RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 DDX17Q92841 729 aaKnown RBP16.88■□□□□ 0.29
LINC00339-201ENST00000404210 TTC21AQ8NDW8 1320 aa16.88■□□□□ 0.29
LINC00339-201ENST00000404210 SCAF1Q9H7N4 1312 aaKnown RBP16.88■□□□□ 0.29
LINC00339-201ENST00000404210 NHSL1Q5SYE7 1610 aa16.87■□□□□ 0.29
LINC00339-201ENST00000404210 SBNO1A3KN83 1393 aa16.87■□□□□ 0.29
LINC00339-201ENST00000404210 NSD3Q9BZ95 1437 aa16.87■□□□□ 0.29
LINC00339-201ENST00000404210 CGNL1Q0VF96 1302 aa16.86■□□□□ 0.29
LINC00339-201ENST00000404210 FYB1O15117 783 aa16.85■□□□□ 0.29
LINC00339-201ENST00000404210 PAK3O75914 559 aaPredicted RBP16.85■□□□□ 0.29
LINC00339-201ENST00000404210 XPCQ01831 940 aaPredicted RBP16.85■□□□□ 0.29
LINC00339-201ENST00000404210 AMER1Q5JTC6 1135 aaPredicted RBP16.85■□□□□ 0.29
LINC00339-201ENST00000404210 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.85■□□□□ 0.29
LINC00339-201ENST00000404210 PXDNQ92626 1479 aa16.85■□□□□ 0.29
LINC00339-201ENST00000404210 AHDC1Q5TGY3 1603 aaPredicted RBP16.85■□□□□ 0.29
LINC00339-201ENST00000404210 LRRC59Q96AG4 307 aaKnown RBP16.84■□□□□ 0.29
LINC00339-201ENST00000404210 NPC1L1Q9UHC9 1359 aa16.84■□□□□ 0.29
LINC00339-201ENST00000404210 SPATA31A3Q5VYP0 1347 aa16.83■□□□□ 0.28
LINC00339-201ENST00000404210 NRKQ7Z2Y5 1582 aa16.83■□□□□ 0.28
LINC00339-201ENST00000404210 ABTB2Q8N961 1025 aa16.83■□□□□ 0.28
LINC00339-201ENST00000404210 TRPM3Q9HCF6 1732 aaPredicted RBP16.83■□□□□ 0.28
LINC00339-201ENST00000404210 USP31Q70CQ4 1352 aa16.81■□□□□ 0.28
LINC00339-201ENST00000404210 NLRP13Q86W25 1043 aa16.81■□□□□ 0.28
LINC00339-201ENST00000404210 NME9Q86XW9 330 aa16.81■□□□□ 0.28
LINC00339-201ENST00000404210 NSD2O96028 1365 aa16.8■□□□□ 0.28
LINC00339-201ENST00000404210 PHLPP1O60346 1717 aa16.8■□□□□ 0.28
LINC00339-201ENST00000404210 NLRP6P59044 892 aa16.8■□□□□ 0.28
LINC00339-201ENST00000404210 DIEXFQ68CQ4 756 aaKnown RBP16.8■□□□□ 0.28
LINC00339-201ENST00000404210 GGNBP2Q9H3C7 697 aa16.8■□□□□ 0.28
LINC00339-201ENST00000404210 TNS3Q68CZ2 1445 aa16.79■□□□□ 0.28
LINC00339-201ENST00000404210 CC2D1BQ5T0F9 858 aaKnown RBP16.79■□□□□ 0.28
LINC00339-201ENST00000404210 LMOD2Q6P5Q4 547 aa16.79■□□□□ 0.28
LINC00339-201ENST00000404210 COG3Q96JB2 828 aa16.79■□□□□ 0.28
LINC00339-201ENST00000404210 ALS2Q96Q42 1657 aa16.78■□□□□ 0.28
LINC00339-201ENST00000404210 ARHGEF10O15013 1369 aa16.78■□□□□ 0.28
LINC00339-201ENST00000404210 KIF20BQ96Q89 1820 aa16.78■□□□□ 0.28
LINC00339-201ENST00000404210 FBXO41Q8TF61 875 aa16.78■□□□□ 0.28
LINC00339-201ENST00000404210 ZRANB1Q9UGI0 708 aa16.78■□□□□ 0.28
LINC00339-201ENST00000404210 RALBP1Q15311 655 aa16.76■□□□□ 0.27
LINC00339-201ENST00000404210 NUTM2GQ5VZR2 741 aa16.76■□□□□ 0.27
LINC00339-201ENST00000404210 MORC1Q86VD1 984 aa16.76■□□□□ 0.27
LINC00339-201ENST00000404210 COL16A1Q07092 1604 aaPredicted RBP16.76■□□□□ 0.27
LINC00339-201ENST00000404210 PIK3C2AO00443 1686 aa16.75■□□□□ 0.27
LINC00339-201ENST00000404210 ANP32CO43423 234 aa16.75■□□□□ 0.27
LINC00339-201ENST00000404210 ANKRD26Q9UPS8 1709 aa16.74■□□□□ 0.27
LINC00339-201ENST00000404210 OVOS2A0A0J9YW53 1432 aa16.74■□□□□ 0.27
LINC00339-201ENST00000404210 OVOS2Q6IE36 1432 aa16.74■□□□□ 0.27
LINC00339-201ENST00000404210 HSPA1LP34931 641 aa16.74■□□□□ 0.27
LINC00339-201ENST00000404210 KCNH5Q8NCM2 988 aa16.74■□□□□ 0.27
LINC00339-201ENST00000404210 USP54Q70EL1 1684 aa16.74■□□□□ 0.27
LINC00339-201ENST00000404210 CNGB1Q14028 1251 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-201ENST00000404210 PRKRIP1Q9H875 184 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-201ENST00000404210 USP19O94966 1318 aa16.72■□□□□ 0.27
LINC00339-201ENST00000404210 PNPLA6Q8IY17 1366 aa16.72■□□□□ 0.27
LINC00339-201ENST00000404210 PARD3Q8TEW0 1356 aa16.72■□□□□ 0.27
LINC00339-201ENST00000404210 GCP02774 474 aa16.71■□□□□ 0.27
LINC00339-201ENST00000404210 JCADQ9P266 1359 aa16.71■□□□□ 0.27
LINC00339-201ENST00000404210 MARF1Q9Y4F3 1742 aaKnown RBP16.7■□□□□ 0.26
LINC00339-201ENST00000404210 AATKQ6ZMQ8 1374 aa16.7■□□□□ 0.26
LINC00339-201ENST00000404210 CABLES1Q8TDN4 633 aa16.69■□□□□ 0.26
LINC00339-201ENST00000404210 COL22A1Q8NFW1 1626 aaPredicted RBP16.69■□□□□ 0.26
LINC00339-201ENST00000404210 SLIT3O75094 1523 aa16.69■□□□□ 0.26
LINC00339-201ENST00000404210 MED1Q15648 1581 aaPredicted RBP16.68■□□□□ 0.26
LINC00339-201ENST00000404210 PPP2R1AP30153 589 aa16.67■□□□□ 0.26
LINC00339-201ENST00000404210 TNNT2P45379 298 aaPredicted RBP16.67■□□□□ 0.26
LINC00339-201ENST00000404210 MAP2P11137 1827 aaKnown RBP16.67■□□□□ 0.26
LINC00339-201ENST00000404210 SHPRHQ149N8 1683 aa16.66■□□□□ 0.26
LINC00339-201ENST00000404210 FBLN1P23142 703 aa16.66■□□□□ 0.26
LINC00339-201ENST00000404210 POLKQ9UBT6 870 aa16.66■□□□□ 0.26
LINC00339-201ENST00000404210 CRYBG1Q9Y4K1 1723 aa16.66■□□□□ 0.26
LINC00339-201ENST00000404210 MYBBP1AQ9BQG0 1328 aaKnown RBP16.66■□□□□ 0.26
LINC00339-201ENST00000404210 PLEKHG5O94827 1062 aa16.65■□□□□ 0.26
LINC00339-201ENST00000404210 HAP1P54257 671 aaPredicted RBP16.65■□□□□ 0.26
LINC00339-201ENST00000404210 ARHGEF25Q86VW2 580 aa16.65■□□□□ 0.26
LINC00339-201ENST00000404210 SPATA31A6Q5VVP1 1343 aa16.65■□□□□ 0.26
LINC00339-201ENST00000404210 PHRF1Q9P1Y6 1649 aaKnown RBP16.64■□□□□ 0.25
LINC00339-201ENST00000404210 SOX12O15370 315 aa16.64■□□□□ 0.25
LINC00339-201ENST00000404210 MTHFSP49914 203 aa16.63■□□□□ 0.25
LINC00339-201ENST00000404210 ZC3H6P61129 1189 aaKnown RBP16.63■□□□□ 0.25
LINC00339-201ENST00000404210 RRS1Q15050 365 aaKnown RBP16.63■□□□□ 0.25
LINC00339-201ENST00000404210 NFAT5O94916 1531 aa16.63■□□□□ 0.25
LINC00339-201ENST00000404210 CPDO75976 1380 aa16.63■□□□□ 0.25
LINC00339-201ENST00000404210 MAP3K19Q56UN5 1328 aa16.62■□□□□ 0.25
LINC00339-201ENST00000404210 KIF24Q5T7B8 1368 aa16.62■□□□□ 0.25
LINC00339-201ENST00000404210 AMPHP49418 695 aa16.61■□□□□ 0.25
LINC00339-201ENST00000404210 MIER1Q8N108 512 aa16.61■□□□□ 0.25
LINC00339-201ENST00000404210 EMILIN1Q9Y6C2 1016 aa16.61■□□□□ 0.25
LINC00339-201ENST00000404210 ABCA3Q99758 1704 aa16.61■□□□□ 0.25
LINC00339-201ENST00000404210 NUTM2BA6NNL0 878 aaPredicted RBP16.6■□□□□ 0.25
LINC00339-201ENST00000404210 NUTM2EB1AL46 878 aaPredicted RBP16.6■□□□□ 0.25
LINC00339-201ENST00000404210 NUTM2AQ8IVF1 878 aaPredicted RBP16.6■□□□□ 0.25
LINC00339-201ENST00000404210 IP6K1Q92551 441 aa16.6■□□□□ 0.25
LINC00339-201ENST00000404210 INSRP06213 1382 aa16.59■□□□□ 0.25
LINC00339-201ENST00000404210 KIAA0232Q92628 1395 aa16.59■□□□□ 0.25
LINC00339-201ENST00000404210 SMG6Q86US8 1419 aaKnown RBP16.59■□□□□ 0.25
LINC00339-201ENST00000404210 LTN1O94822 1766 aa16.59■□□□□ 0.25
LINC00339-201ENST00000404210 FAM83GA6ND36 823 aa16.58■□□□□ 0.24
LINC00339-201ENST00000404210 CCER2I3L3R5 266 aa16.58■□□□□ 0.24
LINC00339-201ENST00000404210 PPM1GO15355 546 aaPredicted RBP16.58■□□□□ 0.24
LINC00339-201ENST00000404210 HOXC9P31274 260 aa16.58■□□□□ 0.24
LINC00339-201ENST00000404210 CFAP53Q96M91 514 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms