RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 KIAA1210Q9ULL0 1709 aa13.33□□□□□ -0.28
VPS53-203ENST00000401468 C1orf167Q5SNV9 1468 aa13.32□□□□□ -0.28
VPS53-203ENST00000401468 XPCQ01831 940 aaPredicted RBP13.32□□□□□ -0.28
VPS53-203ENST00000401468 SIN3AQ96ST3 1273 aa13.32□□□□□ -0.28
VPS53-203ENST00000401468 BMP2KQ9NSY1 1161 aaPredicted RBP13.32□□□□□ -0.28
VPS53-203ENST00000401468 LAMC1P11047 1609 aa13.31□□□□□ -0.28
VPS53-203ENST00000401468 DCCP43146 1447 aa13.31□□□□□ -0.28
VPS53-203ENST00000401468 PTCH1Q13635 1447 aa13.31□□□□□ -0.28
VPS53-203ENST00000401468 CCER1Q8TC90 406 aaPredicted RBP13.31□□□□□ -0.28
VPS53-203ENST00000401468 C7P10643 843 aa13.3□□□□□ -0.28
VPS53-203ENST00000401468 TIE1P35590 1138 aa13.3□□□□□ -0.28
VPS53-203ENST00000401468 SAFB2Q14151 953 aaKnown RBP eCLIP13.3□□□□□ -0.28
VPS53-203ENST00000401468 STAC3Q96MF2 364 aa13.3□□□□□ -0.28
VPS53-203ENST00000401468 SGIP1Q9BQI5 828 aa13.3□□□□□ -0.28
VPS53-203ENST00000401468 TIMELESSQ9UNS1 1208 aa13.3□□□□□ -0.28
VPS53-203ENST00000401468 CDC42BPGQ6DT37 1551 aa13.29□□□□□ -0.28
VPS53-203ENST00000401468 PIK3C2GO75747 1445 aa13.29□□□□□ -0.28
VPS53-203ENST00000401468 POTEB2H3BUK9 544 aa13.28□□□□□ -0.28
VPS53-203ENST00000401468 KDM2AQ9Y2K7 1162 aa13.28□□□□□ -0.28
VPS53-203ENST00000401468 TRPM1Q7Z4N2 1603 aa13.28□□□□□ -0.28
VPS53-203ENST00000401468 CFAP70Q5T0N1 1121 aa13.27□□□□□ -0.29
VPS53-203ENST00000401468 ADAMTS2O95450 1211 aa13.26□□□□□ -0.29
VPS53-203ENST00000401468 PNPLA6Q8IY17 1366 aa13.26□□□□□ -0.29
VPS53-203ENST00000401468 ARHGEF28Q8N1W1 1705 aaKnown RBP13.26□□□□□ -0.29
VPS53-203ENST00000401468 USP32Q8NFA0 1604 aa13.26□□□□□ -0.29
VPS53-203ENST00000401468 L3MBTL2Q969R5 705 aa13.26□□□□□ -0.29
VPS53-203ENST00000401468 PRAG1Q86YV5 1406 aa13.25□□□□□ -0.29
VPS53-203ENST00000401468 YTHDC2Q9H6S0 1430 aaKnown RBP13.25□□□□□ -0.29
VPS53-203ENST00000401468 ESCO1Q5FWF5 840 aa13.25□□□□□ -0.29
VPS53-203ENST00000401468 IFNL1Q8IU54 200 aa13.25□□□□□ -0.29
VPS53-203ENST00000401468 C8orf37Q96NL8 207 aa13.25□□□□□ -0.29
VPS53-203ENST00000401468 ABCA3Q99758 1704 aa13.25□□□□□ -0.29
VPS53-203ENST00000401468 TONSLQ96HA7 1378 aa13.24□□□□□ -0.29
VPS53-203ENST00000401468 AFF2P51816 1311 aa13.24□□□□□ -0.29
VPS53-203ENST00000401468 SPATA31A6Q5VVP1 1343 aa13.24□□□□□ -0.29
VPS53-203ENST00000401468 TTLL13PA6NNM8 815 aa13.24□□□□□ -0.29
VPS53-203ENST00000401468 NEUROD1Q13562 356 aa13.24□□□□□ -0.29
VPS53-203ENST00000401468 LRPPRCP42704 1394 aaKnown RBP13.23□□□□□ -0.29
VPS53-203ENST00000401468 PYGBP11216 843 aa13.23□□□□□ -0.29
VPS53-203ENST00000401468 COL22A1Q8NFW1 1626 aaPredicted RBP13.23□□□□□ -0.29
VPS53-203ENST00000401468 KIF1AQ12756 1690 aa13.22□□□□□ -0.29
VPS53-203ENST00000401468 ADGRB1O14514 1584 aa13.22□□□□□ -0.29
VPS53-203ENST00000401468 BRWD3Q6RI45 1802 aa13.22□□□□□ -0.29
VPS53-203ENST00000401468 PXDNQ92626 1479 aa13.22□□□□□ -0.29
VPS53-203ENST00000401468 FOXO3O43524 673 aa13.21□□□□□ -0.29
VPS53-203ENST00000401468 DCAF11Q8TEB1 546 aa13.21□□□□□ -0.29
VPS53-203ENST00000401468 LRRC59Q96AG4 307 aaKnown RBP13.21□□□□□ -0.29
VPS53-203ENST00000401468 OTUD5Q96G74 571 aa13.21□□□□□ -0.29
VPS53-203ENST00000401468 HIRIP3Q9BW71 556 aaPredicted RBP13.21□□□□□ -0.29
VPS53-203ENST00000401468 TECPR2O15040 1411 aa13.21□□□□□ -0.3
VPS53-203ENST00000401468 PLCH1Q4KWH8 1693 aa13.19□□□□□ -0.3
VPS53-203ENST00000401468 RALGAPBQ86X10 1494 aa13.19□□□□□ -0.3
VPS53-203ENST00000401468 PRAM1Q96QH2 718 aa13.19□□□□□ -0.3
VPS53-203ENST00000401468 TRAK1Q9UPV9 953 aa13.19□□□□□ -0.3
VPS53-203ENST00000401468 GSE1Q14687 1217 aa13.18□□□□□ -0.3
VPS53-203ENST00000401468 C14orf93Q9H972 538 aaKnown RBP13.18□□□□□ -0.3
VPS53-203ENST00000401468 ABCC11Q96J66 1382 aa13.18□□□□□ -0.3
VPS53-203ENST00000401468 CDK12Q9NYV4 1490 aaPredicted RBP13.17□□□□□ -0.3
VPS53-203ENST00000401468 SOS2Q07890 1332 aaPredicted RBP13.17□□□□□ -0.3
VPS53-203ENST00000401468 MINK1Q8N4C8 1332 aaPredicted RBP13.17□□□□□ -0.3
VPS53-203ENST00000401468 TRPM3Q9HCF6 1732 aaPredicted RBP13.17□□□□□ -0.3
VPS53-203ENST00000401468 NGLY1Q96IV0 654 aa13.17□□□□□ -0.3
VPS53-203ENST00000401468 TRIM35Q9UPQ4 493 aa13.17□□□□□ -0.3
VPS53-203ENST00000401468 GPRASP1Q5JY77 1395 aa13.17□□□□□ -0.3
VPS53-203ENST00000401468 ITSN1Q15811 1721 aa13.16□□□□□ -0.3
VPS53-203ENST00000401468 ZNF772Q68DY9 489 aaPredicted RBP13.16□□□□□ -0.3
VPS53-203ENST00000401468 RGS12O14924 1447 aa13.15□□□□□ -0.3
VPS53-203ENST00000401468 RXRBP28702 533 aa13.15□□□□□ -0.3
VPS53-203ENST00000401468 NBPF8Q3BBV2 869 aa13.15□□□□□ -0.3
VPS53-203ENST00000401468 IFNLR1Q8IU57 520 aaPredicted RBP13.15□□□□□ -0.3
VPS53-203ENST00000401468 PMFBP1Q8TBY8 1022 aa13.15□□□□□ -0.3
VPS53-203ENST00000401468 TMEM106CQ9BVX2 250 aa13.15□□□□□ -0.3
VPS53-203ENST00000401468 POGKQ9P215 609 aa13.15□□□□□ -0.3
VPS53-203ENST00000401468 DLC1Q96QB1 1528 aa13.14□□□□□ -0.31
VPS53-203ENST00000401468 LMOD2Q6P5Q4 547 aa13.14□□□□□ -0.31
VPS53-203ENST00000401468 CABLES1Q8TDN4 633 aa13.14□□□□□ -0.31
VPS53-203ENST00000401468 QTRT2Q9H974 415 aaKnown RBP13.14□□□□□ -0.31
VPS53-203ENST00000401468 ADGRB2O60241 1585 aa13.14□□□□□ -0.31
VPS53-203ENST00000401468 QRICH2Q9H0J4 1663 aa13.14□□□□□ -0.31
VPS53-203ENST00000401468 NPHP3Q7Z494 1330 aa13.13□□□□□ -0.31
VPS53-203ENST00000401468 ALS2Q96Q42 1657 aa13.13□□□□□ -0.31
VPS53-203ENST00000401468 SEC24BO95487 1268 aa13.13□□□□□ -0.31
VPS53-203ENST00000401468 EP400Q96L91 3159 aa13.13□□□□□ -0.31
VPS53-203ENST00000401468 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.13□□□□□ -0.31
VPS53-203ENST00000401468 CRYBG1Q9Y4K1 1723 aa13.13□□□□□ -0.31
VPS53-203ENST00000401468 SPOCK2Q92563 424 aa13.12□□□□□ -0.31
VPS53-203ENST00000401468 PCDHB8Q9UN66 801 aa13.12□□□□□ -0.31
VPS53-203ENST00000401468 KRT28Q7Z3Y7 464 aa13.11□□□□□ -0.31
VPS53-203ENST00000401468 USP21Q9UK80 565 aa13.11□□□□□ -0.31
VPS53-203ENST00000401468 PHF8Q9UPP1 1060 aa13.11□□□□□ -0.31
VPS53-203ENST00000401468 TOPAZ1Q8N9V7 1692 aa13.1□□□□□ -0.31
VPS53-203ENST00000401468 POTEFA5A3E0 1075 aa13.1□□□□□ -0.31
VPS53-203ENST00000401468 POTEJP0CG39 1038 aa13.1□□□□□ -0.31
VPS53-203ENST00000401468 MAMSTRQ6ZN01 415 aa13.1□□□□□ -0.31
VPS53-203ENST00000401468 PRR36Q9H6K5 1346 aa13.1□□□□□ -0.31
VPS53-203ENST00000401468 GLI3P10071 1580 aa13.09□□□□□ -0.31
VPS53-203ENST00000401468 IER5LQ5T953 404 aa13.09□□□□□ -0.31
VPS53-203ENST00000401468 NRAPQ86VF7 1730 aa13.08□□□□□ -0.32
VPS53-203ENST00000401468 TNS3Q68CZ2 1445 aa13.08□□□□□ -0.32
VPS53-203ENST00000401468 NBPF1Q3BBV0 1214 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms