RNA–Protein interactions for RNA: ENST00000400540.5

LINC00544-201, long intergenic non-protein coding RNA 544, humanhuman

TSL 5 BASIC

Gene LINC00544, Length 1,031 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00544-201ENST00000400540 ATP7BP35670 1465 aa17.57■□□□□ 0.4
LINC00544-201ENST00000400540 KRT27Q7Z3Y8 459 aa17.57■□□□□ 0.4
LINC00544-201ENST00000400540 DCAF11Q8TEB1 546 aa17.57■□□□□ 0.4
LINC00544-201ENST00000400540 LRP5O75197 1615 aa17.57■□□□□ 0.4
LINC00544-201ENST00000400540 EIF3AQ14152 1382 aaKnown RBP17.56■□□□□ 0.4
LINC00544-201ENST00000400540 GPRASP1Q5JY77 1395 aa17.56■□□□□ 0.4
LINC00544-201ENST00000400540 BTG4Q9NY30 223 aa17.56■□□□□ 0.4
LINC00544-201ENST00000400540 A0A0G2JS52 829 aa17.55■□□□□ 0.4
LINC00544-201ENST00000400540 WASLO00401 505 aaPredicted RBP17.55■□□□□ 0.4
LINC00544-201ENST00000400540 MYT1Q01538 1121 aa17.55■□□□□ 0.4
LINC00544-201ENST00000400540 FAM98CQ17RN3 349 aaKnown RBP17.55■□□□□ 0.4
LINC00544-201ENST00000400540 SF3B2Q13435 895 aaKnown RBP17.54■□□□□ 0.4
LINC00544-201ENST00000400540 KIAA1210Q9ULL0 1709 aa17.54■□□□□ 0.4
LINC00544-201ENST00000400540 PAK3O75914 559 aaPredicted RBP17.51■□□□□ 0.39
LINC00544-201ENST00000400540 FAM182BQ5T319 152 aa17.51■□□□□ 0.39
LINC00544-201ENST00000400540 NGDNQ8NEJ9 315 aaKnown RBP17.51■□□□□ 0.39
LINC00544-201ENST00000400540 NRKQ7Z2Y5 1582 aa17.5■□□□□ 0.39
LINC00544-201ENST00000400540 SPATA31A5Q5VU36 1347 aa17.49■□□□□ 0.39
LINC00544-201ENST00000400540 SPATA31A7Q8IWB4 1347 aa17.49■□□□□ 0.39
LINC00544-201ENST00000400540 KIAA0232Q92628 1395 aa17.48■□□□□ 0.39
LINC00544-201ENST00000400540 PSDA5PKW4 1024 aaPredicted RBP17.47■□□□□ 0.39
LINC00544-201ENST00000400540 NUDT16Q96DE0 195 aaKnown RBP17.47■□□□□ 0.39
LINC00544-201ENST00000400540 PRDM11Q9NQV5 511 aa17.47■□□□□ 0.39
LINC00544-201ENST00000400540 LMO7Q8WWI1 1683 aa17.46■□□□□ 0.39
LINC00544-201ENST00000400540 QRICH2Q9H0J4 1663 aa17.46■□□□□ 0.39
LINC00544-201ENST00000400540 BAG6P46379 1132 aa17.46■□□□□ 0.39
LINC00544-201ENST00000400540 CHRNA2Q15822 529 aa17.45■□□□□ 0.38
LINC00544-201ENST00000400540 NUTM2GQ5VZR2 741 aa17.45■□□□□ 0.38
LINC00544-201ENST00000400540 EN1Q05925 392 aaPredicted RBP17.44■□□□□ 0.38
LINC00544-201ENST00000400540 CDK19Q9BWU1 502 aa17.44■□□□□ 0.38
LINC00544-201ENST00000400540 RREB1Q92766 1687 aa17.44■□□□□ 0.38
LINC00544-201ENST00000400540 POLR3AO14802 1390 aaPredicted RBP17.43■□□□□ 0.38
LINC00544-201ENST00000400540 STAC3Q96MF2 364 aa17.43■□□□□ 0.38
LINC00544-201ENST00000400540 NUP188Q5SRE5 1749 aa17.43■□□□□ 0.38
LINC00544-201ENST00000400540 SPATA31A1Q5TZJ5 1347 aa17.43■□□□□ 0.38
LINC00544-201ENST00000400540 DISP2A7MBM2 1401 aa17.42■□□□□ 0.38
LINC00544-201ENST00000400540 ZC3H6P61129 1189 aaKnown RBP17.42■□□□□ 0.38
LINC00544-201ENST00000400540 STRN4Q9NRL3 753 aa17.42■□□□□ 0.38
LINC00544-201ENST00000400540 ACEP12821 1306 aa17.42■□□□□ 0.38
LINC00544-201ENST00000400540 CAMTA1Q9Y6Y1 1673 aa17.42■□□□□ 0.38
LINC00544-201ENST00000400540 HRCP23327 699 aa17.4■□□□□ 0.38
LINC00544-201ENST00000400540 PARP4Q9UKK3 1724 aaKnown RBP17.4■□□□□ 0.38
LINC00544-201ENST00000400540 WNK3Q9BYP7 1800 aa17.4■□□□□ 0.38
LINC00544-201ENST00000400540 SSH2Q76I76 1423 aa17.39■□□□□ 0.38
LINC00544-201ENST00000400540 NBPF1Q3BBV0 1214 aa17.38■□□□□ 0.37
LINC00544-201ENST00000400540 NBPF8Q3BBV2 869 aa17.38■□□□□ 0.37
LINC00544-201ENST00000400540 USP35Q9P2H5 1018 aa17.38■□□□□ 0.37
LINC00544-201ENST00000400540 EZH2Q15910 746 aaKnown RBP17.37■□□□□ 0.37
LINC00544-201ENST00000400540 PPIP5K1Q6PFW1 1433 aa17.37■□□□□ 0.37
LINC00544-201ENST00000400540 PIK3C2AO00443 1686 aa17.36■□□□□ 0.37
LINC00544-201ENST00000400540 RGPD5Q99666 1765 aa17.36■□□□□ 0.37
LINC00544-201ENST00000400540 SBF2Q86WG5 1849 aa17.36■□□□□ 0.37
LINC00544-201ENST00000400540 PLEKHG3A1L390 1219 aa17.36■□□□□ 0.37
LINC00544-201ENST00000400540 TRIM37O94972 964 aa17.36■□□□□ 0.37
LINC00544-201ENST00000400540 R3HDM1Q15032 1099 aaKnown RBP17.36■□□□□ 0.37
LINC00544-201ENST00000400540 CCDC61Q9Y6R9 512 aa17.36■□□□□ 0.37
LINC00544-201ENST00000400540 USP19O94966 1318 aa17.35■□□□□ 0.37
LINC00544-201ENST00000400540 TRPM1Q7Z4N2 1603 aa17.35■□□□□ 0.37
LINC00544-201ENST00000400540 LRRC37A3O60309 1634 aa17.34■□□□□ 0.37
LINC00544-201ENST00000400540 CPDO75976 1380 aa17.34■□□□□ 0.37
LINC00544-201ENST00000400540 COL18A1P39060 1754 aa17.34■□□□□ 0.37
LINC00544-201ENST00000400540 AKAP12Q02952 1782 aa17.34■□□□□ 0.37
LINC00544-201ENST00000400540 LARP1Q6PKG0 1096 aaKnown RBP17.34■□□□□ 0.37
LINC00544-201ENST00000400540 ABTB2Q8N961 1025 aa17.34■□□□□ 0.37
LINC00544-201ENST00000400540 PEAK1Q9H792 1746 aa17.34■□□□□ 0.37
LINC00544-201ENST00000400540 COL5A2P05997 1499 aaPredicted RBP17.33■□□□□ 0.37
LINC00544-201ENST00000400540 FAM196AQ6ZSG2 479 aa17.33■□□□□ 0.36
LINC00544-201ENST00000400540 CAMKK2Q96RR4 588 aa17.33■□□□□ 0.36
LINC00544-201ENST00000400540 SLIT3O75094 1523 aa17.32■□□□□ 0.36
LINC00544-201ENST00000400540 EVA1CP58658 441 aa17.32■□□□□ 0.36
LINC00544-201ENST00000400540 SRPK2P78362 688 aaKnown RBP17.32■□□□□ 0.36
LINC00544-201ENST00000400540 CABP2Q9NPB3 220 aa17.32■□□□□ 0.36
LINC00544-201ENST00000400540 CENPJQ9HC77 1338 aaPredicted RBP17.31■□□□□ 0.36
LINC00544-201ENST00000400540 BARGINQ6ZT62 677 aa17.31■□□□□ 0.36
LINC00544-201ENST00000400540 APBA3O96018 575 aa17.3■□□□□ 0.36
LINC00544-201ENST00000400540 RGPD3A6NKT7 1758 aaPredicted RBP17.3■□□□□ 0.36
LINC00544-201ENST00000400540 RGPD4Q7Z3J3 1758 aa17.3■□□□□ 0.36
LINC00544-201ENST00000400540 PDE3BQ13370 1112 aa17.29■□□□□ 0.36
LINC00544-201ENST00000400540 USP6P35125 1406 aa17.29■□□□□ 0.36
LINC00544-201ENST00000400540 GCP02774 474 aa17.28■□□□□ 0.36
LINC00544-201ENST00000400540 TCP11L2Q8N4U5 519 aa17.28■□□□□ 0.36
LINC00544-201ENST00000400540 PARD3Q8TEW0 1356 aa17.28■□□□□ 0.36
LINC00544-201ENST00000400540 ZBTB7CA1YPR0 619 aa17.27■□□□□ 0.36
LINC00544-201ENST00000400540 NLRP13Q86W25 1043 aa17.27■□□□□ 0.36
LINC00544-201ENST00000400540 CRB1P82279 1406 aa17.26■□□□□ 0.35
LINC00544-201ENST00000400540 CABP1Q9NZU7 370 aa17.25■□□□□ 0.35
LINC00544-201ENST00000400540 MON2Q7Z3U7 1717 aa17.24■□□□□ 0.35
LINC00544-201ENST00000400540 THRAP3Q9Y2W1 955 aaKnown RBP17.24■□□□□ 0.35
LINC00544-201ENST00000400540 BRD4O60885 1362 aaPredicted RBP17.24■□□□□ 0.35
LINC00544-201ENST00000400540 OVOS2A0A0G2JMS6 1433 aa17.22■□□□□ 0.35
LINC00544-201ENST00000400540 OVOS2A0A0J9YW53 1432 aa17.22■□□□□ 0.35
LINC00544-201ENST00000400540 OVOS2Q6IE36 1432 aa17.22■□□□□ 0.35
LINC00544-201ENST00000400540 NLRP6P59044 892 aa17.22■□□□□ 0.35
LINC00544-201ENST00000400540 AATKQ6ZMQ8 1374 aa17.22■□□□□ 0.35
LINC00544-201ENST00000400540 CASZ1Q86V15 1759 aa17.22■□□□□ 0.35
LINC00544-201ENST00000400540 LTN1O94822 1766 aa17.21■□□□□ 0.35
LINC00544-201ENST00000400540 L3MBTL2Q969R5 705 aa17.21■□□□□ 0.35
LINC00544-201ENST00000400540 CPSF1Q10570 1443 aaKnown RBP17.21■□□□□ 0.34
LINC00544-201ENST00000400540 NFAT5O94916 1531 aa17.2■□□□□ 0.34
LINC00544-201ENST00000400540 AXIN2Q9Y2T1 843 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms