RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 RARSP54136 660 aaKnown RBP14.13□□□□□ -0.15
DDX56-203ENST00000421223 CENPQQ7L2Z9 268 aaPredicted RBP14.13□□□□□ -0.15
DDX56-203ENST00000421223 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.13□□□□□ -0.15
DDX56-203ENST00000421223 NUDT16Q96DE0 195 aaKnown RBP14.13□□□□□ -0.15
DDX56-203ENST00000421223 MYH16Q9H6N6 1097 aa14.13□□□□□ -0.15
DDX56-203ENST00000421223 ALKQ9UM73 1620 aa14.13□□□□□ -0.15
DDX56-203ENST00000421223 RRS1Q15050 365 aaKnown RBP14.12□□□□□ -0.15
DDX56-203ENST00000421223 BACH2Q9BYV9 841 aa14.12□□□□□ -0.15
DDX56-203ENST00000421223 EXOSC9Q06265 439 aaKnown RBP14.12□□□□□ -0.15
DDX56-203ENST00000421223 WDR63Q8IWG1 891 aa14.12□□□□□ -0.15
DDX56-203ENST00000421223 IPO9Q96P70 1041 aaKnown RBP14.12□□□□□ -0.15
DDX56-203ENST00000421223 ZC3H13Q5T200 1668 aaKnown RBP14.11□□□□□ -0.15
DDX56-203ENST00000421223 NSD2O96028 1365 aa14.11□□□□□ -0.15
DDX56-203ENST00000421223 IGHDP01880 384 aa14.11□□□□□ -0.15
DDX56-203ENST00000421223 PRKAR2BP31323 418 aa14.11□□□□□ -0.15
DDX56-203ENST00000421223 THUMPD2Q9BTF0 503 aaKnown RBP14.1□□□□□ -0.15
DDX56-203ENST00000421223 RLBP1P12271 317 aa14.1□□□□□ -0.15
DDX56-203ENST00000421223 SMC4Q9NTJ3 1288 aa14.1□□□□□ -0.15
DDX56-203ENST00000421223 POLKQ9UBT6 870 aa14.1□□□□□ -0.15
DDX56-203ENST00000421223 ELL2O00472 640 aaPredicted RBP14.09□□□□□ -0.15
DDX56-203ENST00000421223 FTSJ3Q8IY81 847 aaKnown RBP14.09□□□□□ -0.15
DDX56-203ENST00000421223 TNRQ92752 1358 aa14.09□□□□□ -0.15
DDX56-203ENST00000421223 LTKP29376 864 aa14.08□□□□□ -0.16
DDX56-203ENST00000421223 CCDC61Q9Y6R9 512 aa14.08□□□□□ -0.16
DDX56-203ENST00000421223 NINLQ9Y2I6 1382 aa14.08□□□□□ -0.16
DDX56-203ENST00000421223 KDM2BQ8NHM5 1336 aa14.08□□□□□ -0.16
DDX56-203ENST00000421223 MS4A1P11836 297 aa14.08□□□□□ -0.16
DDX56-203ENST00000421223 COG3Q96JB2 828 aa14.08□□□□□ -0.16
DDX56-203ENST00000421223 TRIM35Q9UPQ4 493 aa14.07□□□□□ -0.16
DDX56-203ENST00000421223 PDE3AQ14432 1141 aa14.07□□□□□ -0.16
DDX56-203ENST00000421223 PMFBP1Q8TBY8 1022 aa14.07□□□□□ -0.16
DDX56-203ENST00000421223 PLEKHF1Q96S99 279 aa14.07□□□□□ -0.16
DDX56-203ENST00000421223 PPIP5K1Q6PFW1 1433 aa14.06□□□□□ -0.16
DDX56-203ENST00000421223 PHACTR3Q96KR7 559 aa14.06□□□□□ -0.16
DDX56-203ENST00000421223 CD163L1Q9NR16 1453 aa14.05□□□□□ -0.16
DDX56-203ENST00000421223 SLC4A3P48751 1232 aa14.05□□□□□ -0.16
DDX56-203ENST00000421223 EID1Q9Y6B2 187 aa14.05□□□□□ -0.16
DDX56-203ENST00000421223 ARHGEF40Q8TER5 1519 aa14.05□□□□□ -0.16
DDX56-203ENST00000421223 CCDC27Q2M243 656 aa14.04□□□□□ -0.16
DDX56-203ENST00000421223 PHF23Q9BUL5 403 aaPredicted RBP14.04□□□□□ -0.16
DDX56-203ENST00000421223 ITPRIPQ8IWB1 547 aa14.04□□□□□ -0.16
DDX56-203ENST00000421223 SSH1Q8WYL5 1049 aa14.04□□□□□ -0.16
DDX56-203ENST00000421223 AGLP35573 1532 aa14.04□□□□□ -0.16
DDX56-203ENST00000421223 ZKSCAN2Q63HK3 967 aa14.03□□□□□ -0.16
DDX56-203ENST00000421223 PCDHB15Q9Y5E8 787 aa14.03□□□□□ -0.16
DDX56-203ENST00000421223 PNNQ9H307 717 aaKnown RBP14.03□□□□□ -0.16
DDX56-203ENST00000421223 SHPRHQ149N8 1683 aa14.03□□□□□ -0.16
DDX56-203ENST00000421223 RBM33Q96EV2 1170 aaKnown RBP14.02□□□□□ -0.16
DDX56-203ENST00000421223 PRR36Q9H6K5 1346 aa14.02□□□□□ -0.16
DDX56-203ENST00000421223 FCHSD2O94868 740 aa14.02□□□□□ -0.17
DDX56-203ENST00000421223 DCTN1Q14203 1278 aa14.02□□□□□ -0.17
DDX56-203ENST00000421223 DZIP1LQ8IYY4 767 aaKnown RBP14.02□□□□□ -0.17
DDX56-203ENST00000421223 TMEM2Q9UHN6 1383 aa14.02□□□□□ -0.17
DDX56-203ENST00000421223 NOB1Q9ULX3 412 aaKnown RBP14.01□□□□□ -0.17
DDX56-203ENST00000421223 ROBO2Q9HCK4 1378 aa14.01□□□□□ -0.17
DDX56-203ENST00000421223 NUTM2GQ5VZR2 741 aa14.01□□□□□ -0.17
DDX56-203ENST00000421223 AMOTL2Q9Y2J4 779 aa14.01□□□□□ -0.17
DDX56-203ENST00000421223 FAM83GA6ND36 823 aa14.01□□□□□ -0.17
DDX56-203ENST00000421223 FAM161AQ3B820 660 aa14□□□□□ -0.17
DDX56-203ENST00000421223 RSPH6AQ9H0K4 717 aa14□□□□□ -0.17
DDX56-203ENST00000421223 ACEP12821 1306 aa14□□□□□ -0.17
DDX56-203ENST00000421223 SPATA31D1Q6ZQQ2 1576 aa14□□□□□ -0.17
DDX56-203ENST00000421223 C14orf37Q86TY3 774 aa14□□□□□ -0.17
DDX56-203ENST00000421223 NGDNQ8NEJ9 315 aaKnown RBP13.99□□□□□ -0.17
DDX56-203ENST00000421223 IQSEC2Q5JU85 1478 aa13.99□□□□□ -0.17
DDX56-203ENST00000421223 TRIM27P14373 513 aa13.99□□□□□ -0.17
DDX56-203ENST00000421223 AEBP1Q8IUX7 1158 aa13.98□□□□□ -0.17
DDX56-203ENST00000421223 SULT6B1Q6IMI4 303 aa13.98□□□□□ -0.17
DDX56-203ENST00000421223 MVPQ14764 893 aaKnown RBP13.97□□□□□ -0.17
DDX56-203ENST00000421223 NLRP1Q9C000 1473 aa13.97□□□□□ -0.17
DDX56-203ENST00000421223 ANO8Q9HCE9 1232 aaPredicted RBP13.97□□□□□ -0.17
DDX56-203ENST00000421223 IL13P35225 146 aa13.97□□□□□ -0.17
DDX56-203ENST00000421223 NFE2L2Q16236 605 aa13.97□□□□□ -0.17
DDX56-203ENST00000421223 C8orf34Q49A92 452 aa13.97□□□□□ -0.17
DDX56-203ENST00000421223 ZNF692Q9BU19 519 aaPredicted RBP13.97□□□□□ -0.17
DDX56-203ENST00000421223 HSP90AB2PQ58FF8 381 aa13.96□□□□□ -0.17
DDX56-203ENST00000421223 TSPYL6Q8N831 410 aa13.96□□□□□ -0.17
DDX56-203ENST00000421223 RWDD1Q9H446 243 aaPredicted RBP13.96□□□□□ -0.17
DDX56-203ENST00000421223 USP32Q8NFA0 1604 aa13.96□□□□□ -0.17
DDX56-203ENST00000421223 ATF7IPQ6VMQ6 1270 aa13.96□□□□□ -0.18
DDX56-203ENST00000421223 TMEM57Q8N5G2 664 aa13.96□□□□□ -0.18
DDX56-203ENST00000421223 PDZRN3Q9UPQ7 1066 aa13.96□□□□□ -0.18
DDX56-203ENST00000421223 KIF13AQ9H1H9 1805 aa13.95□□□□□ -0.18
DDX56-203ENST00000421223 ZBTB7CA1YPR0 619 aa13.95□□□□□ -0.18
DDX56-203ENST00000421223 PODXL2Q9NZ53 605 aa13.95□□□□□ -0.18
DDX56-203ENST00000421223 EDC4Q6P2E9 1401 aaKnown RBP13.95□□□□□ -0.18
DDX56-203ENST00000421223 TTC21BQ7Z4L5 1316 aa13.95□□□□□ -0.18
DDX56-203ENST00000421223 RTL5Q5HYW3 569 aaPredicted RBP13.95□□□□□ -0.18
DDX56-203ENST00000421223 REREQ9P2R6 1566 aa13.94□□□□□ -0.18
DDX56-203ENST00000421223 PNPLA6Q8IY17 1366 aa13.94□□□□□ -0.18
DDX56-203ENST00000421223 COL3A1P02461 1466 aaPredicted RBP13.94□□□□□ -0.18
DDX56-203ENST00000421223 THEMISQ8N1K5 641 aaPredicted RBP13.93□□□□□ -0.18
DDX56-203ENST00000421223 LTV1Q96GA3 475 aaPredicted RBP13.93□□□□□ -0.18
DDX56-203ENST00000421223 IPO8O15397 1037 aaKnown RBP13.93□□□□□ -0.18
DDX56-203ENST00000421223 C1orf115Q9H7X2 142 aa13.93□□□□□ -0.18
DDX56-203ENST00000421223 ATP7BP35670 1465 aa13.93□□□□□ -0.18
DDX56-203ENST00000421223 CPS1P31327 1500 aa13.92□□□□□ -0.18
DDX56-203ENST00000421223 EIF4A2Q14240 407 aaKnown RBP13.92□□□□□ -0.18
DDX56-203ENST00000421223 MCM10Q7L590 875 aa13.92□□□□□ -0.18
DDX56-203ENST00000421223 CPSF1Q10570 1443 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms