RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 HDAC1Q13547 482 aaPredicted RBP12.43□□□□□ -0.42
CD44-206ENST00000415148 ATAD2Q6PL18 1390 aa12.43□□□□□ -0.42
CD44-206ENST00000415148 TMPOP42166 694 aaKnown RBP12.43□□□□□ -0.42
CD44-206ENST00000415148 FAM43AQ8N2R8 423 aa12.43□□□□□ -0.42
CD44-206ENST00000415148 COL3A1P02461 1466 aaPredicted RBP12.43□□□□□ -0.42
CD44-206ENST00000415148 CLTCQ00610 1675 aaKnown RBP12.43□□□□□ -0.42
CD44-206ENST00000415148 FTSJ3Q8IY81 847 aaKnown RBP12.42□□□□□ -0.42
CD44-206ENST00000415148 DDX19BQ9UMR2 479 aa12.42□□□□□ -0.42
CD44-206ENST00000415148 CABP2Q9NPB3 220 aa12.42□□□□□ -0.42
CD44-206ENST00000415148 TERF2IPQ9NYB0 399 aa12.42□□□□□ -0.42
CD44-206ENST00000415148 A0A1W2PP64 1363 aa12.42□□□□□ -0.42
CD44-206ENST00000415148 TRIM35Q9UPQ4 493 aa12.41□□□□□ -0.42
CD44-206ENST00000415148 GZF1Q9H116 711 aaPredicted RBP12.4□□□□□ -0.42
CD44-206ENST00000415148 DIP2CQ9Y2E4 1556 aa12.4□□□□□ -0.42
CD44-206ENST00000415148 EXOSC9Q06265 439 aaKnown RBP12.4□□□□□ -0.43
CD44-206ENST00000415148 ATF7IPQ6VMQ6 1270 aa12.4□□□□□ -0.43
CD44-206ENST00000415148 PANK2Q9BZ23 570 aa12.4□□□□□ -0.43
CD44-206ENST00000415148 SMC4Q9NTJ3 1288 aa12.4□□□□□ -0.43
CD44-206ENST00000415148 PNPLA6Q8IY17 1366 aa12.4□□□□□ -0.43
CD44-206ENST00000415148 IPO8O15397 1037 aaKnown RBP12.39□□□□□ -0.43
CD44-206ENST00000415148 IDI1Q13907 227 aa12.39□□□□□ -0.43
CD44-206ENST00000415148 PTPRMP28827 1452 aa12.39□□□□□ -0.43
CD44-206ENST00000415148 FYB1O15117 783 aa12.38□□□□□ -0.43
CD44-206ENST00000415148 TRIM27P14373 513 aa12.38□□□□□ -0.43
CD44-206ENST00000415148 ALDH1L2Q3SY69 923 aa12.38□□□□□ -0.43
CD44-206ENST00000415148 SMC5Q8IY18 1101 aa12.38□□□□□ -0.43
CD44-206ENST00000415148 ZNF428Q96B54 188 aa12.38□□□□□ -0.43
CD44-206ENST00000415148 XRCC6P12956 609 aaKnown RBP eCLIP12.38□□□□□ -0.43
CD44-206ENST00000415148 SRPK2P78362 688 aaKnown RBP12.38□□□□□ -0.43
CD44-206ENST00000415148 TSR2Q969E8 191 aaKnown RBP12.38□□□□□ -0.43
CD44-206ENST00000415148 TMEM131LA2VDJ0 1609 aa12.38□□□□□ -0.43
CD44-206ENST00000415148 KIF16BQ96L93 1317 aa12.38□□□□□ -0.43
CD44-206ENST00000415148 U2SURPO15042 1029 aaKnown RBP12.37□□□□□ -0.43
CD44-206ENST00000415148 BRPF1P55201 1214 aaPredicted RBP12.37□□□□□ -0.43
CD44-206ENST00000415148 CYB5RLQ6IPT4 315 aa12.37□□□□□ -0.43
CD44-206ENST00000415148 SSH1Q8WYL5 1049 aa12.37□□□□□ -0.43
CD44-206ENST00000415148 CDC42BPGQ6DT37 1551 aa12.37□□□□□ -0.43
CD44-206ENST00000415148 CD163L1Q9NR16 1453 aa12.37□□□□□ -0.43
CD44-206ENST00000415148 DIAPH1O60610 1272 aaKnown RBP12.37□□□□□ -0.43
CD44-206ENST00000415148 FCHSD2O94868 740 aa12.36□□□□□ -0.43
CD44-206ENST00000415148 HDGFL2Q7Z4V5 671 aaPredicted RBP12.36□□□□□ -0.43
CD44-206ENST00000415148 GGNBP2Q9H3C7 697 aa12.36□□□□□ -0.43
CD44-206ENST00000415148 MFAP1P55081 439 aaKnown RBP12.36□□□□□ -0.43
CD44-206ENST00000415148 RIPK4P57078 832 aa12.36□□□□□ -0.43
CD44-206ENST00000415148 NUTM2DQ5VT03 806 aaPredicted RBP12.36□□□□□ -0.43
CD44-206ENST00000415148 C22orf23Q9BZE7 217 aa12.36□□□□□ -0.43
CD44-206ENST00000415148 CHMP4BQ9H444 224 aaKnown RBP12.36□□□□□ -0.43
CD44-206ENST00000415148 ZBTB40Q9NUA8 1239 aa12.36□□□□□ -0.43
CD44-206ENST00000415148 NOB1Q9ULX3 412 aaKnown RBP12.36□□□□□ -0.43
CD44-206ENST00000415148 PREX1Q8TCU6 1659 aa12.36□□□□□ -0.43
CD44-206ENST00000415148 YTHDC2Q9H6S0 1430 aaKnown RBP12.35□□□□□ -0.43
CD44-206ENST00000415148 L1TD1Q5T7N2 865 aaKnown RBP12.35□□□□□ -0.43
CD44-206ENST00000415148 RICTORQ6R327 1708 aa12.35□□□□□ -0.43
CD44-206ENST00000415148 ITPRIPQ8IWB1 547 aa12.35□□□□□ -0.43
CD44-206ENST00000415148 KIF20BQ96Q89 1820 aa12.35□□□□□ -0.43
CD44-206ENST00000415148 PPIP5K1Q6PFW1 1433 aa12.34□□□□□ -0.43
CD44-206ENST00000415148 MCM4P33991 863 aa12.34□□□□□ -0.43
CD44-206ENST00000415148 DNAJC5Q9H3Z4 198 aa12.34□□□□□ -0.43
CD44-206ENST00000415148 SENP3Q9H4L4 574 aaPredicted RBP12.34□□□□□ -0.43
CD44-206ENST00000415148 MYO5BQ9ULV0 1848 aa12.34□□□□□ -0.43
CD44-206ENST00000415148 FSD2A1L4K1 749 aa12.33□□□□□ -0.44
CD44-206ENST00000415148 RAPGEF3O95398 923 aa12.33□□□□□ -0.44
CD44-206ENST00000415148 UBE2Q2Q8WVN8 375 aa12.33□□□□□ -0.44
CD44-206ENST00000415148 STK26Q9P289 416 aa12.33□□□□□ -0.44
CD44-206ENST00000415148 ARHGEF40Q8TER5 1519 aa12.33□□□□□ -0.44
CD44-206ENST00000415148 SAFB2Q14151 953 aaKnown RBP eCLIP12.33□□□□□ -0.44
CD44-206ENST00000415148 TMEM57Q8N5G2 664 aa12.33□□□□□ -0.44
CD44-206ENST00000415148 PRAM1Q96QH2 718 aa12.33□□□□□ -0.44
CD44-206ENST00000415148 RSPH6AQ9H0K4 717 aa12.33□□□□□ -0.44
CD44-206ENST00000415148 CHMP5Q9NZZ3 219 aa12.33□□□□□ -0.44
CD44-206ENST00000415148 ALKQ9UM73 1620 aa12.32□□□□□ -0.44
CD44-206ENST00000415148 NUCB1Q02818 461 aa12.32□□□□□ -0.44
CD44-206ENST00000415148 CALD1Q05682 793 aaKnown RBP12.32□□□□□ -0.44
CD44-206ENST00000415148 ARHGAP45Q92619 1136 aa12.32□□□□□ -0.44
CD44-206ENST00000415148 ZNF692Q9BU19 519 aaPredicted RBP12.32□□□□□ -0.44
CD44-206ENST00000415148 DLC1Q96QB1 1528 aa12.31□□□□□ -0.44
CD44-206ENST00000415148 MINK1Q8N4C8 1332 aaPredicted RBP12.31□□□□□ -0.44
CD44-206ENST00000415148 RBM25P49756 843 aaKnown RBP12.31□□□□□ -0.44
CD44-206ENST00000415148 CDK19Q9BWU1 502 aa12.31□□□□□ -0.44
CD44-206ENST00000415148 ATP7BP35670 1465 aa12.31□□□□□ -0.44
CD44-206ENST00000415148 FAM135BQ49AJ0 1406 aa12.31□□□□□ -0.44
CD44-206ENST00000415148 SNX21Q969T3 373 aa12.3□□□□□ -0.44
CD44-206ENST00000415148 GOLGA6L3A6NEY3 463 aa12.29□□□□□ -0.44
CD44-206ENST00000415148 TRAK2O60296 914 aa12.29□□□□□ -0.44
CD44-206ENST00000415148 GCC1Q96CN9 775 aa12.29□□□□□ -0.44
CD44-206ENST00000415148 PIK3R4Q99570 1358 aa12.29□□□□□ -0.44
CD44-206ENST00000415148 LRRC7Q96NW7 1537 aa12.29□□□□□ -0.44
CD44-206ENST00000415148 CHD1LQ86WJ1 897 aa12.28□□□□□ -0.44
CD44-206ENST00000415148 HSCBQ8IWL3 235 aa12.28□□□□□ -0.44
CD44-206ENST00000415148 CABP1Q9NZU7 370 aa12.28□□□□□ -0.44
CD44-206ENST00000415148 PPP6R1Q9UPN7 881 aa12.28□□□□□ -0.44
CD44-206ENST00000415148 NFE2L2Q16236 605 aa12.28□□□□□ -0.44
CD44-206ENST00000415148 NCOA3Q9Y6Q9 1424 aa12.27□□□□□ -0.44
CD44-206ENST00000415148 ZBTB7BO15156 539 aaPredicted RBP12.27□□□□□ -0.44
CD44-206ENST00000415148 BMP2KLQ5H9B9 411 aa12.27□□□□□ -0.44
CD44-206ENST00000415148 POLKQ9UBT6 870 aa12.27□□□□□ -0.44
CD44-206ENST00000415148 REREQ9P2R6 1566 aa12.27□□□□□ -0.45
CD44-206ENST00000415148 PTCH1Q13635 1447 aa12.27□□□□□ -0.45
CD44-206ENST00000415148 YEATS2Q9ULM3 1422 aa12.27□□□□□ -0.45
CD44-206ENST00000415148 GNAI1P63096 354 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 132 ms