RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CABP1Q9NZU7 370 aa17.52■□□□□ 0.4
SKA1-203ENST00000417656 MYOM1P52179 1685 aa17.52■□□□□ 0.39
SKA1-203ENST00000417656 CRYBG1Q9Y4K1 1723 aa17.51■□□□□ 0.39
SKA1-203ENST00000417656 USP6P35125 1406 aa17.5■□□□□ 0.39
SKA1-203ENST00000417656 TMF1P82094 1093 aa17.5■□□□□ 0.39
SKA1-203ENST00000417656 NUTM2BA6NNL0 878 aaPredicted RBP17.49■□□□□ 0.39
SKA1-203ENST00000417656 NUTM2EB1AL46 878 aaPredicted RBP17.49■□□□□ 0.39
SKA1-203ENST00000417656 NUTM2AQ8IVF1 878 aaPredicted RBP17.49■□□□□ 0.39
SKA1-203ENST00000417656 ARHGEF10O15013 1369 aa17.49■□□□□ 0.39
SKA1-203ENST00000417656 CD163L1Q9NR16 1453 aa17.49■□□□□ 0.39
SKA1-203ENST00000417656 MARF1Q9Y4F3 1742 aaKnown RBP17.48■□□□□ 0.39
SKA1-203ENST00000417656 PHRF1Q9P1Y6 1649 aaKnown RBP17.47■□□□□ 0.39
SKA1-203ENST00000417656 SLC24A1O60721 1099 aa17.47■□□□□ 0.39
SKA1-203ENST00000417656 LMOD2Q6P5Q4 547 aa17.47■□□□□ 0.39
SKA1-203ENST00000417656 PIK3C2AO00443 1686 aa17.47■□□□□ 0.39
SKA1-203ENST00000417656 CPSF1Q10570 1443 aaKnown RBP17.47■□□□□ 0.39
SKA1-203ENST00000417656 PAK3O75914 559 aaPredicted RBP17.46■□□□□ 0.39
SKA1-203ENST00000417656 TMC1Q8TDI8 760 aa17.46■□□□□ 0.39
SKA1-203ENST00000417656 PUS7Q96PZ0 661 aaKnown RBP17.46■□□□□ 0.39
SKA1-203ENST00000417656 NINLQ9Y2I6 1382 aa17.45■□□□□ 0.38
SKA1-203ENST00000417656 PLEKHG5O94827 1062 aa17.45■□□□□ 0.38
SKA1-203ENST00000417656 A0A1W2PP64 1363 aa17.44■□□□□ 0.38
SKA1-203ENST00000417656 SLC12A5Q9H2X9 1139 aa17.44■□□□□ 0.38
SKA1-203ENST00000417656 SSH2Q76I76 1423 aa17.44■□□□□ 0.38
SKA1-203ENST00000417656 KTN1Q86UP2 1357 aaKnown RBP17.43■□□□□ 0.38
SKA1-203ENST00000417656 MEX3CQ5U5Q3 659 aaKnown RBP17.43■□□□□ 0.38
SKA1-203ENST00000417656 BRD4O60885 1362 aaPredicted RBP17.42■□□□□ 0.38
SKA1-203ENST00000417656 CDCA8Q53HL2 280 aa17.42■□□□□ 0.38
SKA1-203ENST00000417656 ADAMTS2O95450 1211 aa17.41■□□□□ 0.38
SKA1-203ENST00000417656 CABLES1Q8TDN4 633 aa17.41■□□□□ 0.38
SKA1-203ENST00000417656 NUTM2GQ5VZR2 741 aa17.4■□□□□ 0.38
SKA1-203ENST00000417656 HDGFL2Q7Z4V5 671 aaPredicted RBP17.4■□□□□ 0.38
SKA1-203ENST00000417656 ANKRD36BQ8N2N9 1353 aa17.4■□□□□ 0.38
SKA1-203ENST00000417656 EDC4Q6P2E9 1401 aaKnown RBP17.39■□□□□ 0.38
SKA1-203ENST00000417656 PLCH1Q4KWH8 1693 aa17.39■□□□□ 0.37
SKA1-203ENST00000417656 USP54Q70EL1 1684 aa17.39■□□□□ 0.37
SKA1-203ENST00000417656 HAP1P54257 671 aaPredicted RBP17.39■□□□□ 0.37
SKA1-203ENST00000417656 POLR3GLQ9BT43 218 aa17.39■□□□□ 0.37
SKA1-203ENST00000417656 ZNF692Q9BU19 519 aaPredicted RBP17.39■□□□□ 0.37
SKA1-203ENST00000417656 TERF2IPQ9NYB0 399 aa17.39■□□□□ 0.37
SKA1-203ENST00000417656 TTC21BQ7Z4L5 1316 aa17.39■□□□□ 0.37
SKA1-203ENST00000417656 ABTB2Q8N961 1025 aa17.38■□□□□ 0.37
SKA1-203ENST00000417656 C8orf37Q96NL8 207 aa17.38■□□□□ 0.37
SKA1-203ENST00000417656 SLIT3O75094 1523 aa17.37■□□□□ 0.37
SKA1-203ENST00000417656 KIF20BQ96Q89 1820 aa17.36■□□□□ 0.37
SKA1-203ENST00000417656 USP19O94966 1318 aa17.36■□□□□ 0.37
SKA1-203ENST00000417656 TTC21AQ8NDW8 1320 aa17.36■□□□□ 0.37
SKA1-203ENST00000417656 C11orf95C9JLR9 678 aaPredicted RBP17.35■□□□□ 0.37
SKA1-203ENST00000417656 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.35■□□□□ 0.37
SKA1-203ENST00000417656 RGS17Q9UGC6 210 aaPredicted RBP17.35■□□□□ 0.37
SKA1-203ENST00000417656 AFF2P51816 1311 aa17.35■□□□□ 0.37
SKA1-203ENST00000417656 COL14A1Q05707 1796 aaKnown RBP17.34■□□□□ 0.37
SKA1-203ENST00000417656 NRAPQ86VF7 1730 aa17.33■□□□□ 0.37
SKA1-203ENST00000417656 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.33■□□□□ 0.37
SKA1-203ENST00000417656 NWD2Q9ULI1 1742 aa17.33■□□□□ 0.37
SKA1-203ENST00000417656 KIF7Q2M1P5 1343 aa17.33■□□□□ 0.36
SKA1-203ENST00000417656 NME9Q86XW9 330 aa17.33■□□□□ 0.36
SKA1-203ENST00000417656 NLRP6P59044 892 aa17.32■□□□□ 0.36
SKA1-203ENST00000417656 NLRP13Q86W25 1043 aa17.32■□□□□ 0.36
SKA1-203ENST00000417656 NGLY1Q96IV0 654 aa17.32■□□□□ 0.36
SKA1-203ENST00000417656 SLIT2O94813 1529 aa17.31■□□□□ 0.36
SKA1-203ENST00000417656 NSD3Q9BZ95 1437 aa17.31■□□□□ 0.36
SKA1-203ENST00000417656 ZRANB1Q9UGI0 708 aa17.31■□□□□ 0.36
SKA1-203ENST00000417656 NFAT5O94916 1531 aa17.31■□□□□ 0.36
SKA1-203ENST00000417656 OVOS2A0A0J9YW53 1432 aa17.3■□□□□ 0.36
SKA1-203ENST00000417656 OVOS2Q6IE36 1432 aa17.3■□□□□ 0.36
SKA1-203ENST00000417656 USP31Q70CQ4 1352 aa17.3■□□□□ 0.36
SKA1-203ENST00000417656 KIAA0232Q92628 1395 aa17.3■□□□□ 0.36
SKA1-203ENST00000417656 C1QBPQ07021 282 aaKnown RBP17.3■□□□□ 0.36
SKA1-203ENST00000417656 LMO7Q8WWI1 1683 aa17.29■□□□□ 0.36
SKA1-203ENST00000417656 CCDC7Q96M83 1385 aa17.28■□□□□ 0.36
SKA1-203ENST00000417656 ZEB1P37275 1124 aaPredicted RBP17.28■□□□□ 0.36
SKA1-203ENST00000417656 ZNF772Q68DY9 489 aaPredicted RBP17.28■□□□□ 0.36
SKA1-203ENST00000417656 POTEAQ6S8J7 498 aa17.28■□□□□ 0.36
SKA1-203ENST00000417656 BCL9LQ86UU0 1499 aa17.28■□□□□ 0.36
SKA1-203ENST00000417656 ZC3H6P61129 1189 aaKnown RBP17.27■□□□□ 0.36
SKA1-203ENST00000417656 FNBP4Q8N3X1 1017 aaPredicted RBP17.27■□□□□ 0.36
SKA1-203ENST00000417656 CARD14Q9BXL6 1004 aa17.27■□□□□ 0.36
SKA1-203ENST00000417656 PRDM11Q9NQV5 511 aa17.27■□□□□ 0.36
SKA1-203ENST00000417656 USP21Q9UK80 565 aa17.27■□□□□ 0.36
SKA1-203ENST00000417656 LTN1O94822 1766 aa17.27■□□□□ 0.35
SKA1-203ENST00000417656 CPDO75976 1380 aa17.27■□□□□ 0.35
SKA1-203ENST00000417656 SOX12O15370 315 aa17.26■□□□□ 0.35
SKA1-203ENST00000417656 GCP02774 474 aa17.26■□□□□ 0.35
SKA1-203ENST00000417656 ATRNO75882 1429 aa17.26■□□□□ 0.35
SKA1-203ENST00000417656 ANKRD26Q9UPS8 1709 aa17.26■□□□□ 0.35
SKA1-203ENST00000417656 WASHC2AQ641Q2 1341 aa17.25■□□□□ 0.35
SKA1-203ENST00000417656 FAM83GA6ND36 823 aa17.25■□□□□ 0.35
SKA1-203ENST00000417656 CHRNA2Q15822 529 aa17.25■□□□□ 0.35
SKA1-203ENST00000417656 COL18A1P39060 1754 aa17.24■□□□□ 0.35
SKA1-203ENST00000417656 ZBTB7CA1YPR0 619 aa17.23■□□□□ 0.35
SKA1-203ENST00000417656 PANK3Q9H999 370 aa17.23■□□□□ 0.35
SKA1-203ENST00000417656 CAMTA1Q9Y6Y1 1673 aa17.23■□□□□ 0.35
SKA1-203ENST00000417656 NCBP3Q53F19 620 aaKnown RBP17.22■□□□□ 0.35
SKA1-203ENST00000417656 ILDR2Q71H61 639 aa17.22■□□□□ 0.35
SKA1-203ENST00000417656 UNC5CLQ8IV45 518 aa17.22■□□□□ 0.35
SKA1-203ENST00000417656 KCNH5Q8NCM2 988 aa17.22■□□□□ 0.35
SKA1-203ENST00000417656 GGNBP2Q9H3C7 697 aa17.22■□□□□ 0.35
SKA1-203ENST00000417656 BTG4Q9NY30 223 aa17.22■□□□□ 0.35
SKA1-203ENST00000417656 GLI3P10071 1580 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms