RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 GJD4Q96KN9 370 aaPredicted RBP26.29■■□□□ 1.8
GPC1-205ENST00000427506 POLR3AO14802 1390 aaPredicted RBP26.28■■□□□ 1.8
GPC1-205ENST00000427506 TOPAZ1Q8N9V7 1692 aa26.28■■□□□ 1.8
GPC1-205ENST00000427506 ABCA3Q99758 1704 aa26.28■■□□□ 1.8
GPC1-205ENST00000427506 PPIP5K1Q6PFW1 1433 aa26.27■■□□□ 1.8
GPC1-205ENST00000427506 EVC2Q86UK5 1308 aa26.26■■□□□ 1.79
GPC1-205ENST00000427506 FAM83GA6ND36 823 aa26.25■■□□□ 1.79
GPC1-205ENST00000427506 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.25■■□□□ 1.79
GPC1-205ENST00000427506 CARD11Q9BXL7 1154 aa26.24■■□□□ 1.79
GPC1-205ENST00000427506 CCDC9Q9Y3X0 531 aaKnown RBP26.24■■□□□ 1.79
GPC1-205ENST00000427506 NUTM2GQ5VZR2 741 aa26.23■■□□□ 1.79
GPC1-205ENST00000427506 CABP1Q9NZU7 370 aa26.22■■□□□ 1.79
GPC1-205ENST00000427506 PLCH1Q4KWH8 1693 aa26.21■■□□□ 1.79
GPC1-205ENST00000427506 RALGAPBQ86X10 1494 aa26.2■■□□□ 1.78
GPC1-205ENST00000427506 VPS72Q15906 364 aa26.2■■□□□ 1.78
GPC1-205ENST00000427506 ABTB2Q8N961 1025 aa26.2■■□□□ 1.78
GPC1-205ENST00000427506 PRDM11Q9NQV5 511 aa26.19■■□□□ 1.78
GPC1-205ENST00000427506 BTG4Q9NY30 223 aa26.19■■□□□ 1.78
GPC1-205ENST00000427506 ATAD2Q6PL18 1390 aa26.19■■□□□ 1.78
GPC1-205ENST00000427506 NWD2Q9ULI1 1742 aa26.18■■□□□ 1.78
GPC1-205ENST00000427506 GLI3P10071 1580 aa26.16■■□□□ 1.78
GPC1-205ENST00000427506 COL14A1Q05707 1796 aaKnown RBP26.15■■□□□ 1.78
GPC1-205ENST00000427506 CRYBG1Q9Y4K1 1723 aa26.14■■□□□ 1.78
GPC1-205ENST00000427506 ZC3H6P61129 1189 aaKnown RBP26.14■■□□□ 1.78
GPC1-205ENST00000427506 KIAA0232Q92628 1395 aa26.13■■□□□ 1.77
GPC1-205ENST00000427506 NLRP13Q86W25 1043 aa26.13■■□□□ 1.77
GPC1-205ENST00000427506 BRD4O60885 1362 aaPredicted RBP26.12■■□□□ 1.77
GPC1-205ENST00000427506 PHRF1Q9P1Y6 1649 aaKnown RBP26.11■■□□□ 1.77
GPC1-205ENST00000427506 CHRNA2Q15822 529 aa26.11■■□□□ 1.77
GPC1-205ENST00000427506 USP6P35125 1406 aa26.11■■□□□ 1.77
GPC1-205ENST00000427506 A0A0G2JS52 829 aa26.1■■□□□ 1.77
GPC1-205ENST00000427506 MYT1Q01538 1121 aa26.1■■□□□ 1.77
GPC1-205ENST00000427506 SEPT12Q8IYM1 358 aa26.1■■□□□ 1.77
GPC1-205ENST00000427506 PCGF6Q9BYE7 350 aa26.1■■□□□ 1.77
GPC1-205ENST00000427506 SBNO2Q9Y2G9 1366 aa26.08■■□□□ 1.77
GPC1-205ENST00000427506 ZNF692Q9BU19 519 aaPredicted RBP26.08■■□□□ 1.77
GPC1-205ENST00000427506 NRAPQ86VF7 1730 aa26.08■■□□□ 1.76
GPC1-205ENST00000427506 NLRP6P59044 892 aa26.07■■□□□ 1.76
GPC1-205ENST00000427506 STRN4Q9NRL3 753 aa26.06■■□□□ 1.76
GPC1-205ENST00000427506 USP19O94966 1318 aa26.06■■□□□ 1.76
GPC1-205ENST00000427506 ONECUT3O60422 494 aaPredicted RBP26.05■■□□□ 1.76
GPC1-205ENST00000427506 GCP02774 474 aa26.05■■□□□ 1.76
GPC1-205ENST00000427506 FAM98CQ17RN3 349 aaKnown RBP26.05■■□□□ 1.76
GPC1-205ENST00000427506 NRKQ7Z2Y5 1582 aa26.03■■□□□ 1.76
GPC1-205ENST00000427506 EVA1CP58658 441 aa26.03■■□□□ 1.76
GPC1-205ENST00000427506 TMC1Q8TDI8 760 aa26.02■■□□□ 1.76
GPC1-205ENST00000427506 SPATA31A5Q5VU36 1347 aa26.02■■□□□ 1.76
GPC1-205ENST00000427506 SPATA31A7Q8IWB4 1347 aa26.02■■□□□ 1.76
GPC1-205ENST00000427506 ZBTB7CA1YPR0 619 aa26.01■■□□□ 1.75
GPC1-205ENST00000427506 SSH2Q76I76 1423 aa26■■□□□ 1.75
GPC1-205ENST00000427506 CPDO75976 1380 aa26■■□□□ 1.75
GPC1-205ENST00000427506 KTN1Q86UP2 1357 aaKnown RBP26■■□□□ 1.75
GPC1-205ENST00000427506 TTC21BQ7Z4L5 1316 aa26■■□□□ 1.75
GPC1-205ENST00000427506 KRT27Q7Z3Y8 459 aa26■■□□□ 1.75
GPC1-205ENST00000427506 CCDC125Q86Z20 511 aa25.99■■□□□ 1.75
GPC1-205ENST00000427506 ST20-MTHFSA0A0A6YYL1 179 aa25.98■■□□□ 1.75
GPC1-205ENST00000427506 BRWD3Q6RI45 1802 aa25.98■■□□□ 1.75
GPC1-205ENST00000427506 CPSF1Q10570 1443 aaKnown RBP25.97■■□□□ 1.75
GPC1-205ENST00000427506 TTC21AQ8NDW8 1320 aa25.97■■□□□ 1.75
GPC1-205ENST00000427506 SPATA31A1Q5TZJ5 1347 aa25.96■■□□□ 1.75
GPC1-205ENST00000427506 CLSPNQ9HAW4 1339 aa25.96■■□□□ 1.75
GPC1-205ENST00000427506 USP35Q9P2H5 1018 aa25.96■■□□□ 1.75
GPC1-205ENST00000427506 AKAP12Q02952 1782 aa25.96■■□□□ 1.75
GPC1-205ENST00000427506 HDGFL2Q7Z4V5 671 aaPredicted RBP25.95■■□□□ 1.74
GPC1-205ENST00000427506 PIK3C2AO00443 1686 aa25.95■■□□□ 1.74
GPC1-205ENST00000427506 SLC24A1O60721 1099 aa25.94■■□□□ 1.74
GPC1-205ENST00000427506 SLC12A5Q9H2X9 1139 aa25.94■■□□□ 1.74
GPC1-205ENST00000427506 TIMELESSQ9UNS1 1208 aa25.94■■□□□ 1.74
GPC1-205ENST00000427506 SLIT3O75094 1523 aa25.93■■□□□ 1.74
GPC1-205ENST00000427506 CAMTA1Q9Y6Y1 1673 aa25.93■■□□□ 1.74
GPC1-205ENST00000427506 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.93■■□□□ 1.74
GPC1-205ENST00000427506 PUS7Q96PZ0 661 aaKnown RBP25.93■■□□□ 1.74
GPC1-205ENST00000427506 SOX12O15370 315 aa25.92■■□□□ 1.74
GPC1-205ENST00000427506 SF3B2Q13435 895 aaKnown RBP25.92■■□□□ 1.74
GPC1-205ENST00000427506 LARP1Q6PKG0 1096 aaKnown RBP25.92■■□□□ 1.74
GPC1-205ENST00000427506 KCNH5Q8NCM2 988 aa25.92■■□□□ 1.74
GPC1-205ENST00000427506 TESK2Q96S53 571 aa25.92■■□□□ 1.74
GPC1-205ENST00000427506 BLMP54132 1417 aaPredicted RBP25.91■■□□□ 1.74
GPC1-205ENST00000427506 TERF2IPQ9NYB0 399 aa25.91■■□□□ 1.74
GPC1-205ENST00000427506 LMO7Q8WWI1 1683 aa25.9■■□□□ 1.74
GPC1-205ENST00000427506 USP47Q96K76 1375 aa25.89■■□□□ 1.74
GPC1-205ENST00000427506 CD163L1Q9NR16 1453 aa25.88■■□□□ 1.73
GPC1-205ENST00000427506 AATKQ6ZMQ8 1374 aa25.88■■□□□ 1.73
GPC1-205ENST00000427506 MON2Q7Z3U7 1717 aa25.88■■□□□ 1.73
GPC1-205ENST00000427506 CCER1Q8TC90 406 aaPredicted RBP25.87■■□□□ 1.73
GPC1-205ENST00000427506 COL5A2P05997 1499 aaPredicted RBP25.86■■□□□ 1.73
GPC1-205ENST00000427506 FAM182BQ5T319 152 aa25.86■■□□□ 1.73
GPC1-205ENST00000427506 TCP11L2Q8N4U5 519 aa25.86■■□□□ 1.73
GPC1-205ENST00000427506 THSD7AQ9UPZ6 1657 aa25.86■■□□□ 1.73
GPC1-205ENST00000427506 TMF1P82094 1093 aa25.85■■□□□ 1.73
GPC1-205ENST00000427506 BARGINQ6ZT62 677 aa25.85■■□□□ 1.73
GPC1-205ENST00000427506 NME9Q86XW9 330 aa25.85■■□□□ 1.73
GPC1-205ENST00000427506 ZRANB1Q9UGI0 708 aa25.85■■□□□ 1.73
GPC1-205ENST00000427506 A0A1W2PP64 1363 aa25.84■■□□□ 1.73
GPC1-205ENST00000427506 ARHGEF25Q86VW2 580 aa25.84■■□□□ 1.73
GPC1-205ENST00000427506 NINLQ9Y2I6 1382 aa25.83■■□□□ 1.73
GPC1-205ENST00000427506 EDC4Q6P2E9 1401 aaKnown RBP25.83■■□□□ 1.73
GPC1-205ENST00000427506 THRAP3Q9Y2W1 955 aaKnown RBP25.83■■□□□ 1.73
GPC1-205ENST00000427506 CRB1P82279 1406 aa25.82■■□□□ 1.72
GPC1-205ENST00000427506 EP400Q96L91 3159 aa25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms