RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 CD46P15529 392 aa5.74□□□□□ -1.49
SF3B1-203ENST00000414174 SH3BP2P78314 561 aa5.74□□□□□ -1.49
SF3B1-203ENST00000414174 CCDC102AQ96A19 550 aa5.74□□□□□ -1.49
SF3B1-203ENST00000414174 BCL11AQ9H165 835 aa5.74□□□□□ -1.49
SF3B1-203ENST00000414174 GPAT2Q6NUI2 795 aa5.73□□□□□ -1.49
SF3B1-203ENST00000414174 KLF16Q9BXK1 252 aaPredicted RBP5.73□□□□□ -1.49
SF3B1-203ENST00000414174 SOBPA7XYQ1 873 aa5.72□□□□□ -1.49
SF3B1-203ENST00000414174 TIMP2P16035 220 aa5.72□□□□□ -1.49
SF3B1-203ENST00000414174 VARSP26640 1264 aaKnown RBP5.72□□□□□ -1.49
SF3B1-203ENST00000414174 KANK3Q6NY19 840 aa5.72□□□□□ -1.49
SF3B1-203ENST00000414174 NUDT12Q9BQG2 462 aa5.72□□□□□ -1.49
SF3B1-203ENST00000414174 MINK1Q8N4C8 1332 aaPredicted RBP5.72□□□□□ -1.49
SF3B1-203ENST00000414174 MAN1A2O60476 641 aa5.71□□□□□ -1.5
SF3B1-203ENST00000414174 MDM2Q00987 491 aaPredicted RBP5.71□□□□□ -1.5
SF3B1-203ENST00000414174 NNTQ13423 1086 aa5.71□□□□□ -1.5
SF3B1-203ENST00000414174 KRTAP4-8Q9BYQ9 185 aa5.71□□□□□ -1.5
SF3B1-203ENST00000414174 ADH1CP00326 375 aa5.7□□□□□ -1.5
SF3B1-203ENST00000414174 WDR4P57081 412 aaKnown RBP5.7□□□□□ -1.5
SF3B1-203ENST00000414174 KRT76Q01546 638 aa5.7□□□□□ -1.5
SF3B1-203ENST00000414174 TRIM26Q12899 539 aaPredicted RBP5.7□□□□□ -1.5
SF3B1-203ENST00000414174 ZMYND10O75800 440 aa5.69□□□□□ -1.5
SF3B1-203ENST00000414174 BARGINQ6ZT62 677 aa5.69□□□□□ -1.5
SF3B1-203ENST00000414174 RETREG3Q86VR2 466 aa5.69□□□□□ -1.5
SF3B1-203ENST00000414174 GPR161Q8N6U8 529 aaKnown RBP5.69□□□□□ -1.5
SF3B1-203ENST00000414174 ZC3H15Q8WU90 426 aaKnown RBP5.69□□□□□ -1.5
SF3B1-203ENST00000414174 HLA-CQ95604 372 aa5.69□□□□□ -1.5
SF3B1-203ENST00000414174 HOXA2O43364 376 aa5.68□□□□□ -1.5
SF3B1-203ENST00000414174 ZNF385CQ66K41 422 aaPredicted RBP5.68□□□□□ -1.5
SF3B1-203ENST00000414174 NANOS1Q8WY41 292 aaKnown RBP5.68□□□□□ -1.5
SF3B1-203ENST00000414174 CNTNAP3BQ96NU0 1288 aa5.68□□□□□ -1.5
SF3B1-203ENST00000414174 CNTNAP3Q9BZ76 1288 aa5.68□□□□□ -1.5
SF3B1-203ENST00000414174 EVA1BQ9NVM1 165 aa5.68□□□□□ -1.5
SF3B1-203ENST00000414174 ARHGEF15O94989 841 aa5.67□□□□□ -1.5
SF3B1-203ENST00000414174 CCNYL3P0C7X3 344 aa5.67□□□□□ -1.5
SF3B1-203ENST00000414174 SLURP2P0DP57 97 aa5.67□□□□□ -1.5
SF3B1-203ENST00000414174 IRS1P35568 1242 aa5.67□□□□□ -1.5
SF3B1-203ENST00000414174 FAM217BQ9NTX9 383 aaPredicted RBP5.67□□□□□ -1.5
SF3B1-203ENST00000414174 TLL2Q9Y6L7 1015 aa5.67□□□□□ -1.5
SF3B1-203ENST00000414174 ADAM23O75077 832 aa5.66□□□□□ -1.5
SF3B1-203ENST00000414174 BAP1Q92560 729 aa5.66□□□□□ -1.5
SF3B1-203ENST00000414174 SCARF2Q96GP6 870 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-203ENST00000414174 CDK15Q96Q40 435 aa5.66□□□□□ -1.5
SF3B1-203ENST00000414174 UNC93B1Q9H1C4 597 aa5.66□□□□□ -1.5
SF3B1-203ENST00000414174 MS4A1P11836 297 aa5.65□□□□□ -1.5
SF3B1-203ENST00000414174 PDIA4P13667 645 aaKnown RBP5.65□□□□□ -1.5
SF3B1-203ENST00000414174 GUCA2AQ02747 115 aa5.65□□□□□ -1.5
SF3B1-203ENST00000414174 PTPRNQ16849 979 aa5.65□□□□□ -1.5
SF3B1-203ENST00000414174 SVOPQ8N4V2 548 aa5.65□□□□□ -1.5
SF3B1-203ENST00000414174 ZNF511Q8NB15 262 aa5.65□□□□□ -1.5
SF3B1-203ENST00000414174 SYMPKQ92797 1274 aaKnown RBP5.65□□□□□ -1.5
SF3B1-203ENST00000414174 COL25A1Q9BXS0 654 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-203ENST00000414174 GPCPD1Q9NPB8 672 aa5.65□□□□□ -1.5
SF3B1-203ENST00000414174 CDK11AQ9UQ88 783 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-203ENST00000414174 SOS2Q07890 1332 aaPredicted RBP5.65□□□□□ -1.51
SF3B1-203ENST00000414174 LOC105371045A0A1W2PR82 267 aa5.64□□□□□ -1.51
SF3B1-203ENST00000414174 MARSP56192 900 aaKnown RBP5.64□□□□□ -1.51
SF3B1-203ENST00000414174 KCNH2Q12809 1159 aa5.64□□□□□ -1.51
SF3B1-203ENST00000414174 FAM174AQ8TBP5 190 aa5.64□□□□□ -1.51
SF3B1-203ENST00000414174 UPP2O95045 317 aa5.63□□□□□ -1.51
SF3B1-203ENST00000414174 ZIC2O95409 532 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-203ENST00000414174 HRCP23327 699 aa5.63□□□□□ -1.51
SF3B1-203ENST00000414174 CLCN1P35523 988 aa5.63□□□□□ -1.51
SF3B1-203ENST00000414174 NR5A1Q13285 461 aa5.63□□□□□ -1.51
SF3B1-203ENST00000414174 AMHR2Q16671 573 aa5.63□□□□□ -1.51
SF3B1-203ENST00000414174 C6orf118Q5T5N4 469 aa5.63□□□□□ -1.51
SF3B1-203ENST00000414174 MSTNO14793 375 aa5.62□□□□□ -1.51
SF3B1-203ENST00000414174 SPTLC1O15269 473 aa5.62□□□□□ -1.51
SF3B1-203ENST00000414174 BMP2P12643 396 aa5.62□□□□□ -1.51
SF3B1-203ENST00000414174 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.62□□□□□ -1.517e-11■■□□□ 12.1
SF3B1-203ENST00000414174 UBE2Q2Q8WVN8 375 aa5.62□□□□□ -1.51
SF3B1-203ENST00000414174 ITPKCQ96DU7 683 aa5.62□□□□□ -1.51
SF3B1-203ENST00000414174 DNMT3LQ9UJW3 386 aa5.62□□□□□ -1.51
SF3B1-203ENST00000414174 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.61□□□□□ -1.51
SF3B1-203ENST00000414174 LINC01559Q495D7 138 aa5.61□□□□□ -1.51
SF3B1-203ENST00000414174 PARP9Q8IXQ6 854 aa5.61□□□□□ -1.51
SF3B1-203ENST00000414174 LINC00528Q8N1L1 170 aa5.61□□□□□ -1.51
SF3B1-203ENST00000414174 WHAMMQ8TF30 809 aa5.61□□□□□ -1.51
SF3B1-203ENST00000414174 ZFAND3Q9H8U3 227 aa5.61□□□□□ -1.51
SF3B1-203ENST00000414174 TRIM66O15016 1216 aa5.6□□□□□ -1.51
SF3B1-203ENST00000414174 RNFT1Q5M7Z0 435 aa5.6□□□□□ -1.51
SF3B1-203ENST00000414174 GIGYF2Q6Y7W6 1299 aaKnown RBP5.6□□□□□ -1.51
SF3B1-203ENST00000414174 KRI1Q8N9T8 703 aaKnown RBP5.6□□□□□ -1.51
SF3B1-203ENST00000414174 PSMG3-AS1Q96PY0 264 aa5.6□□□□□ -1.51
SF3B1-203ENST00000414174 KRTAP9-2Q9BYQ4 174 aa5.6□□□□□ -1.51
SF3B1-203ENST00000414174 PCDHGC3Q9UN70 934 aa5.6□□□□□ -1.51
SF3B1-203ENST00000414174 SUPT5HO00267 1087 aaKnown RBP5.59□□□□□ -1.51
SF3B1-203ENST00000414174 UBTFP17480 764 aaKnown RBP5.59□□□□□ -1.51
SF3B1-203ENST00000414174 SSTR3P32745 418 aaPredicted RBP5.59□□□□□ -1.51
SF3B1-203ENST00000414174 GRM5P41594 1212 aa5.59□□□□□ -1.51
SF3B1-203ENST00000414174 PTSQ03393 145 aa5.59□□□□□ -1.51
SF3B1-203ENST00000414174 DESI1Q6ICB0 168 aa5.59□□□□□ -1.51
SF3B1-203ENST00000414174 MEIOBQ8N635 442 aa5.59□□□□□ -1.51
SF3B1-203ENST00000414174 TSEN34Q9BSV6 310 aaKnown RBP5.59□□□□□ -1.51
SF3B1-203ENST00000414174 C6orf229H3BNL8 230 aa5.58□□□□□ -1.52
SF3B1-203ENST00000414174 HMGB1P09429 215 aaKnown RBP5.58□□□□□ -1.52
SF3B1-203ENST00000414174 PLA2G4EQ3MJ16 856 aa5.58□□□□□ -1.52
SF3B1-203ENST00000414174 NUTM1Q86Y26 1132 aa5.58□□□□□ -1.52
SF3B1-203ENST00000414174 FAM9AQ8IZU1 332 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-203ENST00000414174 SPIRE2Q8WWL2 714 aa5.58□□□□□ -1.52
SF3B1-203ENST00000414174 SPOCK3Q9BQ16 436 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms