RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 SH3D19Q5HYK7 790 aa7.86□□□□□ -1.15
HMGB3P20-201ENST00000417997 SNIP1Q8TAD8 396 aaKnown RBP7.86□□□□□ -1.15
HMGB3P20-201ENST00000417997 BAP1Q92560 729 aa7.86□□□□□ -1.15
HMGB3P20-201ENST00000417997 MAP10Q9P2G4 905 aa7.86□□□□□ -1.15
HMGB3P20-201ENST00000417997 PER1O15534 1290 aaPredicted RBP7.85□□□□□ -1.15
HMGB3P20-201ENST00000417997 PROCA1Q8NCQ7 364 aaPredicted RBP7.85□□□□□ -1.15
HMGB3P20-201ENST00000417997 ST8SIA5O15466 376 aa7.84□□□□□ -1.15
HMGB3P20-201ENST00000417997 SH3BP2P78314 561 aa7.84□□□□□ -1.15
HMGB3P20-201ENST00000417997 IL27Q8NEV9 243 aa7.84□□□□□ -1.15
HMGB3P20-201ENST00000417997 J3QL48 77 aa7.83□□□□□ -1.16
HMGB3P20-201ENST00000417997 ALDH1A1P00352 501 aa7.83□□□□□ -1.16
HMGB3P20-201ENST00000417997 SMPD1P17405 629 aa7.82□□□□□ -1.16
HMGB3P20-201ENST00000417997 ZNF511Q8NB15 262 aa7.82□□□□□ -1.16
HMGB3P20-201ENST00000417997 F12P00748 615 aaPredicted RBP7.81□□□□□ -1.16
HMGB3P20-201ENST00000417997 BRPF1P55201 1214 aaPredicted RBP7.81□□□□□ -1.16
HMGB3P20-201ENST00000417997 AGERQ15109 404 aa7.81□□□□□ -1.16
HMGB3P20-201ENST00000417997 AXIN1O15169 862 aa7.8□□□□□ -1.16
HMGB3P20-201ENST00000417997 CTDSPL2Q05D32 466 aa7.8□□□□□ -1.16
HMGB3P20-201ENST00000417997 ZNF787Q6DD87 383 aa7.8□□□□□ -1.16
HMGB3P20-201ENST00000417997 AAASQ9NRG9 546 aa7.8□□□□□ -1.16
HMGB3P20-201ENST00000417997 AP1G2O75843 785 aa7.79□□□□□ -1.16
HMGB3P20-201ENST00000417997 PCMTD1Q96MG8 357 aaPredicted RBP7.79□□□□□ -1.16
HMGB3P20-201ENST00000417997 WASF2Q9Y6W5 498 aa7.79□□□□□ -1.16
HMGB3P20-201ENST00000417997 HPS1Q92902 700 aa7.78□□□□□ -1.16
HMGB3P20-201ENST00000417997 FOXJ1Q92949 421 aa7.78□□□□□ -1.16
HMGB3P20-201ENST00000417997 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.78□□□□□ -1.16
HMGB3P20-201ENST00000417997 TLL2Q9Y6L7 1015 aa7.78□□□□□ -1.16
HMGB3P20-201ENST00000417997 AVPP01185 164 aa7.77□□□□□ -1.17
HMGB3P20-201ENST00000417997 VARSP26640 1264 aaKnown RBP7.77□□□□□ -1.17
HMGB3P20-201ENST00000417997 FBXO31Q5XUX0 539 aaPredicted RBP7.77□□□□□ -1.17
HMGB3P20-201ENST00000417997 ARMC2Q8NEN0 867 aa7.77□□□□□ -1.17
HMGB3P20-201ENST00000417997 LRRN4Q8WUT4 740 aa7.77□□□□□ -1.17
HMGB3P20-201ENST00000417997 SIAH2O43255 324 aa7.76□□□□□ -1.17
HMGB3P20-201ENST00000417997 ARID5BQ14865 1188 aa7.76□□□□□ -1.17
HMGB3P20-201ENST00000417997 CTC1Q2NKJ3 1217 aa7.76□□□□□ -1.17
HMGB3P20-201ENST00000417997 FAM174AQ8TBP5 190 aa7.76□□□□□ -1.17
HMGB3P20-201ENST00000417997 PRKCSHP14314 528 aaPredicted RBP7.75□□□□□ -1.17
HMGB3P20-201ENST00000417997 NBPF14Q5TI25 921 aa7.75□□□□□ -1.17
HMGB3P20-201ENST00000417997 PPP2R2DQ66LE6 453 aa7.75□□□□□ -1.17
HMGB3P20-201ENST00000417997 DACH1Q9UI36 760 aa7.75□□□□□ -1.17
HMGB3P20-201ENST00000417997 MAGEB6P1A0A0J9YX57 407 aa7.74□□□□□ -1.17
HMGB3P20-201ENST00000417997 POTECB2RU33 542 aa7.74□□□□□ -1.17
HMGB3P20-201ENST00000417997 BPHLQ86WA6 291 aaPredicted RBP7.74□□□□□ -1.17
HMGB3P20-201ENST00000417997 CRIPAKQ8N1N5 446 aa7.74□□□□□ -1.17
HMGB3P20-201ENST00000417997 RFC5P40937 340 aa7.73□□□□□ -1.17
HMGB3P20-201ENST00000417997 NR6A1Q15406 480 aa7.73□□□□□ -1.17
HMGB3P20-201ENST00000417997 CARD14Q9BXL6 1004 aa7.73□□□□□ -1.17
HMGB3P20-201ENST00000417997 USP17L8P0C7I0 530 aa7.72□□□□□ -1.17
HMGB3P20-201ENST00000417997 SMCPP49901 116 aaPredicted RBP7.72□□□□□ -1.17
HMGB3P20-201ENST00000417997 GOPCQ9HD26 462 aa7.72□□□□□ -1.17
HMGB3P20-201ENST00000417997 NNTQ13423 1086 aa7.71□□□□□ -1.18
HMGB3P20-201ENST00000417997 C4orf48Q5BLP8 95 aa7.71□□□□□ -1.18
HMGB3P20-201ENST00000417997 GMPR2Q9P2T1 348 aaKnown RBP7.71□□□□□ -1.18
HMGB3P20-201ENST00000417997 FKBPLQ9UIM3 349 aa7.7□□□□□ -1.18
HMGB3P20-201ENST00000417997 C11orf95C9JLR9 678 aaPredicted RBP7.69□□□□□ -1.18
HMGB3P20-201ENST00000417997 CAPN5O15484 640 aaPredicted RBP7.69□□□□□ -1.18
HMGB3P20-201ENST00000417997 ATP13A2Q9NQ11 1180 aa7.69□□□□□ -1.18
HMGB3P20-201ENST00000417997 ADH1CP00326 375 aa7.68□□□□□ -1.18
HMGB3P20-201ENST00000417997 TMEM259Q4ZIN3 620 aa7.68□□□□□ -1.18
HMGB3P20-201ENST00000417997 SH3BP5LQ7L8J4 393 aa7.68□□□□□ -1.18
HMGB3P20-201ENST00000417997 PNMA1Q8ND90 353 aa7.68□□□□□ -1.18
HMGB3P20-201ENST00000417997 EPS8L1Q8TE68 723 aa7.68□□□□□ -1.18
HMGB3P20-201ENST00000417997 GPKOWQ92917 476 aaPredicted RBP eCLIP7.68□□□□□ -1.18
HMGB3P20-201ENST00000417997 ARHGAP9Q9BRR9 750 aa7.68□□□□□ -1.18
HMGB3P20-201ENST00000417997 HMX1Q9NP08 348 aaPredicted RBP7.68□□□□□ -1.18
HMGB3P20-201ENST00000417997 BMP1P13497 986 aa7.67□□□□□ -1.18
HMGB3P20-201ENST00000417997 VASH1Q7L8A9 365 aaPredicted RBP7.67□□□□□ -1.18
HMGB3P20-201ENST00000417997 MPNDQ8N594 471 aa7.67□□□□□ -1.18
HMGB3P20-201ENST00000417997 WDR4P57081 412 aaKnown RBP7.66□□□□□ -1.18
HMGB3P20-201ENST00000417997 PDXDC2PQ6P474 469 aa7.66□□□□□ -1.18
HMGB3P20-201ENST00000417997 SH3RF1Q7Z6J0 888 aa7.66□□□□□ -1.18
HMGB3P20-201ENST00000417997 ZBTB33Q86T24 672 aa7.66□□□□□ -1.18
HMGB3P20-201ENST00000417997 CDK15Q96Q40 435 aa7.66□□□□□ -1.18
HMGB3P20-201ENST00000417997 FSHRP23945 695 aa7.65□□□□□ -1.18
HMGB3P20-201ENST00000417997 PTK2Q05397 1052 aa7.65□□□□□ -1.18
HMGB3P20-201ENST00000417997 ERFEQ4G0M1 354 aa7.65□□□□□ -1.18
HMGB3P20-201ENST00000417997 C1QTNF2Q9BXJ5 285 aa7.65□□□□□ -1.18
HMGB3P20-201ENST00000417997 ZC3H4Q9UPT8 1303 aaKnown RBP7.64□□□□□ -1.19
HMGB3P20-201ENST00000417997 NR3C2P08235 984 aa7.64□□□□□ -1.19
HMGB3P20-201ENST00000417997 NR5A1Q13285 461 aa7.64□□□□□ -1.19
HMGB3P20-201ENST00000417997 ZNF775Q96BV0 537 aaPredicted RBP7.64□□□□□ -1.19
HMGB3P20-201ENST00000417997 SLC10A4Q96EP9 437 aa7.64□□□□□ -1.19
HMGB3P20-201ENST00000417997 SENP2Q9HC62 589 aa7.64□□□□□ -1.19
HMGB3P20-201ENST00000417997 ZIC2O95409 532 aaPredicted RBP7.63□□□□□ -1.19
HMGB3P20-201ENST00000417997 SNRPBP14678 240 aaKnown RBP7.63□□□□□ -1.19
HMGB3P20-201ENST00000417997 GRM5P41594 1212 aa7.63□□□□□ -1.19
HMGB3P20-201ENST00000417997 TIMP2P16035 220 aa7.62□□□□□ -1.19
HMGB3P20-201ENST00000417997 TRMT44Q8IYL2 757 aaKnown RBP7.62□□□□□ -1.19
HMGB3P20-201ENST00000417997 ZFAND3Q9H8U3 227 aa7.62□□□□□ -1.19
HMGB3P20-201ENST00000417997 TRIM46Q7Z4K8 759 aa7.61□□□□□ -1.19
HMGB3P20-201ENST00000417997 ADAM32Q8TC27 787 aa7.61□□□□□ -1.19
HMGB3P20-201ENST00000417997 KIFC2Q96AC6 838 aa7.61□□□□□ -1.19
HMGB3P20-201ENST00000417997 ITPKCQ96DU7 683 aa7.61□□□□□ -1.19
HMGB3P20-201ENST00000417997 TRIM47Q96LD4 638 aa7.61□□□□□ -1.19
HMGB3P20-201ENST00000417997 TRIM34Q9BYJ4 488 aa7.61□□□□□ -1.19
HMGB3P20-201ENST00000417997 MAP4K5Q9Y4K4 846 aa7.61□□□□□ -1.19
HMGB3P20-201ENST00000417997 RAB15P59190 212 aa7.6□□□□□ -1.19
HMGB3P20-201ENST00000417997 SCARF1Q14162 830 aa7.6□□□□□ -1.19
HMGB3P20-201ENST00000417997 GPSM3Q9Y4H4 160 aa7.6□□□□□ -1.19
HMGB3P20-201ENST00000417997 MRPL14Q6P1L8 145 aaKnown RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms