RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 DDX10Q13206 875 aaKnown RBP11.61□□□□□ -0.55
TRIM48-201ENST00000417545 KIF20BQ96Q89 1820 aa11.61□□□□□ -0.55
TRIM48-201ENST00000417545 XPCQ01831 940 aaPredicted RBP11.6□□□□□ -0.55
TRIM48-201ENST00000417545 KRT28Q7Z3Y7 464 aa11.6□□□□□ -0.55
TRIM48-201ENST00000417545 PANK3Q9H999 370 aa11.6□□□□□ -0.55
TRIM48-201ENST00000417545 KNSTRNQ9Y448 316 aa11.6□□□□□ -0.55
TRIM48-201ENST00000417545 NSD3Q9BZ95 1437 aa11.6□□□□□ -0.55
TRIM48-201ENST00000417545 POLR3AO14802 1390 aaPredicted RBP11.6□□□□□ -0.55
TRIM48-201ENST00000417545 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.6□□□□□ -0.55
TRIM48-201ENST00000417545 USP6P35125 1406 aa11.59□□□□□ -0.55
TRIM48-201ENST00000417545 EDC4Q6P2E9 1401 aaKnown RBP11.59□□□□□ -0.55
TRIM48-201ENST00000417545 AHDC1Q5TGY3 1603 aaPredicted RBP11.59□□□□□ -0.55
TRIM48-201ENST00000417545 CNGB1Q14028 1251 aaPredicted RBP11.59□□□□□ -0.55
TRIM48-201ENST00000417545 DDX17Q92841 729 aaKnown RBP11.59□□□□□ -0.55
TRIM48-201ENST00000417545 BRD4O60885 1362 aaPredicted RBP11.58□□□□□ -0.56
TRIM48-201ENST00000417545 NRKQ7Z2Y5 1582 aa11.58□□□□□ -0.56
TRIM48-201ENST00000417545 PLEKHG5O94827 1062 aa11.58□□□□□ -0.56
TRIM48-201ENST00000417545 CPSF1Q10570 1443 aaKnown RBP11.58□□□□□ -0.56
TRIM48-201ENST00000417545 CGNL1Q0VF96 1302 aa11.57□□□□□ -0.56
TRIM48-201ENST00000417545 TTC21AQ8NDW8 1320 aa11.57□□□□□ -0.56
TRIM48-201ENST00000417545 CD163L1Q9NR16 1453 aa11.57□□□□□ -0.56
TRIM48-201ENST00000417545 HAP1P54257 671 aaPredicted RBP11.57□□□□□ -0.56
TRIM48-201ENST00000417545 TRPM3Q9HCF6 1732 aaPredicted RBP11.57□□□□□ -0.56
TRIM48-201ENST00000417545 PXDNQ92626 1479 aa11.56□□□□□ -0.56
TRIM48-201ENST00000417545 TNS3Q68CZ2 1445 aa11.56□□□□□ -0.56
TRIM48-201ENST00000417545 ABTB2Q8N961 1025 aa11.56□□□□□ -0.56
TRIM48-201ENST00000417545 ARHGEF10O15013 1369 aa11.56□□□□□ -0.56
TRIM48-201ENST00000417545 TTC21BQ7Z4L5 1316 aa11.55□□□□□ -0.56
TRIM48-201ENST00000417545 FBXO41Q8TF61 875 aa11.55□□□□□ -0.56
TRIM48-201ENST00000417545 LRRC59Q96AG4 307 aaKnown RBP11.55□□□□□ -0.56
TRIM48-201ENST00000417545 SBNO1A3KN83 1393 aa11.55□□□□□ -0.56
TRIM48-201ENST00000417545 COL16A1Q07092 1604 aaPredicted RBP11.55□□□□□ -0.56
TRIM48-201ENST00000417545 ANKRD26Q9UPS8 1709 aa11.55□□□□□ -0.56
TRIM48-201ENST00000417545 COG3Q96JB2 828 aa11.54□□□□□ -0.56
TRIM48-201ENST00000417545 PIK3C2AO00443 1686 aa11.54□□□□□ -0.56
TRIM48-201ENST00000417545 ALS2Q96Q42 1657 aa11.54□□□□□ -0.56
TRIM48-201ENST00000417545 SOS2Q07890 1332 aaPredicted RBP11.54□□□□□ -0.56
TRIM48-201ENST00000417545 NLRP6P59044 892 aa11.53□□□□□ -0.56
TRIM48-201ENST00000417545 NUTM2GQ5VZR2 741 aa11.53□□□□□ -0.56
TRIM48-201ENST00000417545 NLRP13Q86W25 1043 aa11.52□□□□□ -0.56
TRIM48-201ENST00000417545 NME9Q86XW9 330 aa11.52□□□□□ -0.56
TRIM48-201ENST00000417545 CARD14Q9BXL6 1004 aa11.52□□□□□ -0.56
TRIM48-201ENST00000417545 NSD2O96028 1365 aa11.52□□□□□ -0.56
TRIM48-201ENST00000417545 SPATA31A3Q5VYP0 1347 aa11.52□□□□□ -0.57
TRIM48-201ENST00000417545 SOX12O15370 315 aa11.52□□□□□ -0.57
TRIM48-201ENST00000417545 KCNA4P22459 653 aa11.52□□□□□ -0.57
TRIM48-201ENST00000417545 HSPA1LP34931 641 aa11.52□□□□□ -0.57
TRIM48-201ENST00000417545 CC2D1BQ5T0F9 858 aaKnown RBP11.52□□□□□ -0.57
TRIM48-201ENST00000417545 GGNBP2Q9H3C7 697 aa11.52□□□□□ -0.57
TRIM48-201ENST00000417545 SHPRHQ149N8 1683 aa11.51□□□□□ -0.57
TRIM48-201ENST00000417545 ZBTB7CA1YPR0 619 aa11.51□□□□□ -0.57
TRIM48-201ENST00000417545 MORC1Q86VD1 984 aa11.51□□□□□ -0.57
TRIM48-201ENST00000417545 PHRF1Q9P1Y6 1649 aaKnown RBP11.5□□□□□ -0.57
TRIM48-201ENST00000417545 JCADQ9P266 1359 aa11.5□□□□□ -0.57
TRIM48-201ENST00000417545 ANP32CO43423 234 aa11.5□□□□□ -0.57
TRIM48-201ENST00000417545 TNNT2P45379 298 aaPredicted RBP11.49□□□□□ -0.57
TRIM48-201ENST00000417545 NCBP3Q53F19 620 aaKnown RBP11.49□□□□□ -0.57
TRIM48-201ENST00000417545 SSH2Q76I76 1423 aa11.49□□□□□ -0.57
TRIM48-201ENST00000417545 USP54Q70EL1 1684 aa11.48□□□□□ -0.57
TRIM48-201ENST00000417545 PNPLA6Q8IY17 1366 aa11.48□□□□□ -0.57
TRIM48-201ENST00000417545 ABCA3Q99758 1704 aa11.48□□□□□ -0.57
TRIM48-201ENST00000417545 MED1Q15648 1581 aaPredicted RBP11.48□□□□□ -0.57
TRIM48-201ENST00000417545 NUTM2BA6NNL0 878 aaPredicted RBP11.48□□□□□ -0.57
TRIM48-201ENST00000417545 NUTM2EB1AL46 878 aaPredicted RBP11.48□□□□□ -0.57
TRIM48-201ENST00000417545 FYB1O15117 783 aa11.48□□□□□ -0.57
TRIM48-201ENST00000417545 DIEXFQ68CQ4 756 aaKnown RBP11.48□□□□□ -0.57
TRIM48-201ENST00000417545 NUTM2AQ8IVF1 878 aaPredicted RBP11.48□□□□□ -0.57
TRIM48-201ENST00000417545 KCNH5Q8NCM2 988 aa11.48□□□□□ -0.57
TRIM48-201ENST00000417545 COL22A1Q8NFW1 1626 aaPredicted RBP11.48□□□□□ -0.57
TRIM48-201ENST00000417545 MEX3CQ5U5Q3 659 aaKnown RBP11.47□□□□□ -0.57
TRIM48-201ENST00000417545 ZRANB1Q9UGI0 708 aa11.47□□□□□ -0.57
TRIM48-201ENST00000417545 USP31Q70CQ4 1352 aa11.47□□□□□ -0.57
TRIM48-201ENST00000417545 NPC1L1Q9UHC9 1359 aa11.47□□□□□ -0.57
TRIM48-201ENST00000417545 OVOS2A0A0J9YW53 1432 aa11.46□□□□□ -0.57
TRIM48-201ENST00000417545 OVOS2Q6IE36 1432 aa11.46□□□□□ -0.57
TRIM48-201ENST00000417545 PER1O15534 1290 aaPredicted RBP11.46□□□□□ -0.57
TRIM48-201ENST00000417545 AMER1Q5JTC6 1135 aaPredicted RBP11.46□□□□□ -0.57
TRIM48-201ENST00000417545 MARF1Q9Y4F3 1742 aaKnown RBP11.46□□□□□ -0.57
TRIM48-201ENST00000417545 LTN1O94822 1766 aa11.46□□□□□ -0.57
TRIM48-201ENST00000417545 CRYBG1Q9Y4K1 1723 aa11.45□□□□□ -0.58
TRIM48-201ENST00000417545 CABLES1Q8TDN4 633 aa11.45□□□□□ -0.58
TRIM48-201ENST00000417545 SLIT3O75094 1523 aa11.45□□□□□ -0.58
TRIM48-201ENST00000417545 PPM1GO15355 546 aaPredicted RBP11.44□□□□□ -0.58
TRIM48-201ENST00000417545 DSG3P32926 999 aa11.44□□□□□ -0.58
TRIM48-201ENST00000417545 RALBP1Q15311 655 aa11.44□□□□□ -0.58
TRIM48-201ENST00000417545 USP19O94966 1318 aa11.44□□□□□ -0.58
TRIM48-201ENST00000417545 SPATA31A6Q5VVP1 1343 aa11.44□□□□□ -0.58
TRIM48-201ENST00000417545 MAP2P11137 1827 aaKnown RBP11.44□□□□□ -0.58
TRIM48-201ENST00000417545 GCP02774 474 aa11.43□□□□□ -0.58
TRIM48-201ENST00000417545 AMPHP49418 695 aa11.43□□□□□ -0.58
TRIM48-201ENST00000417545 ZC3H6P61129 1189 aaKnown RBP11.43□□□□□ -0.58
TRIM48-201ENST00000417545 PRDM11Q9NQV5 511 aa11.43□□□□□ -0.58
TRIM48-201ENST00000417545 ADAMTS2O95450 1211 aa11.43□□□□□ -0.58
TRIM48-201ENST00000417545 SPINK5Q9NQ38 1064 aaPredicted RBP11.43□□□□□ -0.58
TRIM48-201ENST00000417545 CFAP53Q96M91 514 aa11.42□□□□□ -0.58
TRIM48-201ENST00000417545 CAPN15O75808 1086 aa11.41□□□□□ -0.58
TRIM48-201ENST00000417545 NFAT5O94916 1531 aa11.41□□□□□ -0.58
TRIM48-201ENST00000417545 COL14A1Q05707 1796 aaKnown RBP11.41□□□□□ -0.58
TRIM48-201ENST00000417545 RRS1Q15050 365 aaKnown RBP11.41□□□□□ -0.58
TRIM48-201ENST00000417545 PARD3Q8TEW0 1356 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms