RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 PIK3C2AO00443 1686 aa28.17■■■□□ 2.1
VSX1-203ENST00000409285 PER1O15534 1290 aaPredicted RBP28.17■■■□□ 2.1
VSX1-203ENST00000409285 PHLPP1O60346 1717 aa28.16■■■□□ 2.1
VSX1-203ENST00000409285 CARD14Q9BXL6 1004 aa28.16■■■□□ 2.1
VSX1-203ENST00000409285 MARF1Q9Y4F3 1742 aaKnown RBP28.15■■■□□ 2.1
VSX1-203ENST00000409285 FOXO3O43524 673 aa28.14■■■□□ 2.09
VSX1-203ENST00000409285 COL16A1Q07092 1604 aaPredicted RBP28.13■■■□□ 2.09
VSX1-203ENST00000409285 NPC1L1Q9UHC9 1359 aa28.13■■■□□ 2.09
VSX1-203ENST00000409285 SOS2Q07890 1332 aaPredicted RBP28.11■■■□□ 2.09
VSX1-203ENST00000409285 SBNO1A3KN83 1393 aa28.1■■■□□ 2.09
VSX1-203ENST00000409285 TTC21AQ8NDW8 1320 aa28.1■■■□□ 2.09
VSX1-203ENST00000409285 NSD2O96028 1365 aa28.09■■■□□ 2.09
VSX1-203ENST00000409285 PSME1Q06323 249 aa28.09■■■□□ 2.09
VSX1-203ENST00000409285 HSPA1LP34931 641 aa28.08■■■□□ 2.09
VSX1-203ENST00000409285 KNSTRNQ9Y448 316 aa28.08■■■□□ 2.09
VSX1-203ENST00000409285 CGNL1Q0VF96 1302 aa28.08■■■□□ 2.09
VSX1-203ENST00000409285 TTC21BQ7Z4L5 1316 aa28.08■■■□□ 2.09
VSX1-203ENST00000409285 CRYBG1Q9Y4K1 1723 aa28.08■■■□□ 2.09
VSX1-203ENST00000409285 TNS3Q68CZ2 1445 aa28.06■■■□□ 2.08
VSX1-203ENST00000409285 AMER1Q5JTC6 1135 aaPredicted RBP28.06■■■□□ 2.08
VSX1-203ENST00000409285 KRT28Q7Z3Y7 464 aa28.06■■■□□ 2.08
VSX1-203ENST00000409285 MED1Q15648 1581 aaPredicted RBP28.05■■■□□ 2.08
VSX1-203ENST00000409285 COL22A1Q8NFW1 1626 aaPredicted RBP28.04■■■□□ 2.08
VSX1-203ENST00000409285 ABCA3Q99758 1704 aa28.03■■■□□ 2.08
VSX1-203ENST00000409285 DDX17Q92841 729 aaKnown RBP28.02■■■□□ 2.08
VSX1-203ENST00000409285 OVOS2A0A0J9YW53 1432 aa28.02■■■□□ 2.08
VSX1-203ENST00000409285 OVOS2Q6IE36 1432 aa28.02■■■□□ 2.08
VSX1-203ENST00000409285 USP31Q70CQ4 1352 aa28.01■■■□□ 2.08
VSX1-203ENST00000409285 PHRF1Q9P1Y6 1649 aaKnown RBP28■■■□□ 2.07
VSX1-203ENST00000409285 SHPRHQ149N8 1683 aa28■■■□□ 2.07
VSX1-203ENST00000409285 XPCQ01831 940 aaPredicted RBP28■■■□□ 2.07
VSX1-203ENST00000409285 ARHGEF10O15013 1369 aa27.99■■■□□ 2.07
VSX1-203ENST00000409285 SPATA31A3Q5VYP0 1347 aa27.99■■■□□ 2.07
VSX1-203ENST00000409285 FYB1O15117 783 aa27.99■■■□□ 2.07
VSX1-203ENST00000409285 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.99■■■□□ 2.07
VSX1-203ENST00000409285 SLIT3O75094 1523 aa27.97■■■□□ 2.07
VSX1-203ENST00000409285 MAP2P11137 1827 aaKnown RBP27.96■■■□□ 2.07
VSX1-203ENST00000409285 PAK3O75914 559 aaPredicted RBP27.95■■■□□ 2.07
VSX1-203ENST00000409285 DIEXFQ68CQ4 756 aaKnown RBP27.95■■■□□ 2.07
VSX1-203ENST00000409285 NME9Q86XW9 330 aa27.95■■■□□ 2.07
VSX1-203ENST00000409285 PARD3Q8TEW0 1356 aa27.94■■■□□ 2.06
VSX1-203ENST00000409285 ABTB2Q8N961 1025 aa27.94■■■□□ 2.06
VSX1-203ENST00000409285 LTN1O94822 1766 aa27.92■■■□□ 2.06
VSX1-203ENST00000409285 LRRC59Q96AG4 307 aaKnown RBP27.92■■■□□ 2.06
VSX1-203ENST00000409285 USP19O94966 1318 aa27.91■■■□□ 2.06
VSX1-203ENST00000409285 GGNBP2Q9H3C7 697 aa27.9■■■□□ 2.06
VSX1-203ENST00000409285 NFAT5O94916 1531 aa27.9■■■□□ 2.06
VSX1-203ENST00000409285 COG3Q96JB2 828 aa27.89■■■□□ 2.06
VSX1-203ENST00000409285 CC2D1BQ5T0F9 858 aaKnown RBP27.89■■■□□ 2.05
VSX1-203ENST00000409285 NLRP13Q86W25 1043 aa27.89■■■□□ 2.05
VSX1-203ENST00000409285 NLRP6P59044 892 aa27.87■■■□□ 2.05
VSX1-203ENST00000409285 RALBP1Q15311 655 aa27.87■■■□□ 2.05
VSX1-203ENST00000409285 PRKRIP1Q9H875 184 aaPredicted RBP27.87■■■□□ 2.05
VSX1-203ENST00000409285 PNPLA6Q8IY17 1366 aa27.86■■■□□ 2.05
VSX1-203ENST00000409285 ZRANB1Q9UGI0 708 aa27.86■■■□□ 2.05
VSX1-203ENST00000409285 AATKQ6ZMQ8 1374 aa27.85■■■□□ 2.05
VSX1-203ENST00000409285 ANP32CO43423 234 aa27.83■■■□□ 2.05
VSX1-203ENST00000409285 MORC1Q86VD1 984 aa27.83■■■□□ 2.05
VSX1-203ENST00000409285 LMOD2Q6P5Q4 547 aa27.83■■■□□ 2.04
VSX1-203ENST00000409285 JCADQ9P266 1359 aa27.81■■■□□ 2.04
VSX1-203ENST00000409285 SMG6Q86US8 1419 aaKnown RBP27.81■■■□□ 2.04
VSX1-203ENST00000409285 NUTM2GQ5VZR2 741 aa27.81■■■□□ 2.04
VSX1-203ENST00000409285 ABCC6O95255 1503 aa27.8■■■□□ 2.04
VSX1-203ENST00000409285 KCNH5Q8NCM2 988 aa27.8■■■□□ 2.04
VSX1-203ENST00000409285 PEAK1Q9H792 1746 aa27.78■■■□□ 2.04
VSX1-203ENST00000409285 COL18A1P39060 1754 aa27.76■■■□□ 2.03
VSX1-203ENST00000409285 MYBBP1AQ9BQG0 1328 aaKnown RBP27.76■■■□□ 2.03
VSX1-203ENST00000409285 KIF24Q5T7B8 1368 aa27.75■■■□□ 2.03
VSX1-203ENST00000409285 GCP02774 474 aa27.75■■■□□ 2.03
VSX1-203ENST00000409285 CPDO75976 1380 aa27.74■■■□□ 2.03
VSX1-203ENST00000409285 RGPD5Q99666 1765 aa27.74■■■□□ 2.03
VSX1-203ENST00000409285 CDK12Q9NYV4 1490 aaPredicted RBP27.74■■■□□ 2.03
VSX1-203ENST00000409285 CNGB1Q14028 1251 aaPredicted RBP27.73■■■□□ 2.03
VSX1-203ENST00000409285 PPP2R1AP30153 589 aa27.72■■■□□ 2.03
VSX1-203ENST00000409285 LMO7Q8WWI1 1683 aa27.72■■■□□ 2.03
VSX1-203ENST00000409285 COL14A1Q05707 1796 aaKnown RBP27.71■■■□□ 2.03
VSX1-203ENST00000409285 RTL1A6NKG5 1358 aa27.71■■■□□ 2.03
VSX1-203ENST00000409285 SPATA31A6Q5VVP1 1343 aa27.7■■■□□ 2.02
VSX1-203ENST00000409285 TNNT2P45379 298 aaPredicted RBP27.7■■■□□ 2.02
VSX1-203ENST00000409285 CABLES1Q8TDN4 633 aa27.7■■■□□ 2.02
VSX1-203ENST00000409285 POLKQ9UBT6 870 aa27.68■■■□□ 2.02
VSX1-203ENST00000409285 PLCH1Q4KWH8 1693 aa27.67■■■□□ 2.02
VSX1-203ENST00000409285 ARHGEF25Q86VW2 580 aa27.67■■■□□ 2.02
VSX1-203ENST00000409285 FAM208AQ9UK61 1670 aaKnown RBP27.67■■■□□ 2.02
VSX1-203ENST00000409285 MAP3K19Q56UN5 1328 aa27.67■■■□□ 2.02
VSX1-203ENST00000409285 NWD2Q9ULI1 1742 aa27.66■■■□□ 2.02
VSX1-203ENST00000409285 INSRP06213 1382 aa27.66■■■□□ 2.02
VSX1-203ENST00000409285 COL3A1P02461 1466 aaPredicted RBP27.65■■■□□ 2.02
VSX1-203ENST00000409285 FLT4P35916 1363 aa27.65■■■□□ 2.02
VSX1-203ENST00000409285 SOX12O15370 315 aa27.64■■■□□ 2.02
VSX1-203ENST00000409285 FBLN1P23142 703 aa27.64■■■□□ 2.02
VSX1-203ENST00000409285 RRS1Q15050 365 aaKnown RBP27.64■■■□□ 2.02
VSX1-203ENST00000409285 KIAA0232Q92628 1395 aa27.64■■■□□ 2.01
VSX1-203ENST00000409285 MTHFSP49914 203 aa27.63■■■□□ 2.01
VSX1-203ENST00000409285 BLMP54132 1417 aaPredicted RBP27.63■■■□□ 2.01
VSX1-203ENST00000409285 HAP1P54257 671 aaPredicted RBP27.63■■■□□ 2.01
VSX1-203ENST00000409285 EMILIN1Q9Y6C2 1016 aa27.63■■■□□ 2.01
VSX1-203ENST00000409285 LRP6O75581 1613 aa27.62■■■□□ 2.01
VSX1-203ENST00000409285 MIER1Q8N108 512 aa27.62■■■□□ 2.01
VSX1-203ENST00000409285 NRAPQ86VF7 1730 aa27.61■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms