RNA–Protein interactions for RNA: ENST00000428404.5

TRIM39-207, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 427 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-207ENST00000428404 PSME1Q06323 249 aa17.02■□□□□ 0.32
TRIM39-207ENST00000428404 NRKQ7Z2Y5 1582 aa17.02■□□□□ 0.31
TRIM39-207ENST00000428404 IQSEC2Q5JU85 1478 aa17.01■□□□□ 0.31
TRIM39-207ENST00000428404 CCER2I3L3R5 266 aa17■□□□□ 0.31
TRIM39-207ENST00000428404 CNGB1Q14028 1251 aaPredicted RBP17■□□□□ 0.31
TRIM39-207ENST00000428404 NME9Q86XW9 330 aa17■□□□□ 0.31
TRIM39-207ENST00000428404 GGNBP2Q9H3C7 697 aa17■□□□□ 0.31
TRIM39-207ENST00000428404 KRT28Q7Z3Y7 464 aa16.99■□□□□ 0.31
TRIM39-207ENST00000428404 CERKQ8TCT0 537 aa16.99■□□□□ 0.31
TRIM39-207ENST00000428404 USP31Q70CQ4 1352 aa16.99■□□□□ 0.31
TRIM39-207ENST00000428404 NPHP3Q7Z494 1330 aa16.98■□□□□ 0.31
TRIM39-207ENST00000428404 MORC1Q86VD1 984 aa16.98■□□□□ 0.31
TRIM39-207ENST00000428404 MYBBP1AQ9BQG0 1328 aaKnown RBP16.97■□□□□ 0.31
TRIM39-207ENST00000428404 ZRANB1Q9UGI0 708 aa16.97■□□□□ 0.31
TRIM39-207ENST00000428404 PPP2R1AP30153 589 aa16.96■□□□□ 0.31
TRIM39-207ENST00000428404 DDX17Q92841 729 aaKnown RBP16.96■□□□□ 0.31
TRIM39-207ENST00000428404 PXDNQ92626 1479 aa16.96■□□□□ 0.31
TRIM39-207ENST00000428404 SOS2Q07890 1332 aaPredicted RBP16.96■□□□□ 0.3
TRIM39-207ENST00000428404 SCAF1Q9H7N4 1312 aaKnown RBP16.96■□□□□ 0.3
TRIM39-207ENST00000428404 SBNO1A3KN83 1393 aa16.95■□□□□ 0.3
TRIM39-207ENST00000428404 TOM1O60784 492 aa16.95■□□□□ 0.3
TRIM39-207ENST00000428404 XPCQ01831 940 aaPredicted RBP16.95■□□□□ 0.3
TRIM39-207ENST00000428404 COG3Q96JB2 828 aa16.95■□□□□ 0.3
TRIM39-207ENST00000428404 OVOS2A0A0J9YW53 1432 aa16.95■□□□□ 0.3
TRIM39-207ENST00000428404 OVOS2Q6IE36 1432 aa16.95■□□□□ 0.3
TRIM39-207ENST00000428404 NLRP13Q86W25 1043 aa16.94■□□□□ 0.3
TRIM39-207ENST00000428404 ABTB2Q8N961 1025 aa16.94■□□□□ 0.3
TRIM39-207ENST00000428404 KIF20BQ96Q89 1820 aa16.93■□□□□ 0.3
TRIM39-207ENST00000428404 TRPM3Q9HCF6 1732 aaPredicted RBP16.93■□□□□ 0.3
TRIM39-207ENST00000428404 PAK3O75914 559 aaPredicted RBP16.93■□□□□ 0.3
TRIM39-207ENST00000428404 CCDC184Q52MB2 194 aa16.93■□□□□ 0.3
TRIM39-207ENST00000428404 ANKRD26Q9UPS8 1709 aa16.93■□□□□ 0.3
TRIM39-207ENST00000428404 PIK3C2AO00443 1686 aa16.92■□□□□ 0.3
TRIM39-207ENST00000428404 UBAP1LF5GYI3 381 aa16.91■□□□□ 0.3
TRIM39-207ENST00000428404 NLRP6P59044 892 aa16.91■□□□□ 0.3
TRIM39-207ENST00000428404 SPATA31A3Q5VYP0 1347 aa16.91■□□□□ 0.3
TRIM39-207ENST00000428404 AATKQ6ZMQ8 1374 aa16.9■□□□□ 0.3
TRIM39-207ENST00000428404 TNNT2P45379 298 aaPredicted RBP16.9■□□□□ 0.3
TRIM39-207ENST00000428404 USP54Q70EL1 1684 aa16.9■□□□□ 0.3
TRIM39-207ENST00000428404 NHSL1Q5SYE7 1610 aa16.89■□□□□ 0.29
TRIM39-207ENST00000428404 TNS3Q68CZ2 1445 aa16.88■□□□□ 0.29
TRIM39-207ENST00000428404 ROBO1Q9Y6N7 1651 aa16.88■□□□□ 0.29
TRIM39-207ENST00000428404 NUTM2GQ5VZR2 741 aa16.88■□□□□ 0.29
TRIM39-207ENST00000428404 USP19O94966 1318 aa16.88■□□□□ 0.29
TRIM39-207ENST00000428404 ALS2Q96Q42 1657 aa16.88■□□□□ 0.29
TRIM39-207ENST00000428404 FBLN1P23142 703 aa16.87■□□□□ 0.29
TRIM39-207ENST00000428404 MTHFSP49914 203 aa16.87■□□□□ 0.29
TRIM39-207ENST00000428404 MRS2Q9HD23 443 aa16.87■□□□□ 0.29
TRIM39-207ENST00000428404 POLKQ9UBT6 870 aa16.87■□□□□ 0.29
TRIM39-207ENST00000428404 AHDC1Q5TGY3 1603 aaPredicted RBP16.87■□□□□ 0.29
TRIM39-207ENST00000428404 MARF1Q9Y4F3 1742 aaKnown RBP16.86■□□□□ 0.29
TRIM39-207ENST00000428404 ARHGEF10O15013 1369 aa16.86■□□□□ 0.29
TRIM39-207ENST00000428404 PIP4K2BP78356 416 aa16.85■□□□□ 0.29
TRIM39-207ENST00000428404 INSRP06213 1382 aa16.85■□□□□ 0.29
TRIM39-207ENST00000428404 PNPLA6Q8IY17 1366 aa16.85■□□□□ 0.29
TRIM39-207ENST00000428404 SMG6Q86US8 1419 aaKnown RBP16.85■□□□□ 0.29
TRIM39-207ENST00000428404 LMOD2Q6P5Q4 547 aa16.84■□□□□ 0.29
TRIM39-207ENST00000428404 PNISRQ8TF01 805 aaKnown RBP16.84■□□□□ 0.29
TRIM39-207ENST00000428404 SLIT3O75094 1523 aa16.83■□□□□ 0.28
TRIM39-207ENST00000428404 KCNH5Q8NCM2 988 aa16.83■□□□□ 0.28
TRIM39-207ENST00000428404 LRRC59Q96AG4 307 aaKnown RBP16.83■□□□□ 0.28
TRIM39-207ENST00000428404 GCP02774 474 aa16.82■□□□□ 0.28
TRIM39-207ENST00000428404 RRS1Q15050 365 aaKnown RBP16.82■□□□□ 0.28
TRIM39-207ENST00000428404 EMILIN1Q9Y6C2 1016 aa16.82■□□□□ 0.28
TRIM39-207ENST00000428404 MED1Q15648 1581 aaPredicted RBP16.81■□□□□ 0.28
TRIM39-207ENST00000428404 NFAT5O94916 1531 aa16.81■□□□□ 0.28
TRIM39-207ENST00000428404 MAP3K19Q56UN5 1328 aa16.8■□□□□ 0.28
TRIM39-207ENST00000428404 KIF24Q5T7B8 1368 aa16.79■□□□□ 0.28
TRIM39-207ENST00000428404 ARHGEF25Q86VW2 580 aa16.79■□□□□ 0.28
TRIM39-207ENST00000428404 CFAP53Q96M91 514 aa16.79■□□□□ 0.28
TRIM39-207ENST00000428404 COL3A1P02461 1466 aaPredicted RBP16.79■□□□□ 0.28
TRIM39-207ENST00000428404 MAP2P11137 1827 aaKnown RBP16.78■□□□□ 0.28
TRIM39-207ENST00000428404 SOX12O15370 315 aa16.78■□□□□ 0.28
TRIM39-207ENST00000428404 CDK12Q9NYV4 1490 aaPredicted RBP16.78■□□□□ 0.28
TRIM39-207ENST00000428404 COL16A1Q07092 1604 aaPredicted RBP16.78■□□□□ 0.28
TRIM39-207ENST00000428404 CABLES1Q8TDN4 633 aa16.77■□□□□ 0.28
TRIM39-207ENST00000428404 PPM1GO15355 546 aaPredicted RBP16.76■□□□□ 0.27
TRIM39-207ENST00000428404 CRYBG1Q9Y4K1 1723 aa16.76■□□□□ 0.27
TRIM39-207ENST00000428404 IP6K1Q92551 441 aa16.75■□□□□ 0.27
TRIM39-207ENST00000428404 PHLPP1O60346 1717 aa16.75■□□□□ 0.27
TRIM39-207ENST00000428404 CPDO75976 1380 aa16.75■□□□□ 0.27
TRIM39-207ENST00000428404 FLT4P35916 1363 aa16.75■□□□□ 0.27
TRIM39-207ENST00000428404 PEAK1Q9H792 1746 aa16.74■□□□□ 0.27
TRIM39-207ENST00000428404 DIAPH1O60610 1272 aaKnown RBP16.74■□□□□ 0.27
TRIM39-207ENST00000428404 HOXC9P31274 260 aa16.74■□□□□ 0.27
TRIM39-207ENST00000428404 IL13P35225 146 aa16.74■□□□□ 0.27
TRIM39-207ENST00000428404 AMPHP49418 695 aa16.74■□□□□ 0.27
TRIM39-207ENST00000428404 HSP90AB2PQ58FF8 381 aa16.74■□□□□ 0.27
TRIM39-207ENST00000428404 FAM9BQ8IZU0 186 aa16.74■□□□□ 0.27
TRIM39-207ENST00000428404 RTL1A6NKG5 1358 aa16.74■□□□□ 0.27
TRIM39-207ENST00000428404 ADAMTS8Q9UP79 889 aa16.73■□□□□ 0.27
TRIM39-207ENST00000428404 COL22A1Q8NFW1 1626 aaPredicted RBP16.73■□□□□ 0.27
TRIM39-207ENST00000428404 PHRF1Q9P1Y6 1649 aaKnown RBP16.73■□□□□ 0.27
TRIM39-207ENST00000428404 PLEKHG5O94827 1062 aa16.72■□□□□ 0.27
TRIM39-207ENST00000428404 ZC3H6P61129 1189 aaKnown RBP16.71■□□□□ 0.27
TRIM39-207ENST00000428404 EIF4A2Q14240 407 aaKnown RBP16.71■□□□□ 0.27
TRIM39-207ENST00000428404 NUDCQ9Y266 331 aa16.71■□□□□ 0.27
TRIM39-207ENST00000428404 SHPRHQ149N8 1683 aa16.7■□□□□ 0.26
TRIM39-207ENST00000428404 WDR43Q15061 677 aaKnown RBP eCLIP16.7■□□□□ 0.26
TRIM39-207ENST00000428404 KIAA0232Q92628 1395 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms