RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 PAK3O75914 559 aaPredicted RBP22.02■■□□□ 1.12
HMGA1-204ENST00000401473 SPATA31A3Q5VYP0 1347 aa22.01■■□□□ 1.11
HMGA1-204ENST00000401473 MON2Q7Z3U7 1717 aa22■■□□□ 1.11
HMGA1-204ENST00000401473 DDX10Q13206 875 aaKnown RBP22■■□□□ 1.11
HMGA1-204ENST00000401473 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22■■□□□ 1.11
HMGA1-204ENST00000401473 TRPM3Q9HCF6 1732 aaPredicted RBP21.99■■□□□ 1.11
HMGA1-204ENST00000401473 TTC21BQ7Z4L5 1316 aa21.99■■□□□ 1.11
HMGA1-204ENST00000401473 PER1O15534 1290 aaPredicted RBP21.99■■□□□ 1.11
HMGA1-204ENST00000401473 SBNO1A3KN83 1393 aa21.99■■□□□ 1.11
HMGA1-204ENST00000401473 JCADQ9P266 1359 aa21.99■■□□□ 1.11
HMGA1-204ENST00000401473 PNPLA6Q8IY17 1366 aa21.98■■□□□ 1.11
HMGA1-204ENST00000401473 TNS3Q68CZ2 1445 aa21.96■■□□□ 1.11
HMGA1-204ENST00000401473 EDC4Q6P2E9 1401 aaKnown RBP21.96■■□□□ 1.11
HMGA1-204ENST00000401473 LMOD2Q6P5Q4 547 aa21.96■■□□□ 1.11
HMGA1-204ENST00000401473 ABTB2Q8N961 1025 aa21.96■■□□□ 1.11
HMGA1-204ENST00000401473 NRKQ7Z2Y5 1582 aa21.95■■□□□ 1.1
HMGA1-204ENST00000401473 NSD3Q9BZ95 1437 aa21.95■■□□□ 1.1
HMGA1-204ENST00000401473 NUTM2GQ5VZR2 741 aa21.95■■□□□ 1.1
HMGA1-204ENST00000401473 ZRANB1Q9UGI0 708 aa21.95■■□□□ 1.1
HMGA1-204ENST00000401473 BRD4O60885 1362 aaPredicted RBP21.95■■□□□ 1.1
HMGA1-204ENST00000401473 NME9Q86XW9 330 aa21.94■■□□□ 1.1
HMGA1-204ENST00000401473 FYB1O15117 783 aa21.94■■□□□ 1.1
HMGA1-204ENST00000401473 ALS2Q96Q42 1657 aa21.93■■□□□ 1.1
HMGA1-204ENST00000401473 TTC21AQ8NDW8 1320 aa21.93■■□□□ 1.1
HMGA1-204ENST00000401473 CABLES1Q8TDN4 633 aa21.92■■□□□ 1.1
HMGA1-204ENST00000401473 SHPRHQ149N8 1683 aa21.91■■□□□ 1.1
HMGA1-204ENST00000401473 PLEKHG5O94827 1062 aa21.91■■□□□ 1.1
HMGA1-204ENST00000401473 NLRP6P59044 892 aa21.9■■□□□ 1.1
HMGA1-204ENST00000401473 KNSTRNQ9Y448 316 aa21.9■■□□□ 1.1
HMGA1-204ENST00000401473 PIK3C2AO00443 1686 aa21.9■■□□□ 1.1
HMGA1-204ENST00000401473 ARHGEF10O15013 1369 aa21.9■■□□□ 1.1
HMGA1-204ENST00000401473 GGNBP2Q9H3C7 697 aa21.9■■□□□ 1.1
HMGA1-204ENST00000401473 AMER1Q5JTC6 1135 aaPredicted RBP21.89■■□□□ 1.09
HMGA1-204ENST00000401473 NUTM2BA6NNL0 878 aaPredicted RBP21.88■■□□□ 1.09
HMGA1-204ENST00000401473 NUTM2EB1AL46 878 aaPredicted RBP21.88■■□□□ 1.09
HMGA1-204ENST00000401473 NUTM2AQ8IVF1 878 aaPredicted RBP21.88■■□□□ 1.09
HMGA1-204ENST00000401473 SPATA31A6Q5VVP1 1343 aa21.88■■□□□ 1.09
HMGA1-204ENST00000401473 CGNL1Q0VF96 1302 aa21.87■■□□□ 1.09
HMGA1-204ENST00000401473 LRP6O75581 1613 aa21.87■■□□□ 1.09
HMGA1-204ENST00000401473 COL22A1Q8NFW1 1626 aaPredicted RBP21.87■■□□□ 1.09
HMGA1-204ENST00000401473 NLRP13Q86W25 1043 aa21.87■■□□□ 1.09
HMGA1-204ENST00000401473 USP31Q70CQ4 1352 aa21.85■■□□□ 1.09
HMGA1-204ENST00000401473 MARF1Q9Y4F3 1742 aaKnown RBP21.84■■□□□ 1.09
HMGA1-204ENST00000401473 MED1Q15648 1581 aaPredicted RBP21.84■■□□□ 1.09
HMGA1-204ENST00000401473 CNGB1Q14028 1251 aaPredicted RBP21.83■■□□□ 1.09
HMGA1-204ENST00000401473 FBLN1P23142 703 aa21.83■■□□□ 1.08
HMGA1-204ENST00000401473 OVOS2A0A0J9YW53 1432 aa21.82■■□□□ 1.08
HMGA1-204ENST00000401473 OVOS2Q6IE36 1432 aa21.82■■□□□ 1.08
HMGA1-204ENST00000401473 USP19O94966 1318 aa21.82■■□□□ 1.08
HMGA1-204ENST00000401473 ADAMTS2O95450 1211 aa21.82■■□□□ 1.08
HMGA1-204ENST00000401473 GCP02774 474 aa21.82■■□□□ 1.08
HMGA1-204ENST00000401473 CC2D1BQ5T0F9 858 aaKnown RBP21.82■■□□□ 1.08
HMGA1-204ENST00000401473 KIF20BQ96Q89 1820 aa21.82■■□□□ 1.08
HMGA1-204ENST00000401473 COG3Q96JB2 828 aa21.81■■□□□ 1.08
HMGA1-204ENST00000401473 CRYBG1Q9Y4K1 1723 aa21.8■■□□□ 1.08
HMGA1-204ENST00000401473 SOX12O15370 315 aa21.79■■□□□ 1.08
HMGA1-204ENST00000401473 USP54Q70EL1 1684 aa21.78■■□□□ 1.08
HMGA1-204ENST00000401473 HAP1P54257 671 aaPredicted RBP21.77■■□□□ 1.08
HMGA1-204ENST00000401473 NPC1L1Q9UHC9 1359 aa21.77■■□□□ 1.08
HMGA1-204ENST00000401473 ABCA3Q99758 1704 aa21.77■■□□□ 1.08
HMGA1-204ENST00000401473 ZC3H6P61129 1189 aaKnown RBP21.77■■□□□ 1.08
HMGA1-204ENST00000401473 SLIT3O75094 1523 aa21.76■■□□□ 1.07
HMGA1-204ENST00000401473 NSD2O96028 1365 aa21.75■■□□□ 1.07
HMGA1-204ENST00000401473 TNNT2P45379 298 aaPredicted RBP21.75■■□□□ 1.07
HMGA1-204ENST00000401473 PHRF1Q9P1Y6 1649 aaKnown RBP21.75■■□□□ 1.07
HMGA1-204ENST00000401473 MORC1Q86VD1 984 aa21.75■■□□□ 1.07
HMGA1-204ENST00000401473 KCNH5Q8NCM2 988 aa21.75■■□□□ 1.07
HMGA1-204ENST00000401473 FAM83GA6ND36 823 aa21.74■■□□□ 1.07
HMGA1-204ENST00000401473 MEX3CQ5U5Q3 659 aaKnown RBP21.74■■□□□ 1.07
HMGA1-204ENST00000401473 C8orf37Q96NL8 207 aa21.74■■□□□ 1.07
HMGA1-204ENST00000401473 ANKRD26Q9UPS8 1709 aa21.73■■□□□ 1.07
HMGA1-204ENST00000401473 NFAT5O94916 1531 aa21.72■■□□□ 1.07
HMGA1-204ENST00000401473 KIAA0232Q92628 1395 aa21.72■■□□□ 1.07
HMGA1-204ENST00000401473 RRS1Q15050 365 aaKnown RBP21.71■■□□□ 1.07
HMGA1-204ENST00000401473 ARHGEF25Q86VW2 580 aa21.71■■□□□ 1.07
HMGA1-204ENST00000401473 MAP2P11137 1827 aaKnown RBP21.71■■□□□ 1.07
HMGA1-204ENST00000401473 NGLY1Q96IV0 654 aa21.71■■□□□ 1.07
HMGA1-204ENST00000401473 CHRNA2Q15822 529 aa21.7■■□□□ 1.06
HMGA1-204ENST00000401473 RGS17Q9UGC6 210 aaPredicted RBP21.7■■□□□ 1.06
HMGA1-204ENST00000401473 PRDM11Q9NQV5 511 aa21.69■■□□□ 1.06
HMGA1-204ENST00000401473 POLKQ9UBT6 870 aa21.69■■□□□ 1.06
HMGA1-204ENST00000401473 FNBP4Q8N3X1 1017 aaPredicted RBP21.68■■□□□ 1.06
HMGA1-204ENST00000401473 MAP3K19Q56UN5 1328 aa21.68■■□□□ 1.06
HMGA1-204ENST00000401473 CPDO75976 1380 aa21.68■■□□□ 1.06
HMGA1-204ENST00000401473 AFF2P51816 1311 aa21.67■■□□□ 1.06
HMGA1-204ENST00000401473 ZBTB7CA1YPR0 619 aa21.67■■□□□ 1.06
HMGA1-204ENST00000401473 AXIN2Q9Y2T1 843 aa21.67■■□□□ 1.06
HMGA1-204ENST00000401473 EMILIN1Q9Y6C2 1016 aa21.67■■□□□ 1.06
HMGA1-204ENST00000401473 AATKQ6ZMQ8 1374 aa21.67■■□□□ 1.06
HMGA1-204ENST00000401473 PARD3Q8TEW0 1356 aa21.66■■□□□ 1.06
HMGA1-204ENST00000401473 PRKRIP1Q9H875 184 aaPredicted RBP21.66■■□□□ 1.06
HMGA1-204ENST00000401473 LTN1O94822 1766 aa21.65■■□□□ 1.06
HMGA1-204ENST00000401473 BCL9LQ86UU0 1499 aa21.64■■□□□ 1.06
HMGA1-204ENST00000401473 SLIT2O94813 1529 aa21.64■■□□□ 1.05
HMGA1-204ENST00000401473 PPM1GO15355 546 aaPredicted RBP21.63■■□□□ 1.05
HMGA1-204ENST00000401473 PHF23Q9BUL5 403 aaPredicted RBP21.63■■□□□ 1.05
HMGA1-204ENST00000401473 BTG4Q9NY30 223 aa21.63■■□□□ 1.05
HMGA1-204ENST00000401473 COL18A1P39060 1754 aa21.63■■□□□ 1.05
HMGA1-204ENST00000401473 PPP2R1AP30153 589 aa21.62■■□□□ 1.05
HMGA1-204ENST00000401473 MTHFSP49914 203 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms