RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 UPF1Q92900 1129 aaKnown RBP eCLIP19.98■□□□□ 0.79
USP4-203ENST00000415188 ADGRB2O60241 1585 aa19.97■□□□□ 0.79
USP4-203ENST00000415188 USP32Q8NFA0 1604 aa19.97■□□□□ 0.79
USP4-203ENST00000415188 SMG6Q86US8 1419 aaKnown RBP19.96■□□□□ 0.79
USP4-203ENST00000415188 NBPF1Q3BBV0 1214 aa19.96■□□□□ 0.79
USP4-203ENST00000415188 PMFBP1Q8TBY8 1022 aa19.96■□□□□ 0.79
USP4-203ENST00000415188 TSHZ2Q9NRE2 1034 aa19.96■□□□□ 0.79
USP4-203ENST00000415188 TRPC5Q9UL62 973 aaPredicted RBP19.95■□□□□ 0.78
USP4-203ENST00000415188 ANKARQ7Z5J8 1434 aa19.95■□□□□ 0.78
USP4-203ENST00000415188 PARD3Q8TEW0 1356 aa19.94■□□□□ 0.78
USP4-203ENST00000415188 PLEKHG5O94827 1062 aa19.94■□□□□ 0.78
USP4-203ENST00000415188 TESK2Q96S53 571 aa19.94■□□□□ 0.78
USP4-203ENST00000415188 ATRNO75882 1429 aa19.94■□□□□ 0.78
USP4-203ENST00000415188 TNS3Q68CZ2 1445 aa19.94■□□□□ 0.78
USP4-203ENST00000415188 PRR36Q9H6K5 1346 aa19.94■□□□□ 0.78
USP4-203ENST00000415188 PSME1Q06323 249 aa19.93■□□□□ 0.78
USP4-203ENST00000415188 PNISRQ8TF01 805 aaKnown RBP19.93■□□□□ 0.78
USP4-203ENST00000415188 BCL9LQ86UU0 1499 aa19.93■□□□□ 0.78
USP4-203ENST00000415188 MARF1Q9Y4F3 1742 aaKnown RBP19.93■□□□□ 0.78
USP4-203ENST00000415188 TMF1P82094 1093 aa19.92■□□□□ 0.78
USP4-203ENST00000415188 TMC1Q8TDI8 760 aa19.92■□□□□ 0.78
USP4-203ENST00000415188 INSRP06213 1382 aa19.92■□□□□ 0.78
USP4-203ENST00000415188 WASLO00401 505 aaPredicted RBP19.92■□□□□ 0.78
USP4-203ENST00000415188 CABLES1Q8TDN4 633 aa19.92■□□□□ 0.78
USP4-203ENST00000415188 SBNO1A3KN83 1393 aa19.91■□□□□ 0.78
USP4-203ENST00000415188 LMOD2Q6P5Q4 547 aa19.91■□□□□ 0.78
USP4-203ENST00000415188 TULP4Q9NRJ4 1543 aa19.9■□□□□ 0.78
USP4-203ENST00000415188 ARHGEF28Q8N1W1 1705 aaKnown RBP19.9■□□□□ 0.78
USP4-203ENST00000415188 EIF3AQ14152 1382 aaKnown RBP19.88■□□□□ 0.77
USP4-203ENST00000415188 HAP1P54257 671 aaPredicted RBP19.87■□□□□ 0.77
USP4-203ENST00000415188 NLRP13Q86W25 1043 aa19.87■□□□□ 0.77
USP4-203ENST00000415188 SLIT2O94813 1529 aa19.87■□□□□ 0.77
USP4-203ENST00000415188 ARHGEF10O15013 1369 aa19.86■□□□□ 0.77
USP4-203ENST00000415188 PER1O15534 1290 aaPredicted RBP19.86■□□□□ 0.77
USP4-203ENST00000415188 CDCA8Q53HL2 280 aa19.86■□□□□ 0.77
USP4-203ENST00000415188 NUDCQ9Y266 331 aa19.86■□□□□ 0.77
USP4-203ENST00000415188 SLC24A1O60721 1099 aa19.85■□□□□ 0.77
USP4-203ENST00000415188 UNC5CLQ8IV45 518 aa19.85■□□□□ 0.77
USP4-203ENST00000415188 GJD4Q96KN9 370 aaPredicted RBP19.85■□□□□ 0.77
USP4-203ENST00000415188 PPP4R2Q9NY27 417 aa19.85■□□□□ 0.77
USP4-203ENST00000415188 TRPM3Q9HCF6 1732 aaPredicted RBP19.84■□□□□ 0.77
USP4-203ENST00000415188 ABCA3Q99758 1704 aa19.83■□□□□ 0.77
USP4-203ENST00000415188 ATP7BP35670 1465 aa19.83■□□□□ 0.77
USP4-203ENST00000415188 NGDNQ8NEJ9 315 aaKnown RBP19.83■□□□□ 0.76
USP4-203ENST00000415188 NUDT16Q96DE0 195 aaKnown RBP19.83■□□□□ 0.76
USP4-203ENST00000415188 CDK19Q9BWU1 502 aa19.82■□□□□ 0.76
USP4-203ENST00000415188 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.82■□□□□ 0.76
USP4-203ENST00000415188 ATAD2Q6PL18 1390 aa19.81■□□□□ 0.76
USP4-203ENST00000415188 ALS2Q96Q42 1657 aa19.8■□□□□ 0.76
USP4-203ENST00000415188 RNF123Q5XPI4 1314 aa19.8■□□□□ 0.76
USP4-203ENST00000415188 GLI3P10071 1580 aa19.8■□□□□ 0.76
USP4-203ENST00000415188 FAM83GA6ND36 823 aa19.79■□□□□ 0.76
USP4-203ENST00000415188 PAK3O75914 559 aaPredicted RBP19.79■□□□□ 0.76
USP4-203ENST00000415188 PLCH1Q4KWH8 1693 aa19.78■□□□□ 0.76
USP4-203ENST00000415188 MYT1Q01538 1121 aa19.77■□□□□ 0.76
USP4-203ENST00000415188 PANK3Q9H999 370 aa19.77■□□□□ 0.76
USP4-203ENST00000415188 ITSN1Q15811 1721 aa19.77■□□□□ 0.76
USP4-203ENST00000415188 MYOM1P52179 1685 aa19.77■□□□□ 0.75
USP4-203ENST00000415188 CNGB1Q14028 1251 aaPredicted RBP19.75■□□□□ 0.75
USP4-203ENST00000415188 VPS72Q15906 364 aa19.75■□□□□ 0.75
USP4-203ENST00000415188 NPC1L1Q9UHC9 1359 aa19.75■□□□□ 0.75
USP4-203ENST00000415188 CENPJQ9HC77 1338 aaPredicted RBP19.75■□□□□ 0.75
USP4-203ENST00000415188 BLMP54132 1417 aaPredicted RBP19.75■□□□□ 0.75
USP4-203ENST00000415188 PDE3BQ13370 1112 aa19.74■□□□□ 0.75
USP4-203ENST00000415188 CCDC9Q9Y3X0 531 aaKnown RBP19.74■□□□□ 0.75
USP4-203ENST00000415188 NWD2Q9ULI1 1742 aa19.74■□□□□ 0.75
USP4-203ENST00000415188 TOPAZ1Q8N9V7 1692 aa19.74■□□□□ 0.75
USP4-203ENST00000415188 ACEP12821 1306 aa19.74■□□□□ 0.75
USP4-203ENST00000415188 CCDC61Q9Y6R9 512 aa19.73■□□□□ 0.75
USP4-203ENST00000415188 POLR3AO14802 1390 aaPredicted RBP19.73■□□□□ 0.75
USP4-203ENST00000415188 EP400Q96L91 3159 aa19.72■□□□□ 0.75
USP4-203ENST00000415188 CRYBG1Q9Y4K1 1723 aa19.72■□□□□ 0.75
USP4-203ENST00000415188 SBNO2Q9Y2G9 1366 aa19.72■□□□□ 0.75
USP4-203ENST00000415188 IRX6P78412 446 aaPredicted RBP19.72■□□□□ 0.75
USP4-203ENST00000415188 BTG4Q9NY30 223 aa19.72■□□□□ 0.75
USP4-203ENST00000415188 PLEKHG3A1L390 1219 aa19.71■□□□□ 0.75
USP4-203ENST00000415188 SRPK2P78362 688 aaKnown RBP19.71■□□□□ 0.75
USP4-203ENST00000415188 NUTM2GQ5VZR2 741 aa19.71■□□□□ 0.75
USP4-203ENST00000415188 SEPT12Q8IYM1 358 aa19.71■□□□□ 0.75
USP4-203ENST00000415188 CABP2Q9NPB3 220 aa19.71■□□□□ 0.75
USP4-203ENST00000415188 NRAPQ86VF7 1730 aa19.7■□□□□ 0.74
USP4-203ENST00000415188 COL14A1Q05707 1796 aaKnown RBP19.69■□□□□ 0.74
USP4-203ENST00000415188 QRICH2Q9H0J4 1663 aa19.69■□□□□ 0.74
USP4-203ENST00000415188 KNSTRNQ9Y448 316 aa19.68■□□□□ 0.74
USP4-203ENST00000415188 PPIP5K1Q6PFW1 1433 aa19.68■□□□□ 0.74
USP4-203ENST00000415188 BRWD3Q6RI45 1802 aa19.68■□□□□ 0.74
USP4-203ENST00000415188 PRDM11Q9NQV5 511 aa19.67■□□□□ 0.74
USP4-203ENST00000415188 ONECUT3O60422 494 aaPredicted RBP19.67■□□□□ 0.74
USP4-203ENST00000415188 KIAA0232Q92628 1395 aa19.66■□□□□ 0.74
USP4-203ENST00000415188 CHRNA2Q15822 529 aa19.66■□□□□ 0.74
USP4-203ENST00000415188 CC2D1BQ5T0F9 858 aaKnown RBP19.66■□□□□ 0.74
USP4-203ENST00000415188 PHRF1Q9P1Y6 1649 aaKnown RBP19.65■□□□□ 0.74
USP4-203ENST00000415188 FAM98CQ17RN3 349 aaKnown RBP19.65■□□□□ 0.74
USP4-203ENST00000415188 A0A0G2JS52 829 aa19.64■□□□□ 0.73
USP4-203ENST00000415188 ZC3H6P61129 1189 aaKnown RBP19.64■□□□□ 0.73
USP4-203ENST00000415188 AMER1Q5JTC6 1135 aaPredicted RBP19.63■□□□□ 0.73
USP4-203ENST00000415188 ABTB2Q8N961 1025 aa19.63■□□□□ 0.73
USP4-203ENST00000415188 CABP1Q9NZU7 370 aa19.63■□□□□ 0.73
USP4-203ENST00000415188 RBM19Q9Y4C8 960 aaKnown RBP19.63■□□□□ 0.73
USP4-203ENST00000415188 KRT27Q7Z3Y8 459 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms