RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 SLC4A2P04920 1241 aa20.82■□□□□ 0.92
NIF3L1-205ENST00000409588 ATRNO75882 1429 aa20.81■□□□□ 0.92
NIF3L1-205ENST00000409588 UPF1Q92900 1129 aaKnown RBP eCLIP20.8■□□□□ 0.92
NIF3L1-205ENST00000409588 GJD4Q96KN9 370 aaPredicted RBP20.8■□□□□ 0.92
NIF3L1-205ENST00000409588 MARF1Q9Y4F3 1742 aaKnown RBP20.79■□□□□ 0.92
NIF3L1-205ENST00000409588 SLIT2O94813 1529 aa20.78■□□□□ 0.92
NIF3L1-205ENST00000409588 ATP7BP35670 1465 aa20.77■□□□□ 0.92
NIF3L1-205ENST00000409588 POLR3AO14802 1390 aaPredicted RBP20.77■□□□□ 0.92
NIF3L1-205ENST00000409588 PAK3O75914 559 aaPredicted RBP20.77■□□□□ 0.92
NIF3L1-205ENST00000409588 NBPF8Q3BBV2 869 aa20.77■□□□□ 0.92
NIF3L1-205ENST00000409588 CABLES1Q8TDN4 633 aa20.77■□□□□ 0.92
NIF3L1-205ENST00000409588 ITSN1Q15811 1721 aa20.76■□□□□ 0.91
NIF3L1-205ENST00000409588 SRPK2P78362 688 aaKnown RBP20.76■□□□□ 0.91
NIF3L1-205ENST00000409588 BRD4O60885 1362 aaPredicted RBP20.75■□□□□ 0.91
NIF3L1-205ENST00000409588 RGS12O14924 1447 aa20.75■□□□□ 0.91
NIF3L1-205ENST00000409588 ACEP12821 1306 aa20.75■□□□□ 0.91
NIF3L1-205ENST00000409588 ROCK2O75116 1388 aaKnown RBP20.74■□□□□ 0.91
NIF3L1-205ENST00000409588 VPS72Q15906 364 aa20.74■□□□□ 0.91
NIF3L1-205ENST00000409588 EVC2Q86UK5 1308 aa20.74■□□□□ 0.91
NIF3L1-205ENST00000409588 FAM83GA6ND36 823 aa20.73■□□□□ 0.91
NIF3L1-205ENST00000409588 TRPM3Q9HCF6 1732 aaPredicted RBP20.73■□□□□ 0.91
NIF3L1-205ENST00000409588 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.72■□□□□ 0.91
NIF3L1-205ENST00000409588 ATAD2Q6PL18 1390 aa20.72■□□□□ 0.91
NIF3L1-205ENST00000409588 ONECUT3O60422 494 aaPredicted RBP20.71■□□□□ 0.91
NIF3L1-205ENST00000409588 CCDC125Q86Z20 511 aa20.71■□□□□ 0.91
NIF3L1-205ENST00000409588 TONSLQ96HA7 1378 aa20.71■□□□□ 0.91
NIF3L1-205ENST00000409588 ALS2Q96Q42 1657 aa20.7■□□□□ 0.9
NIF3L1-205ENST00000409588 TRPM1Q7Z4N2 1603 aa20.69■□□□□ 0.9
NIF3L1-205ENST00000409588 CABP2Q9NPB3 220 aa20.69■□□□□ 0.9
NIF3L1-205ENST00000409588 ABTB2Q8N961 1025 aa20.68■□□□□ 0.9
NIF3L1-205ENST00000409588 ZNF692Q9BU19 519 aaPredicted RBP20.68■□□□□ 0.9
NIF3L1-205ENST00000409588 PPIP5K1Q6PFW1 1433 aa20.68■□□□□ 0.9
NIF3L1-205ENST00000409588 NWD2Q9ULI1 1742 aa20.67■□□□□ 0.9
NIF3L1-205ENST00000409588 SLC24A1O60721 1099 aa20.67■□□□□ 0.9
NIF3L1-205ENST00000409588 PLEKHG5O94827 1062 aa20.67■□□□□ 0.9
NIF3L1-205ENST00000409588 NLRP13Q86W25 1043 aa20.67■□□□□ 0.9
NIF3L1-205ENST00000409588 BTG4Q9NY30 223 aa20.66■□□□□ 0.9
NIF3L1-205ENST00000409588 CABP1Q9NZU7 370 aa20.66■□□□□ 0.9
NIF3L1-205ENST00000409588 RALGAPBQ86X10 1494 aa20.66■□□□□ 0.9
NIF3L1-205ENST00000409588 CARD11Q9BXL7 1154 aa20.65■□□□□ 0.9
NIF3L1-205ENST00000409588 PRDM11Q9NQV5 511 aa20.65■□□□□ 0.9
NIF3L1-205ENST00000409588 TOPAZ1Q8N9V7 1692 aa20.64■□□□□ 0.9
NIF3L1-205ENST00000409588 SBNO2Q9Y2G9 1366 aa20.64■□□□□ 0.89
NIF3L1-205ENST00000409588 CCDC9Q9Y3X0 531 aaKnown RBP20.64■□□□□ 0.89
NIF3L1-205ENST00000409588 ABCA3Q99758 1704 aa20.63■□□□□ 0.89
NIF3L1-205ENST00000409588 QRICH2Q9H0J4 1663 aa20.63■□□□□ 0.89
NIF3L1-205ENST00000409588 COL14A1Q05707 1796 aaKnown RBP20.62■□□□□ 0.89
NIF3L1-205ENST00000409588 SEPT12Q8IYM1 358 aa20.61■□□□□ 0.89
NIF3L1-205ENST00000409588 PUS7Q96PZ0 661 aaKnown RBP20.61■□□□□ 0.89
NIF3L1-205ENST00000409588 TIMELESSQ9UNS1 1208 aa20.6■□□□□ 0.89
NIF3L1-205ENST00000409588 PLCH1Q4KWH8 1693 aa20.59■□□□□ 0.89
NIF3L1-205ENST00000409588 GLI3P10071 1580 aa20.59■□□□□ 0.89
NIF3L1-205ENST00000409588 USP19O94966 1318 aa20.58■□□□□ 0.89
NIF3L1-205ENST00000409588 GCP02774 474 aa20.58■□□□□ 0.89
NIF3L1-205ENST00000409588 NUTM2GQ5VZR2 741 aa20.58■□□□□ 0.89
NIF3L1-205ENST00000409588 CPDO75976 1380 aa20.58■□□□□ 0.88
NIF3L1-205ENST00000409588 KIAA0232Q92628 1395 aa20.58■□□□□ 0.88
NIF3L1-205ENST00000409588 USP6P35125 1406 aa20.57■□□□□ 0.88
NIF3L1-205ENST00000409588 ZC3H6P61129 1189 aaKnown RBP20.57■□□□□ 0.88
NIF3L1-205ENST00000409588 SPATA31A5Q5VU36 1347 aa20.56■□□□□ 0.88
NIF3L1-205ENST00000409588 SPATA31A7Q8IWB4 1347 aa20.56■□□□□ 0.88
NIF3L1-205ENST00000409588 CLSPNQ9HAW4 1339 aa20.56■□□□□ 0.88
NIF3L1-205ENST00000409588 EVA1CP58658 441 aa20.56■□□□□ 0.88
NIF3L1-205ENST00000409588 NLRP6P59044 892 aa20.56■□□□□ 0.88
NIF3L1-205ENST00000409588 KRT27Q7Z3Y8 459 aa20.56■□□□□ 0.88
NIF3L1-205ENST00000409588 CRYBG1Q9Y4K1 1723 aa20.56■□□□□ 0.88
NIF3L1-205ENST00000409588 TTC21AQ8NDW8 1320 aa20.54■□□□□ 0.88
NIF3L1-205ENST00000409588 SSH2Q76I76 1423 aa20.53■□□□□ 0.88
NIF3L1-205ENST00000409588 CHRNA2Q15822 529 aa20.52■□□□□ 0.88
NIF3L1-205ENST00000409588 FAM98CQ17RN3 349 aaKnown RBP20.52■□□□□ 0.88
NIF3L1-205ENST00000409588 KCNH5Q8NCM2 988 aa20.52■□□□□ 0.88
NIF3L1-205ENST00000409588 NRAPQ86VF7 1730 aa20.51■□□□□ 0.87
NIF3L1-205ENST00000409588 SF3B2Q13435 895 aaKnown RBP20.51■□□□□ 0.87
NIF3L1-205ENST00000409588 CPSF1Q10570 1443 aaKnown RBP20.51■□□□□ 0.87
NIF3L1-205ENST00000409588 SPATA31A1Q5TZJ5 1347 aa20.51■□□□□ 0.87
NIF3L1-205ENST00000409588 TTC21BQ7Z4L5 1316 aa20.51■□□□□ 0.87
NIF3L1-205ENST00000409588 A0A0G2JS52 829 aa20.5■□□□□ 0.87
NIF3L1-205ENST00000409588 MYT1Q01538 1121 aa20.5■□□□□ 0.87
NIF3L1-205ENST00000409588 POTEHQ6S545 545 aa20.5■□□□□ 0.87
NIF3L1-205ENST00000409588 THRAP3Q9Y2W1 955 aaKnown RBP20.5■□□□□ 0.87
NIF3L1-205ENST00000409588 BLMP54132 1417 aaPredicted RBP20.5■□□□□ 0.87
NIF3L1-205ENST00000409588 PHRF1Q9P1Y6 1649 aaKnown RBP20.49■□□□□ 0.87
NIF3L1-205ENST00000409588 EP400Q96L91 3159 aa20.49■□□□□ 0.87
NIF3L1-205ENST00000409588 BARGINQ6ZT62 677 aa20.49■□□□□ 0.87
NIF3L1-205ENST00000409588 STRN4Q9NRL3 753 aa20.49■□□□□ 0.87
NIF3L1-205ENST00000409588 KTN1Q86UP2 1357 aaKnown RBP20.48■□□□□ 0.87
NIF3L1-205ENST00000409588 HDGFL2Q7Z4V5 671 aaPredicted RBP20.48■□□□□ 0.87
NIF3L1-205ENST00000409588 TERF2IPQ9NYB0 399 aa20.48■□□□□ 0.87
NIF3L1-205ENST00000409588 AATKQ6ZMQ8 1374 aa20.47■□□□□ 0.87
NIF3L1-205ENST00000409588 ABCB7O75027 752 aa20.47■□□□□ 0.87
NIF3L1-205ENST00000409588 ST20-MTHFSA0A0A6YYL1 179 aa20.45■□□□□ 0.86
NIF3L1-205ENST00000409588 TCP11L2Q8N4U5 519 aa20.45■□□□□ 0.86
NIF3L1-205ENST00000409588 TMC1Q8TDI8 760 aa20.45■□□□□ 0.86
NIF3L1-205ENST00000409588 NRKQ7Z2Y5 1582 aa20.45■□□□□ 0.86
NIF3L1-205ENST00000409588 NINLQ9Y2I6 1382 aa20.45■□□□□ 0.86
NIF3L1-205ENST00000409588 C11orf95C9JLR9 678 aaPredicted RBP20.44■□□□□ 0.86
NIF3L1-205ENST00000409588 TESK2Q96S53 571 aa20.44■□□□□ 0.86
NIF3L1-205ENST00000409588 ZNF219Q9P2Y4 722 aaPredicted RBP20.44■□□□□ 0.86
NIF3L1-205ENST00000409588 ZRANB1Q9UGI0 708 aa20.44■□□□□ 0.86
NIF3L1-205ENST00000409588 SLIT3O75094 1523 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms