE36 1432 aa17.06■□□□□ 0.32
HMGB3P4-201ENST00000428776 USP31Q70CQ4 1352 aa17.06■□□□□ 0.32
HMGB3P4-201ENST00000428776 AATKQ6ZMQ8 1374 aa17.05■□□□□ 0.32
HMGB3P4-201ENST00000428776 MTHFSP49914 203 aa17.05■□□□□ 0.32
HMGB3P4-201ENST00000428776 CFAP53Q96M91 514 aa17.05■□□□□ 0.32
HMGB3P4-201ENST00000428776 ZRANB1Q9UGI0 708 aa17.05■□□□□ 0.32
HMGB3P4-201ENST00000428776 INSRP06213 1382 aa17.04■□□□□ 0.32
HMGB3P4-201ENST00000428776 FOXO3O43524 673 aa17.03■□□□□ 0.32
HMGB3P4-201ENST00000428776 CENPBP07199 599 aaPredicted RBP17.03■□□□□ 0.32
HMGB3P4-201ENST00000428776 ALS2Q96Q42 1657 aa17.03■□□□□ 0.32
HMGB3P4-201ENST00000428776 PAK3O75914 559 aaPredicted RBP17.02■□□□□ 0.32
HMGB3P4-201ENST00000428776 WDR43Q15061 677 aaKnown RBP eCLIP17.02■□□□□ 0.32
HMGB3P4-201ENST00000428776 SLAIN2Q9P270 581 aa17.02■□□□□ 0.32
HMGB3P4-201ENST00000428776 KRT28Q7Z3Y7 464 aa17.01■□□□□ 0.31
HMGB3P4-201ENST00000428776 ABTB2Q8N961 1025 aa17.01■□□□□ 0.31
HMGB3P4-201ENST00000428776 SMG6Q86US8 1419 aaKnown RBP17.01■□□□□ 0.31
HMGB3P4-201ENST00000428776 POLKQ9UBT6 870 aa17■□□□□ 0.31
HMGB3P4-201ENST00000428776 LTN1O94822 1766 aa17■□□□□ 0.31
HMGB3P4-201ENST00000428776 COL3A1P02461 1466 aaPredicted RBP16.99■□□□□ 0.31
HMGB3P4-201ENST00000428776 NPHP3Q7Z494 1330 aa16.99■□□□□ 0.31
HMGB3P4-201ENST00000428776 NLRP6P59044 892 aa16.99■□□□□ 0.31
HMGB3P4-201ENST00000428776 HNRNPUQ00839 825 aaKnown RBP eCLIP16.99■□□□□ 0.31
HMGB3P4-201ENST00000428776 PNPLA6Q8IY17 1366 aa16.99■□□□□ 0.31
HMGB3P4-201ENST00000428776 NHSL1Q5SYE7 1610 aa16.99■□□□□ 0.31
HMGB3P4-201ENST00000428776 CDK12Q9NYV4 1490 aaPredicted RBP16.99■□□□□ 0.31
HMGB3P4-201ENST00000428776 BLMP54132 1417 aaPredicted RBP16.97■□□□□ 0.31
HMGB3P4-201ENST00000428776 BRINP3Q76B58 766 aa16.97■□□□□ 0.31
HMGB3P4-201ENST00000428776 ADAMTS8Q9UP79 889 aa16.97■□□□□ 0.31
HMGB3P4-201ENST00000428776 SBNO1A3KN83 1393 aa16.97■□□□□ 0.31
HMGB3P4-201ENST00000428776 PXDNQ92626 1479 aa16.97■□□□□ 0.31
HMGB3P4-201ENST00000428776 PEAK1Q9H792 1746 aa16.96■□□□□ 0.3
HMGB3P4-201ENST00000428776 FBLN1P23142 703 aa16.95■□□□□ 0.3
HMGB3P4-201ENST00000428776 XPCQ01831 940 aaPredicted RBP16.95■□□□□ 0.3
HMGB3P4-201ENST00000428776 PPM1GO15355 546 aaPredicted RBP16.94■□□□□ 0.3
HMGB3P4-201ENST00000428776 NUTM2GQ5VZR2 741 aa16.94■□□□□ 0.3
HMGB3P4-201ENST00000428776 NUDCQ9Y266 331 aa16.94■□□□□ 0.3
HMGB3P4-201ENST00000428776 EMILIN1Q9Y6C2 1016 aa16.94■□□□□ 0.3
HMGB3P4-201ENST00000428776 PHRF1Q9P1Y6 1649 aaKnown RBP16.94■□□□□ 0.3
HMGB3P4-201ENST00000428776 SLIT3O75094 1523 aa16.94■□□□□ 0.3
HMGB3P4-201ENST00000428776 DIAPH1O60610 1272 aaKnown RBP16.93■□□□□ 0.3
HMGB3P4-201ENST00000428776 RRS1Q15050 365 aaKnown RBP16.93■□□□□ 0.3
HMGB3P4-201ENST00000428776 ROBO1Q9Y6N7 1651 aa16.93■□□□□ 0.3
HMGB3P4-201ENST00000428776 KIF24Q5T7B8 1368 aa16.92■□□□□ 0.3
HMGB3P4-201ENST00000428776 NFAT5O94916 1531 aa16.92■□□□□ 0.3
HMGB3P4-201ENST00000428776 KCNH5Q8NCM2 988 aa16.92■□□□□ 0.3
HMGB3P4-201ENST00000428776 TNS3Q68CZ2 1445 aa16.92■□□□□ 0.3
HMGB3P4-201ENST00000428776 CRYBG1Q9Y4K1 1723 aa16.92■□□□□ 0.3
HMGB3P4-201ENST00000428776 ZBED9Q6R2W3 1325 aa16.92■□□□□ 0.3
HMGB3P4-201ENST00000428776 DDX17Q92841 729 aaKnown RBP16.91■□□□□ 0.3
HMGB3P4-201ENST00000428776 LMOD2Q6P5Q4 547 aa16.9■□□□□ 0.3
HMGB3P4-201ENST00000428776 USP19O94966 1318 aa16.9■□□□□ 0.3
HMGB3P4-201ENST00000428776 SOS2Q07890 1332 aaPredicted RBP16.9■□□□□ 0.3
HMGB3P4-201ENST00000428776 MAP3K19Q56UN5 1328 aa16.9■□□□□ 0.3
HMGB3P4-201ENST00000428776 SPATA31A3Q5VYP0 1347 aa16.9■□□□□ 0.3
HMGB3P4-201ENST00000428776 ARHGEF10O15013 1369 aa16.89■□□□□ 0.3
HMGB3P4-201ENST00000428776 SOX12O15370 315 aa16.89■□□□□ 0.29
HMGB3P4-201ENST00000428776 MED1Q15648 1581 aaPredicted RBP16.89■□□□□ 0.29
HMGB3P4-201ENST00000428776 FLT4P35916 1363 aa16.89■□□□□ 0.29
HMGB3P4-201ENST00000428776 IQSEC2Q5JU85 1478 aa16.88■□□□□ 0.29
HMGB3P4-201ENST00000428776 RGPD1P0DJD0 1748 aa16.88■□□□□ 0.29
HMGB3P4-201ENST00000428776 U2AF1L5P0DN76 240 aaPredicted RBP16.88■□□□□ 0.29
HMGB3P4-201ENST00000428776 U2AF1Q01081 240 aaKnown RBP eCLIP16.88■□□□□ 0.29
HMGB3P4-201ENST00000428776 U2SURPO15042 1029 aaKnown RBP16.87■□□□□ 0.29
HMGB3P4-201ENST00000428776 IL13P35225 146 aa16.87■□□□□ 0.29
HMGB3P4-201ENST00000428776 AMPHP49418 695 aa16.87■□□□□ 0.29
HMGB3P4-201ENST00000428776 AHDC1Q5TGY3 1603 aaPredicted RBP16.87■□□□□ 0.29
HMGB3P4-201ENST00000428776 RTL1A6NKG5 1358 aa16.87■□□□□ 0.29
HMGB3P4-201ENST00000428776 GCP02774 474 aa16.86■□□□□ 0.29
HMGB3P4-201ENST00000428776 RUNDC1Q96C34 613 aa16.86■□□□□ 0.29
HMGB3P4-201ENST00000428776 PNNQ9H307 717 aaKnown RBP16.86■□□□□ 0.29
HMGB3P4-201ENST00000428776 RGPD5Q99666 1765 aa16.86■□□□□ 0.29
HMGB3P4-201ENST00000428776 ABCA3Q99758 1704 aa16.85■□□□□ 0.29
HMGB3P4-201ENST00000428776 NGEFQ8N5V2 710 aa16.85■□□□□ 0.29
HMGB3P4-201ENST00000428776 TOM1O60784 492 aa16.84■□□□□ 0.29
HMGB3P4-201ENST00000428776 HOXC9P31274 260 aa16.84■□□□□ 0.29
HMGB3P4-201ENST00000428776 HSP90AB2PQ58FF8 381 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms