RNA–Protein interactions for RNA: ENST00000409754.5

LIMS2-206, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 1 (best) BASIC

Gene LIMS2, Length 1,620 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-206ENST00000409754 CGNL1Q0VF96 1302 aa18.9■□□□□ 0.62
LIMS2-206ENST00000409754 NSD2O96028 1365 aa18.89■□□□□ 0.62
LIMS2-206ENST00000409754 HSPA1LP34931 641 aa18.89■□□□□ 0.61
LIMS2-206ENST00000409754 A0A1W2PP64 1363 aa18.88■□□□□ 0.61
LIMS2-206ENST00000409754 PXDNQ92626 1479 aa18.88■□□□□ 0.61
LIMS2-206ENST00000409754 TERF2IPQ9NYB0 399 aa18.87■□□□□ 0.61
LIMS2-206ENST00000409754 BLMP54132 1417 aaPredicted RBP18.86■□□□□ 0.61
LIMS2-206ENST00000409754 CD163L1Q9NR16 1453 aa18.86■□□□□ 0.61
LIMS2-206ENST00000409754 MORC1Q86VD1 984 aa18.85■□□□□ 0.61
LIMS2-206ENST00000409754 TRPM3Q9HCF6 1732 aaPredicted RBP18.85■□□□□ 0.61
LIMS2-206ENST00000409754 ESCO1Q5FWF5 840 aa18.84■□□□□ 0.61
LIMS2-206ENST00000409754 NUDT16Q96DE0 195 aaKnown RBP18.84■□□□□ 0.61
LIMS2-206ENST00000409754 HDGFL2Q7Z4V5 671 aaPredicted RBP18.83■□□□□ 0.61
LIMS2-206ENST00000409754 CABP1Q9NZU7 370 aa18.82■□□□□ 0.6
LIMS2-206ENST00000409754 POLR3AO14802 1390 aaPredicted RBP18.81■□□□□ 0.6
LIMS2-206ENST00000409754 AKAP12Q02952 1782 aa18.81■□□□□ 0.6
LIMS2-206ENST00000409754 WDR43Q15061 677 aaKnown RBP eCLIP18.81■□□□□ 0.6
LIMS2-206ENST00000409754 PPIP5K1Q6PFW1 1433 aa18.81■□□□□ 0.6
LIMS2-206ENST00000409754 PHF8Q9UPP1 1060 aa18.81■□□□□ 0.6
LIMS2-206ENST00000409754 SMG6Q86US8 1419 aaKnown RBP18.8■□□□□ 0.6
LIMS2-206ENST00000409754 SOS2Q07890 1332 aaPredicted RBP18.8■□□□□ 0.6
LIMS2-206ENST00000409754 PMFBP1Q8TBY8 1022 aa18.8■□□□□ 0.6
LIMS2-206ENST00000409754 FOXO3O43524 673 aa18.79■□□□□ 0.6
LIMS2-206ENST00000409754 XPCQ01831 940 aaPredicted RBP18.79■□□□□ 0.6
LIMS2-206ENST00000409754 ADAMTS8Q9UP79 889 aa18.79■□□□□ 0.6
LIMS2-206ENST00000409754 SHPRHQ149N8 1683 aa18.79■□□□□ 0.6
LIMS2-206ENST00000409754 ALS2Q96Q42 1657 aa18.78■□□□□ 0.6
LIMS2-206ENST00000409754 NRKQ7Z2Y5 1582 aa18.78■□□□□ 0.6
LIMS2-206ENST00000409754 SUPT16HQ9Y5B9 1047 aaKnown RBP18.78■□□□□ 0.6
LIMS2-206ENST00000409754 CCDC61Q9Y6R9 512 aa18.78■□□□□ 0.6
LIMS2-206ENST00000409754 NEFLP07196 543 aa18.77■□□□□ 0.6
LIMS2-206ENST00000409754 MON2Q7Z3U7 1717 aa18.77■□□□□ 0.59
LIMS2-206ENST00000409754 ANKRD26Q9UPS8 1709 aa18.76■□□□□ 0.59
LIMS2-206ENST00000409754 PLEKHG3A1L390 1219 aa18.76■□□□□ 0.59
LIMS2-206ENST00000409754 NUDCQ9Y266 331 aa18.76■□□□□ 0.59
LIMS2-206ENST00000409754 CPSF1Q10570 1443 aaKnown RBP18.76■□□□□ 0.59
LIMS2-206ENST00000409754 NPHP3Q7Z494 1330 aa18.75■□□□□ 0.59
LIMS2-206ENST00000409754 COL22A1Q8NFW1 1626 aaPredicted RBP18.75■□□□□ 0.59
LIMS2-206ENST00000409754 FYB1O15117 783 aa18.74■□□□□ 0.59
LIMS2-206ENST00000409754 PDE3BQ13370 1112 aa18.74■□□□□ 0.59
LIMS2-206ENST00000409754 CRYBG1Q9Y4K1 1723 aa18.74■□□□□ 0.59
LIMS2-206ENST00000409754 ACEP12821 1306 aa18.74■□□□□ 0.59
LIMS2-206ENST00000409754 ABCA3Q99758 1704 aa18.74■□□□□ 0.59
LIMS2-206ENST00000409754 SSH2Q76I76 1423 aa18.73■□□□□ 0.59
LIMS2-206ENST00000409754 TNNT2P45379 298 aaPredicted RBP18.73■□□□□ 0.59
LIMS2-206ENST00000409754 PNPLA6Q8IY17 1366 aa18.73■□□□□ 0.59
LIMS2-206ENST00000409754 EDC4Q6P2E9 1401 aaKnown RBP18.72■□□□□ 0.59
LIMS2-206ENST00000409754 GGNBP2Q9H3C7 697 aa18.72■□□□□ 0.59
LIMS2-206ENST00000409754 MARF1Q9Y4F3 1742 aaKnown RBP18.72■□□□□ 0.59
LIMS2-206ENST00000409754 KIF20BQ96Q89 1820 aa18.72■□□□□ 0.59
LIMS2-206ENST00000409754 LRP6O75581 1613 aa18.71■□□□□ 0.59
LIMS2-206ENST00000409754 FKBP8Q14318 412 aa18.71■□□□□ 0.59
LIMS2-206ENST00000409754 USP6P35125 1406 aa18.71■□□□□ 0.59
LIMS2-206ENST00000409754 TNS3Q68CZ2 1445 aa18.71■□□□□ 0.59
LIMS2-206ENST00000409754 SENP3-EIF4A1A0A087X0R7 540 aa18.71■□□□□ 0.58
LIMS2-206ENST00000409754 MTHFSP49914 203 aa18.71■□□□□ 0.58
LIMS2-206ENST00000409754 CFAP53Q96M91 514 aa18.71■□□□□ 0.58
LIMS2-206ENST00000409754 PIK3C2AO00443 1686 aa18.7■□□□□ 0.58
LIMS2-206ENST00000409754 KRT28Q7Z3Y7 464 aa18.7■□□□□ 0.58
LIMS2-206ENST00000409754 SPATA31A3Q5VYP0 1347 aa18.69■□□□□ 0.58
LIMS2-206ENST00000409754 SBNO1A3KN83 1393 aa18.69■□□□□ 0.58
LIMS2-206ENST00000409754 JCADQ9P266 1359 aa18.69■□□□□ 0.58
LIMS2-206ENST00000409754 ZNF692Q9BU19 519 aaPredicted RBP18.69■□□□□ 0.58
LIMS2-206ENST00000409754 MED1Q15648 1581 aaPredicted RBP18.67■□□□□ 0.58
LIMS2-206ENST00000409754 NGDNQ8NEJ9 315 aaKnown RBP18.67■□□□□ 0.58
LIMS2-206ENST00000409754 SALL2Q9Y467 1007 aaPredicted RBP18.67■□□□□ 0.58
LIMS2-206ENST00000409754 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.65■□□□□ 0.58
LIMS2-206ENST00000409754 NGEFQ8N5V2 710 aa18.65■□□□□ 0.58
LIMS2-206ENST00000409754 LRRC59Q96AG4 307 aaKnown RBP18.65■□□□□ 0.58
LIMS2-206ENST00000409754 PHRF1Q9P1Y6 1649 aaKnown RBP18.65■□□□□ 0.58
LIMS2-206ENST00000409754 PSME1Q06323 249 aa18.64■□□□□ 0.57
LIMS2-206ENST00000409754 USP54Q70EL1 1684 aa18.63■□□□□ 0.57
LIMS2-206ENST00000409754 CCDC146Q8IYE0 955 aa18.62■□□□□ 0.57
LIMS2-206ENST00000409754 ZNF521Q96K83 1311 aa18.62■□□□□ 0.57
LIMS2-206ENST00000409754 COL3A1P02461 1466 aaPredicted RBP18.62■□□□□ 0.57
LIMS2-206ENST00000409754 ERICH6BQ5W0A0 696 aa18.61■□□□□ 0.57
LIMS2-206ENST00000409754 RNF123Q5XPI4 1314 aa18.61■□□□□ 0.57
LIMS2-206ENST00000409754 APAF1O14727 1248 aa18.6■□□□□ 0.57
LIMS2-206ENST00000409754 NME9Q86XW9 330 aa18.6■□□□□ 0.57
LIMS2-206ENST00000409754 AATKQ6ZMQ8 1374 aa18.59■□□□□ 0.57
LIMS2-206ENST00000409754 TTC21BQ7Z4L5 1316 aa18.59■□□□□ 0.57
LIMS2-206ENST00000409754 CDCA7LQ96GN5 454 aa18.59■□□□□ 0.57
LIMS2-206ENST00000409754 ARHGEF10O15013 1369 aa18.58■□□□□ 0.57
LIMS2-206ENST00000409754 SPATA31A6Q5VVP1 1343 aa18.58■□□□□ 0.57
LIMS2-206ENST00000409754 CABLES1Q8TDN4 633 aa18.58■□□□□ 0.56
LIMS2-206ENST00000409754 RUNDC1Q96C34 613 aa18.58■□□□□ 0.56
LIMS2-206ENST00000409754 COG3Q96JB2 828 aa18.57■□□□□ 0.56
LIMS2-206ENST00000409754 SLIT3O75094 1523 aa18.57■□□□□ 0.56
LIMS2-206ENST00000409754 PAK3O75914 559 aaPredicted RBP18.56■□□□□ 0.56
LIMS2-206ENST00000409754 NUTM2GQ5VZR2 741 aa18.56■□□□□ 0.56
LIMS2-206ENST00000409754 ZRANB1Q9UGI0 708 aa18.56■□□□□ 0.56
LIMS2-206ENST00000409754 USP19O94966 1318 aa18.56■□□□□ 0.56
LIMS2-206ENST00000409754 GOLGA2Q08379 1002 aa18.56■□□□□ 0.56
LIMS2-206ENST00000409754 POLKQ9UBT6 870 aa18.56■□□□□ 0.56
LIMS2-206ENST00000409754 NCBP3Q53F19 620 aaKnown RBP18.55■□□□□ 0.56
LIMS2-206ENST00000409754 OVOS2A0A0J9YW53 1432 aa18.55■□□□□ 0.56
LIMS2-206ENST00000409754 OVOS2Q6IE36 1432 aa18.55■□□□□ 0.56
LIMS2-206ENST00000409754 U2AF1L5P0DN76 240 aaPredicted RBP18.54■□□□□ 0.56
LIMS2-206ENST00000409754 U2AF1Q01081 240 aaKnown RBP eCLIP18.54■□□□□ 0.56
LIMS2-206ENST00000409754 LMOD2Q6P5Q4 547 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms