RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 CPSF1Q10570 1443 aaKnown RBP21.45■■□□□ 1.03
SHOX2-202ENST00000425436 MYOM1P52179 1685 aa21.45■■□□□ 1.02
SHOX2-202ENST00000425436 TRPM3Q9HCF6 1732 aaPredicted RBP21.45■■□□□ 1.02
SHOX2-202ENST00000425436 A0A1W2PP64 1363 aa21.44■■□□□ 1.02
SHOX2-202ENST00000425436 NINLQ9Y2I6 1382 aa21.44■■□□□ 1.02
SHOX2-202ENST00000425436 USP6P35125 1406 aa21.44■■□□□ 1.02
SHOX2-202ENST00000425436 SBNO1A3KN83 1393 aa21.44■■□□□ 1.02
SHOX2-202ENST00000425436 NUTM2GQ5VZR2 741 aa21.43■■□□□ 1.02
SHOX2-202ENST00000425436 CCDC7Q96M83 1385 aa21.43■■□□□ 1.02
SHOX2-202ENST00000425436 JCADQ9P266 1359 aa21.43■■□□□ 1.02
SHOX2-202ENST00000425436 CCER2I3L3R5 266 aa21.42■■□□□ 1.02
SHOX2-202ENST00000425436 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.42■■□□□ 1.02
SHOX2-202ENST00000425436 TNS3Q68CZ2 1445 aa21.42■■□□□ 1.02
SHOX2-202ENST00000425436 PNPLA6Q8IY17 1366 aa21.41■■□□□ 1.02
SHOX2-202ENST00000425436 MON2Q7Z3U7 1717 aa21.41■■□□□ 1.02
SHOX2-202ENST00000425436 ANKRD36BQ8N2N9 1353 aa21.41■■□□□ 1.02
SHOX2-202ENST00000425436 ABTB2Q8N961 1025 aa21.4■■□□□ 1.02
SHOX2-202ENST00000425436 TTC21BQ7Z4L5 1316 aa21.4■■□□□ 1.02
SHOX2-202ENST00000425436 CABLES1Q8TDN4 633 aa21.39■■□□□ 1.02
SHOX2-202ENST00000425436 CARD14Q9BXL6 1004 aa21.39■■□□□ 1.02
SHOX2-202ENST00000425436 PANK3Q9H999 370 aa21.39■■□□□ 1.02
SHOX2-202ENST00000425436 SSH2Q76I76 1423 aa21.39■■□□□ 1.02
SHOX2-202ENST00000425436 NUTM2BA6NNL0 878 aaPredicted RBP21.39■■□□□ 1.01
SHOX2-202ENST00000425436 NUTM2EB1AL46 878 aaPredicted RBP21.39■■□□□ 1.01
SHOX2-202ENST00000425436 NUTM2AQ8IVF1 878 aaPredicted RBP21.39■■□□□ 1.01
SHOX2-202ENST00000425436 ALS2Q96Q42 1657 aa21.38■■□□□ 1.01
SHOX2-202ENST00000425436 SHPRHQ149N8 1683 aa21.38■■□□□ 1.01
SHOX2-202ENST00000425436 ZRANB1Q9UGI0 708 aa21.36■■□□□ 1.01
SHOX2-202ENST00000425436 ARHGEF10O15013 1369 aa21.36■■□□□ 1.01
SHOX2-202ENST00000425436 NRKQ7Z2Y5 1582 aa21.35■■□□□ 1.01
SHOX2-202ENST00000425436 NME9Q86XW9 330 aa21.35■■□□□ 1.01
SHOX2-202ENST00000425436 BRD4O60885 1362 aaPredicted RBP21.35■■□□□ 1.01
SHOX2-202ENST00000425436 EDC4Q6P2E9 1401 aaKnown RBP21.35■■□□□ 1.01
SHOX2-202ENST00000425436 NLRP6P59044 892 aa21.34■■□□□ 1.01
SHOX2-202ENST00000425436 YTHDC1Q96MU7 727 aaKnown RBP21.34■■□□□ 1.01
SHOX2-202ENST00000425436 TTC21AQ8NDW8 1320 aa21.34■■□□□ 1.01
SHOX2-202ENST00000425436 COL22A1Q8NFW1 1626 aaPredicted RBP21.33■■□□□ 1
SHOX2-202ENST00000425436 PIK3C2AO00443 1686 aa21.32■■□□□ 1
SHOX2-202ENST00000425436 SPATA31A6Q5VVP1 1343 aa21.32■■□□□ 1
SHOX2-202ENST00000425436 NSD3Q9BZ95 1437 aa21.32■■□□□ 1
SHOX2-202ENST00000425436 ADAMTS2O95450 1211 aa21.31■■□□□ 1
SHOX2-202ENST00000425436 HAP1P54257 671 aaPredicted RBP21.31■■□□□ 1
SHOX2-202ENST00000425436 NLRP13Q86W25 1043 aa21.31■■□□□ 1
SHOX2-202ENST00000425436 LRP6O75581 1613 aa21.29■■□□□ 1
SHOX2-202ENST00000425436 FYB1O15117 783 aa21.29■■□□□ 1
SHOX2-202ENST00000425436 GGNBP2Q9H3C7 697 aa21.29■■□□□ 1
SHOX2-202ENST00000425436 MED1Q15648 1581 aaPredicted RBP21.29■■□□□ 1
SHOX2-202ENST00000425436 SOX12O15370 315 aa21.28■■□□□ 1
SHOX2-202ENST00000425436 MEX3CQ5U5Q3 659 aaKnown RBP21.26■□□□□ 0.99
SHOX2-202ENST00000425436 KNSTRNQ9Y448 316 aa21.25■□□□□ 0.99
SHOX2-202ENST00000425436 ABCA3Q99758 1704 aa21.25■□□□□ 0.99
SHOX2-202ENST00000425436 MARF1Q9Y4F3 1742 aaKnown RBP21.25■□□□□ 0.99
SHOX2-202ENST00000425436 CRYBG1Q9Y4K1 1723 aa21.25■□□□□ 0.99
SHOX2-202ENST00000425436 GCP02774 474 aa21.24■□□□□ 0.99
SHOX2-202ENST00000425436 ZC3H6P61129 1189 aaKnown RBP21.24■□□□□ 0.99
SHOX2-202ENST00000425436 USP31Q70CQ4 1352 aa21.24■□□□□ 0.99
SHOX2-202ENST00000425436 USP19O94966 1318 aa21.24■□□□□ 0.99
SHOX2-202ENST00000425436 CGNL1Q0VF96 1302 aa21.24■□□□□ 0.99
SHOX2-202ENST00000425436 PER1O15534 1290 aaPredicted RBP21.24■□□□□ 0.99
SHOX2-202ENST00000425436 COG3Q96JB2 828 aa21.24■□□□□ 0.99
SHOX2-202ENST00000425436 KIF20BQ96Q89 1820 aa21.23■□□□□ 0.99
SHOX2-202ENST00000425436 PHRF1Q9P1Y6 1649 aaKnown RBP21.23■□□□□ 0.99
SHOX2-202ENST00000425436 CNGB1Q14028 1251 aaPredicted RBP21.23■□□□□ 0.99
SHOX2-202ENST00000425436 C8orf37Q96NL8 207 aa21.23■□□□□ 0.99
SHOX2-202ENST00000425436 FBLN1P23142 703 aa21.22■□□□□ 0.99
SHOX2-202ENST00000425436 ZBTB7CA1YPR0 619 aa21.2■□□□□ 0.98
SHOX2-202ENST00000425436 FAM83GA6ND36 823 aa21.2■□□□□ 0.98
SHOX2-202ENST00000425436 NGLY1Q96IV0 654 aa21.2■□□□□ 0.98
SHOX2-202ENST00000425436 OVOS2A0A0J9YW53 1432 aa21.2■□□□□ 0.98
SHOX2-202ENST00000425436 OVOS2Q6IE36 1432 aa21.2■□□□□ 0.98
SHOX2-202ENST00000425436 SLIT3O75094 1523 aa21.19■□□□□ 0.98
SHOX2-202ENST00000425436 CHRNA2Q15822 529 aa21.19■□□□□ 0.98
SHOX2-202ENST00000425436 AMER1Q5JTC6 1135 aaPredicted RBP21.19■□□□□ 0.98
SHOX2-202ENST00000425436 KCNH5Q8NCM2 988 aa21.19■□□□□ 0.98
SHOX2-202ENST00000425436 KIAA0232Q92628 1395 aa21.18■□□□□ 0.98
SHOX2-202ENST00000425436 USP54Q70EL1 1684 aa21.18■□□□□ 0.98
SHOX2-202ENST00000425436 CC2D1BQ5T0F9 858 aaKnown RBP21.17■□□□□ 0.98
SHOX2-202ENST00000425436 PRDM11Q9NQV5 511 aa21.17■□□□□ 0.98
SHOX2-202ENST00000425436 TNNT2P45379 298 aaPredicted RBP21.16■□□□□ 0.98
SHOX2-202ENST00000425436 NFAT5O94916 1531 aa21.14■□□□□ 0.97
SHOX2-202ENST00000425436 PRKRIP1Q9H875 184 aaPredicted RBP21.14■□□□□ 0.97
SHOX2-202ENST00000425436 AFF2P51816 1311 aa21.13■□□□□ 0.97
SHOX2-202ENST00000425436 MORC1Q86VD1 984 aa21.13■□□□□ 0.97
SHOX2-202ENST00000425436 ARHGEF25Q86VW2 580 aa21.13■□□□□ 0.97
SHOX2-202ENST00000425436 ANKRD26Q9UPS8 1709 aa21.12■□□□□ 0.97
SHOX2-202ENST00000425436 RRS1Q15050 365 aaKnown RBP21.12■□□□□ 0.97
SHOX2-202ENST00000425436 CPDO75976 1380 aa21.12■□□□□ 0.97
SHOX2-202ENST00000425436 BTG4Q9NY30 223 aa21.11■□□□□ 0.97
SHOX2-202ENST00000425436 NSD2O96028 1365 aa21.11■□□□□ 0.97
SHOX2-202ENST00000425436 FNBP4Q8N3X1 1017 aaPredicted RBP21.1■□□□□ 0.97
SHOX2-202ENST00000425436 RGS17Q9UGC6 210 aaPredicted RBP21.1■□□□□ 0.97
SHOX2-202ENST00000425436 USP21Q9UK80 565 aa21.1■□□□□ 0.97
SHOX2-202ENST00000425436 LTN1O94822 1766 aa21.1■□□□□ 0.97
SHOX2-202ENST00000425436 AXIN2Q9Y2T1 843 aa21.09■□□□□ 0.97
SHOX2-202ENST00000425436 COL14A1Q05707 1796 aaKnown RBP21.09■□□□□ 0.97
SHOX2-202ENST00000425436 MAP3K19Q56UN5 1328 aa21.09■□□□□ 0.97
SHOX2-202ENST00000425436 PLCH1Q4KWH8 1693 aa21.08■□□□□ 0.97
SHOX2-202ENST00000425436 MAP2P11137 1827 aaKnown RBP21.08■□□□□ 0.97
SHOX2-202ENST00000425436 RGPD5Q99666 1765 aa21.07■□□□□ 0.96
SHOX2-202ENST00000425436 SLIT2O94813 1529 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms