RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 PPP2R1AP30153 589 aa9.01□□□□□ -0.97
VPS41-204ENST00000413141 SSH2Q76I76 1423 aa9.01□□□□□ -0.97
VPS41-204ENST00000413141 C14orf37Q86TY3 774 aa9.01□□□□□ -0.97
VPS41-204ENST00000413141 YTHDC1Q96MU7 727 aaKnown RBP9.01□□□□□ -0.97
VPS41-204ENST00000413141 ACEP12821 1306 aa9.01□□□□□ -0.97
VPS41-204ENST00000413141 USP54Q70EL1 1684 aa9□□□□□ -0.97
VPS41-204ENST00000413141 MST1RQ04912 1400 aa9□□□□□ -0.97
VPS41-204ENST00000413141 C1orf167Q5SNV9 1468 aa9□□□□□ -0.97
VPS41-204ENST00000413141 PIK3C2AO00443 1686 aa9□□□□□ -0.97
VPS41-204ENST00000413141 OVOS2A0A0J9YW53 1432 aa8.99□□□□□ -0.97
VPS41-204ENST00000413141 OVOS2Q6IE36 1432 aa8.99□□□□□ -0.97
VPS41-204ENST00000413141 FYB1O15117 783 aa8.99□□□□□ -0.97
VPS41-204ENST00000413141 NPM3O75607 178 aaKnown RBP8.99□□□□□ -0.97
VPS41-204ENST00000413141 MORC1Q86VD1 984 aa8.99□□□□□ -0.97
VPS41-204ENST00000413141 ZNF692Q9BU19 519 aaPredicted RBP8.99□□□□□ -0.97
VPS41-204ENST00000413141 C19orf44Q9H6X5 657 aa8.99□□□□□ -0.97
VPS41-204ENST00000413141 MSH6P52701 1360 aa8.99□□□□□ -0.97
VPS41-204ENST00000413141 SHPRHQ149N8 1683 aa8.98□□□□□ -0.97
VPS41-204ENST00000413141 MARF1Q9Y4F3 1742 aaKnown RBP8.98□□□□□ -0.97
VPS41-204ENST00000413141 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS41-204ENST00000413141 PMFBP1Q8TBY8 1022 aa8.98□□□□□ -0.97
VPS41-204ENST00000413141 GGNBP2Q9H3C7 697 aa8.98□□□□□ -0.97
VPS41-204ENST00000413141 SMG6Q86US8 1419 aaKnown RBP8.97□□□□□ -0.97
VPS41-204ENST00000413141 TRPM3Q9HCF6 1732 aaPredicted RBP8.97□□□□□ -0.97
VPS41-204ENST00000413141 NME9Q86XW9 330 aa8.97□□□□□ -0.97
VPS41-204ENST00000413141 NGDNQ8NEJ9 315 aaKnown RBP8.97□□□□□ -0.97
VPS41-204ENST00000413141 PHF8Q9UPP1 1060 aa8.97□□□□□ -0.97
VPS41-204ENST00000413141 TTC21BQ7Z4L5 1316 aa8.97□□□□□ -0.97
VPS41-204ENST00000413141 TTC21AQ8NDW8 1320 aa8.97□□□□□ -0.97
VPS41-204ENST00000413141 LTBP4Q8N2S1 1624 aa8.97□□□□□ -0.97
VPS41-204ENST00000413141 COL3A1P02461 1466 aaPredicted RBP8.96□□□□□ -0.97
VPS41-204ENST00000413141 FAM9BQ8IZU0 186 aa8.96□□□□□ -0.98
VPS41-204ENST00000413141 PNISRQ8TF01 805 aaKnown RBP8.96□□□□□ -0.98
VPS41-204ENST00000413141 BLMP54132 1417 aaPredicted RBP8.96□□□□□ -0.98
VPS41-204ENST00000413141 ATF3P18847 181 aa8.95□□□□□ -0.98
VPS41-204ENST00000413141 HOXD11P31277 338 aaPredicted RBP8.95□□□□□ -0.98
VPS41-204ENST00000413141 TNNT2P45379 298 aaPredicted RBP8.95□□□□□ -0.98
VPS41-204ENST00000413141 C1QBPQ07021 282 aaKnown RBP8.95□□□□□ -0.98
VPS41-204ENST00000413141 ESCO1Q5FWF5 840 aa8.95□□□□□ -0.98
VPS41-204ENST00000413141 CADPS2Q86UW7 1296 aa8.95□□□□□ -0.98
VPS41-204ENST00000413141 INSRP06213 1382 aa8.95□□□□□ -0.98
VPS41-204ENST00000413141 AATKQ6ZMQ8 1374 aa8.95□□□□□ -0.98
VPS41-204ENST00000413141 USP31Q70CQ4 1352 aa8.95□□□□□ -0.98
VPS41-204ENST00000413141 COG3Q96JB2 828 aa8.94□□□□□ -0.98
VPS41-204ENST00000413141 ORAI2Q96SN7 254 aa8.94□□□□□ -0.98
VPS41-204ENST00000413141 CDK12Q9NYV4 1490 aaPredicted RBP8.94□□□□□ -0.98
VPS41-204ENST00000413141 ALS2Q96Q42 1657 aa8.94□□□□□ -0.98
VPS41-204ENST00000413141 ZRANB1Q9UGI0 708 aa8.93□□□□□ -0.98
VPS41-204ENST00000413141 PEAK1Q9H792 1746 aa8.92□□□□□ -0.98
VPS41-204ENST00000413141 PXDNQ92626 1479 aa8.92□□□□□ -0.98
VPS41-204ENST00000413141 PNPLA6Q8IY17 1366 aa8.92□□□□□ -0.98
VPS41-204ENST00000413141 CENPBP07199 599 aaPredicted RBP8.92□□□□□ -0.98
VPS41-204ENST00000413141 MTHFSP49914 203 aa8.92□□□□□ -0.98
VPS41-204ENST00000413141 MAP2P11137 1827 aaKnown RBP8.91□□□□□ -0.98
VPS41-204ENST00000413141 NHSL1Q5SYE7 1610 aa8.91□□□□□ -0.98
VPS41-204ENST00000413141 SLIT3O75094 1523 aa8.91□□□□□ -0.98
VPS41-204ENST00000413141 NFAT5O94916 1531 aa8.91□□□□□ -0.98
VPS41-204ENST00000413141 HNRNPUQ00839 825 aaKnown RBP eCLIP8.91□□□□□ -0.98
VPS41-204ENST00000413141 WDR43Q15061 677 aaKnown RBP eCLIP8.91□□□□□ -0.98
VPS41-204ENST00000413141 CFAP53Q96M91 514 aa8.91□□□□□ -0.98
VPS41-204ENST00000413141 FOXO3O43524 673 aa8.9□□□□□ -0.98
VPS41-204ENST00000413141 PSME1Q06323 249 aa8.9□□□□□ -0.98
VPS41-204ENST00000413141 POLKQ9UBT6 870 aa8.9□□□□□ -0.98
VPS41-204ENST00000413141 CRYBG1Q9Y4K1 1723 aa8.9□□□□□ -0.98
VPS41-204ENST00000413141 PHRF1Q9P1Y6 1649 aaKnown RBP8.9□□□□□ -0.99
VPS41-204ENST00000413141 MED1Q15648 1581 aaPredicted RBP8.9□□□□□ -0.99
VPS41-204ENST00000413141 SBNO1A3KN83 1393 aa8.89□□□□□ -0.99
VPS41-204ENST00000413141 ZBED9Q6R2W3 1325 aa8.89□□□□□ -0.99
VPS41-204ENST00000413141 NPHP3Q7Z494 1330 aa8.89□□□□□ -0.99
VPS41-204ENST00000413141 PAK3O75914 559 aaPredicted RBP8.89□□□□□ -0.99
VPS41-204ENST00000413141 BRINP3Q76B58 766 aa8.89□□□□□ -0.99
VPS41-204ENST00000413141 EMILIN1Q9Y6C2 1016 aa8.89□□□□□ -0.99
VPS41-204ENST00000413141 IQSEC2Q5JU85 1478 aa8.89□□□□□ -0.99
VPS41-204ENST00000413141 LTN1O94822 1766 aa8.89□□□□□ -0.99
VPS41-204ENST00000413141 TNS3Q68CZ2 1445 aa8.88□□□□□ -0.99
VPS41-204ENST00000413141 FBLN1P23142 703 aa8.88□□□□□ -0.99
VPS41-204ENST00000413141 XPCQ01831 940 aaPredicted RBP8.88□□□□□ -0.99
VPS41-204ENST00000413141 RRS1Q15050 365 aaKnown RBP8.88□□□□□ -0.99
VPS41-204ENST00000413141 ABTB2Q8N961 1025 aa8.88□□□□□ -0.99
VPS41-204ENST00000413141 RNF216Q9NWF9 866 aaPredicted RBP8.88□□□□□ -0.99
VPS41-204ENST00000413141 SLAIN2Q9P270 581 aa8.88□□□□□ -0.99
VPS41-204ENST00000413141 ADAMTS8Q9UP79 889 aa8.88□□□□□ -0.99
VPS41-204ENST00000413141 ROBO1Q9Y6N7 1651 aa8.88□□□□□ -0.99
VPS41-204ENST00000413141 USP19O94966 1318 aa8.87□□□□□ -0.99
VPS41-204ENST00000413141 NLRP6P59044 892 aa8.87□□□□□ -0.99
VPS41-204ENST00000413141 NUTM2GQ5VZR2 741 aa8.87□□□□□ -0.99
VPS41-204ENST00000413141 KRT28Q7Z3Y7 464 aa8.87□□□□□ -0.99
VPS41-204ENST00000413141 RGPD1P0DJD0 1748 aa8.87□□□□□ -0.99
VPS41-204ENST00000413141 AHDC1Q5TGY3 1603 aaPredicted RBP8.87□□□□□ -0.99
VPS41-204ENST00000413141 RTL1A6NKG5 1358 aa8.86□□□□□ -0.99
VPS41-204ENST00000413141 FLT4P35916 1363 aa8.86□□□□□ -0.99
VPS41-204ENST00000413141 KIF24Q5T7B8 1368 aa8.86□□□□□ -0.99
VPS41-204ENST00000413141 MAP3K19Q56UN5 1328 aa8.86□□□□□ -0.99
VPS41-204ENST00000413141 ABCA3Q99758 1704 aa8.86□□□□□ -0.99
VPS41-204ENST00000413141 PPM1GO15355 546 aaPredicted RBP8.86□□□□□ -0.99
VPS41-204ENST00000413141 DDX17Q92841 729 aaKnown RBP8.86□□□□□ -0.99
VPS41-204ENST00000413141 ARHGEF10O15013 1369 aa8.86□□□□□ -0.99
VPS41-204ENST00000413141 SOX12O15370 315 aa8.85□□□□□ -0.99
VPS41-204ENST00000413141 DIAPH1O60610 1272 aaKnown RBP8.85□□□□□ -0.99
VPS41-204ENST00000413141 SOS2Q07890 1332 aaPredicted RBP8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms