RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 NEUROD1Q13562 356 aa30.63■■■□□ 2.49
PTPN4-202ENST00000420482 VPS72Q15906 364 aa30.63■■■□□ 2.49
PTPN4-202ENST00000420482 CCDC9Q9Y3X0 531 aaKnown RBP30.63■■■□□ 2.49
PTPN4-202ENST00000420482 CRYBG1Q9Y4K1 1723 aa30.62■■■□□ 2.49
PTPN4-202ENST00000420482 SIN3AQ96ST3 1273 aa30.62■■■□□ 2.49
PTPN4-202ENST00000420482 SRPK2P78362 688 aaKnown RBP30.61■■■□□ 2.49
PTPN4-202ENST00000420482 BLMP54132 1417 aaPredicted RBP30.6■■■□□ 2.49
PTPN4-202ENST00000420482 FAM83GA6ND36 823 aa30.59■■■□□ 2.49
PTPN4-202ENST00000420482 ZRANB1Q9UGI0 708 aa30.59■■■□□ 2.49
PTPN4-202ENST00000420482 TOPAZ1Q8N9V7 1692 aa30.58■■■□□ 2.49
PTPN4-202ENST00000420482 POLR3AO14802 1390 aaPredicted RBP30.58■■■□□ 2.49
PTPN4-202ENST00000420482 ACEP12821 1306 aa30.58■■■□□ 2.49
PTPN4-202ENST00000420482 PLEKHG3A1L390 1219 aa30.58■■■□□ 2.49
PTPN4-202ENST00000420482 COL14A1Q05707 1796 aaKnown RBP30.58■■■□□ 2.49
PTPN4-202ENST00000420482 SRCAPQ6ZRS2 3230 aa30.55■■■□□ 2.48
PTPN4-202ENST00000420482 NBPF8Q3BBV2 869 aa30.55■■■□□ 2.48
PTPN4-202ENST00000420482 BTG4Q9NY30 223 aa30.55■■■□□ 2.48
PTPN4-202ENST00000420482 QRICH2Q9H0J4 1663 aa30.55■■■□□ 2.48
PTPN4-202ENST00000420482 SEPT12Q8IYM1 358 aa30.54■■■□□ 2.48
PTPN4-202ENST00000420482 ROCK2O75116 1388 aaKnown RBP30.54■■■□□ 2.48
PTPN4-202ENST00000420482 PRDM11Q9NQV5 511 aa30.53■■■□□ 2.48
PTPN4-202ENST00000420482 TRPM1Q7Z4N2 1603 aa30.53■■■□□ 2.48
PTPN4-202ENST00000420482 ONECUT3O60422 494 aaPredicted RBP30.52■■■□□ 2.48
PTPN4-202ENST00000420482 PPIP5K1Q6PFW1 1433 aa30.51■■■□□ 2.47
PTPN4-202ENST00000420482 CABP2Q9NPB3 220 aa30.49■■■□□ 2.47
PTPN4-202ENST00000420482 EVC2Q86UK5 1308 aa30.48■■■□□ 2.47
PTPN4-202ENST00000420482 A0A0G2JS52 829 aa30.48■■■□□ 2.47
PTPN4-202ENST00000420482 MYT1Q01538 1121 aa30.48■■■□□ 2.47
PTPN4-202ENST00000420482 ABTB2Q8N961 1025 aa30.48■■■□□ 2.47
PTPN4-202ENST00000420482 BRD4O60885 1362 aaPredicted RBP30.47■■■□□ 2.47
PTPN4-202ENST00000420482 PHRF1Q9P1Y6 1649 aaKnown RBP30.46■■■□□ 2.47
PTPN4-202ENST00000420482 NUTM2GQ5VZR2 741 aa30.44■■■□□ 2.46
PTPN4-202ENST00000420482 KRT27Q7Z3Y8 459 aa30.44■■■□□ 2.46
PTPN4-202ENST00000420482 KIAA0232Q92628 1395 aa30.43■■■□□ 2.46
PTPN4-202ENST00000420482 NLRP13Q86W25 1043 aa30.43■■■□□ 2.46
PTPN4-202ENST00000420482 SF3B2Q13435 895 aaKnown RBP30.42■■■□□ 2.46
PTPN4-202ENST00000420482 DEFB132Q7Z7B7 95 aa30.41■■■□□ 2.46
PTPN4-202ENST00000420482 THSD7AQ9UPZ6 1657 aa30.41■■■□□ 2.46
PTPN4-202ENST00000420482 RGPD1P0DJD0 1748 aa30.41■■■□□ 2.46
PTPN4-202ENST00000420482 TONSLQ96HA7 1378 aa30.41■■■□□ 2.46
PTPN4-202ENST00000420482 ZC3H6P61129 1189 aaKnown RBP30.4■■■□□ 2.46
PTPN4-202ENST00000420482 FAM98CQ17RN3 349 aaKnown RBP30.4■■■□□ 2.46
PTPN4-202ENST00000420482 CABP1Q9NZU7 370 aa30.4■■■□□ 2.46
PTPN4-202ENST00000420482 TRIM26Q12899 539 aaPredicted RBP30.39■■■□□ 2.46
PTPN4-202ENST00000420482 SPATA31A5Q5VU36 1347 aa30.39■■■□□ 2.46
PTPN4-202ENST00000420482 SPATA31A7Q8IWB4 1347 aa30.39■■■□□ 2.46
PTPN4-202ENST00000420482 CHRNA2Q15822 529 aa30.37■■■□□ 2.45
PTPN4-202ENST00000420482 EVA1CP58658 441 aa30.35■■■□□ 2.45
PTPN4-202ENST00000420482 USP19O94966 1318 aa30.35■■■□□ 2.45
PTPN4-202ENST00000420482 USP6P35125 1406 aa30.35■■■□□ 2.45
PTPN4-202ENST00000420482 LRP5O75197 1615 aa30.34■■■□□ 2.45
PTPN4-202ENST00000420482 STRN4Q9NRL3 753 aa30.34■■■□□ 2.45
PTPN4-202ENST00000420482 NRKQ7Z2Y5 1582 aa30.33■■■□□ 2.45
PTPN4-202ENST00000420482 CPDO75976 1380 aa30.33■■■□□ 2.45
PTPN4-202ENST00000420482 ZNF692Q9BU19 519 aaPredicted RBP30.33■■■□□ 2.45
PTPN4-202ENST00000420482 CARD11Q9BXL7 1154 aa30.33■■■□□ 2.45
PTPN4-202ENST00000420482 TNS1Q9HBL0 1735 aaKnown RBP30.33■■■□□ 2.45
PTPN4-202ENST00000420482 GCP02774 474 aa30.31■■■□□ 2.44
PTPN4-202ENST00000420482 SPATA31A1Q5TZJ5 1347 aa30.3■■■□□ 2.44
PTPN4-202ENST00000420482 NLRP6P59044 892 aa30.3■■■□□ 2.44
PTPN4-202ENST00000420482 SBNO2Q9Y2G9 1366 aa30.28■■■□□ 2.44
PTPN4-202ENST00000420482 BAG6P46379 1132 aa30.27■■■□□ 2.44
PTPN4-202ENST00000420482 SSH2Q76I76 1423 aa30.25■■■□□ 2.43
PTPN4-202ENST00000420482 USP35Q9P2H5 1018 aa30.23■■■□□ 2.43
PTPN4-202ENST00000420482 LMO7Q8WWI1 1683 aa30.23■■■□□ 2.43
PTPN4-202ENST00000420482 DISP2A7MBM2 1401 aa30.22■■■□□ 2.43
PTPN4-202ENST00000420482 TTC21AQ8NDW8 1320 aa30.22■■■□□ 2.43
PTPN4-202ENST00000420482 CAMTA1Q9Y6Y1 1673 aa30.21■■■□□ 2.43
PTPN4-202ENST00000420482 BARGINQ6ZT62 677 aa30.21■■■□□ 2.43
PTPN4-202ENST00000420482 TTC21BQ7Z4L5 1316 aa30.2■■■□□ 2.42
PTPN4-202ENST00000420482 KTN1Q86UP2 1357 aaKnown RBP30.19■■■□□ 2.42
PTPN4-202ENST00000420482 AKAP12Q02952 1782 aa30.19■■■□□ 2.42
PTPN4-202ENST00000420482 SLIT3O75094 1523 aa30.19■■■□□ 2.42
PTPN4-202ENST00000420482 ZBTB7CA1YPR0 619 aa30.19■■■□□ 2.42
PTPN4-202ENST00000420482 KCNH5Q8NCM2 988 aa30.19■■■□□ 2.42
PTPN4-202ENST00000420482 THRAP3Q9Y2W1 955 aaKnown RBP30.19■■■□□ 2.42
PTPN4-202ENST00000420482 FAM182BQ5T319 152 aa30.18■■■□□ 2.42
PTPN4-202ENST00000420482 LARP1Q6PKG0 1096 aaKnown RBP30.18■■■□□ 2.42
PTPN4-202ENST00000420482 TCP11L2Q8N4U5 519 aa30.18■■■□□ 2.42
PTPN4-202ENST00000420482 PIK3C2AO00443 1686 aa30.17■■■□□ 2.42
PTPN4-202ENST00000420482 AATKQ6ZMQ8 1374 aa30.16■■■□□ 2.42
PTPN4-202ENST00000420482 CPSF1Q10570 1443 aaKnown RBP30.16■■■□□ 2.42
PTPN4-202ENST00000420482 SLC24A1O60721 1099 aa30.16■■■□□ 2.42
PTPN4-202ENST00000420482 PDE3BQ13370 1112 aa30.16■■■□□ 2.42
PTPN4-202ENST00000420482 COL5A2P05997 1499 aaPredicted RBP30.15■■■□□ 2.42
PTPN4-202ENST00000420482 FAM196AQ6ZSG2 479 aa30.15■■■□□ 2.42
PTPN4-202ENST00000420482 EN1Q05925 392 aaPredicted RBP30.14■■■□□ 2.42
PTPN4-202ENST00000420482 PSDA5PKW4 1024 aaPredicted RBP30.12■■■□□ 2.41
PTPN4-202ENST00000420482 HDGFL2Q7Z4V5 671 aaPredicted RBP30.12■■■□□ 2.41
PTPN4-202ENST00000420482 TMC1Q8TDI8 760 aa30.12■■■□□ 2.41
PTPN4-202ENST00000420482 CRB1P82279 1406 aa30.12■■■□□ 2.41
PTPN4-202ENST00000420482 PUS7Q96PZ0 661 aaKnown RBP30.11■■■□□ 2.41
PTPN4-202ENST00000420482 RREB1Q92766 1687 aa30.11■■■□□ 2.41
PTPN4-202ENST00000420482 PARP4Q9UKK3 1724 aaKnown RBP30.1■■■□□ 2.41
PTPN4-202ENST00000420482 MON2Q7Z3U7 1717 aa30.08■■■□□ 2.41
PTPN4-202ENST00000420482 TERF2IPQ9NYB0 399 aa30.08■■■□□ 2.41
PTPN4-202ENST00000420482 C11orf95C9JLR9 678 aaPredicted RBP30.07■■■□□ 2.4
PTPN4-202ENST00000420482 TOM1L2Q6ZVM7 507 aa30.07■■■□□ 2.4
PTPN4-202ENST00000420482 ARHGEF25Q86VW2 580 aa30.06■■■□□ 2.4
PTPN4-202ENST00000420482 SOX12O15370 315 aa30.05■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms