RNA–Protein interactions for RNA: ENST00000397760.8

PDLIM2-204, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-204ENST00000397760 AKAP12Q02952 1782 aa25.98■■□□□ 1.75
PDLIM2-204ENST00000397760 TNNT2P45379 298 aaPredicted RBP25.98■■□□□ 1.75
PDLIM2-204ENST00000397760 CADPS2Q86UW7 1296 aa25.98■■□□□ 1.75
PDLIM2-204ENST00000397760 TTC21BQ7Z4L5 1316 aa25.97■■□□□ 1.75
PDLIM2-204ENST00000397760 MON2Q7Z3U7 1717 aa25.97■■□□□ 1.75
PDLIM2-204ENST00000397760 AEBP2Q6ZN18 517 aaPredicted RBP25.96■■□□□ 1.75
PDLIM2-204ENST00000397760 NME9Q86XW9 330 aa25.96■■□□□ 1.75
PDLIM2-204ENST00000397760 ORAI2Q96SN7 254 aa25.95■■□□□ 1.75
PDLIM2-204ENST00000397760 C1orf167Q5SNV9 1468 aa25.95■■□□□ 1.74
PDLIM2-204ENST00000397760 FAM9BQ8IZU0 186 aa25.94■■□□□ 1.74
PDLIM2-204ENST00000397760 SSH2Q76I76 1423 aa25.93■■□□□ 1.74
PDLIM2-204ENST00000397760 MST1RQ04912 1400 aa25.92■■□□□ 1.74
PDLIM2-204ENST00000397760 PNISRQ8TF01 805 aaKnown RBP25.92■■□□□ 1.74
PDLIM2-204ENST00000397760 NEFLP07196 543 aa25.91■■□□□ 1.74
PDLIM2-204ENST00000397760 ZRANB1Q9UGI0 708 aa25.91■■□□□ 1.74
PDLIM2-204ENST00000397760 TTC21AQ8NDW8 1320 aa25.91■■□□□ 1.74
PDLIM2-204ENST00000397760 XIRP1Q702N8 1843 aaKnown RBP25.9■■□□□ 1.74
PDLIM2-204ENST00000397760 COG3Q96JB2 828 aa25.9■■□□□ 1.74
PDLIM2-204ENST00000397760 KIF20BQ96Q89 1820 aa25.89■■□□□ 1.74
PDLIM2-204ENST00000397760 NRKQ7Z2Y5 1582 aa25.89■■□□□ 1.74
PDLIM2-204ENST00000397760 PSME1Q06323 249 aa25.88■■□□□ 1.73
PDLIM2-204ENST00000397760 FOXO3O43524 673 aa25.86■■□□□ 1.73
PDLIM2-204ENST00000397760 ANKRD26Q9UPS8 1709 aa25.86■■□□□ 1.73
PDLIM2-204ENST00000397760 MTHFSP49914 203 aa25.85■■□□□ 1.73
PDLIM2-204ENST00000397760 FKBP8Q14318 412 aa25.85■■□□□ 1.73
PDLIM2-204ENST00000397760 PAK3O75914 559 aaPredicted RBP25.84■■□□□ 1.73
PDLIM2-204ENST00000397760 SLAIN2Q9P270 581 aa25.81■■□□□ 1.72
PDLIM2-204ENST00000397760 OVOS2A0A0J9YW53 1432 aa25.8■■□□□ 1.72
PDLIM2-204ENST00000397760 OVOS2Q6IE36 1432 aa25.8■■□□□ 1.72
PDLIM2-204ENST00000397760 KIF1AQ12756 1690 aa25.8■■□□□ 1.72
PDLIM2-204ENST00000397760 USP31Q70CQ4 1352 aa25.8■■□□□ 1.72
PDLIM2-204ENST00000397760 FBLN1P23142 703 aa25.79■■□□□ 1.72
PDLIM2-204ENST00000397760 XPCQ01831 940 aaPredicted RBP25.79■■□□□ 1.72
PDLIM2-204ENST00000397760 KRT28Q7Z3Y7 464 aa25.79■■□□□ 1.72
PDLIM2-204ENST00000397760 ABTB2Q8N961 1025 aa25.79■■□□□ 1.72
PDLIM2-204ENST00000397760 LTBP4Q8N2S1 1624 aa25.79■■□□□ 1.72
PDLIM2-204ENST00000397760 NLRP6P59044 892 aa25.79■■□□□ 1.72
PDLIM2-204ENST00000397760 CFAP53Q96M91 514 aa25.79■■□□□ 1.72
PDLIM2-204ENST00000397760 AATKQ6ZMQ8 1374 aa25.77■■□□□ 1.72
PDLIM2-204ENST00000397760 WDR43Q15061 677 aaKnown RBP eCLIP25.77■■□□□ 1.72
PDLIM2-204ENST00000397760 TSHZ2Q9NRE2 1034 aa25.77■■□□□ 1.72
PDLIM2-204ENST00000397760 POLKQ9UBT6 870 aa25.77■■□□□ 1.72
PDLIM2-204ENST00000397760 BRINP3Q76B58 766 aa25.76■■□□□ 1.71
PDLIM2-204ENST00000397760 HNRNPUQ00839 825 aaKnown RBP eCLIP25.75■■□□□ 1.71
PDLIM2-204ENST00000397760 NUTM2GQ5VZR2 741 aa25.75■■□□□ 1.71
PDLIM2-204ENST00000397760 NPHP3Q7Z494 1330 aa25.74■■□□□ 1.71
PDLIM2-204ENST00000397760 DDX17Q92841 729 aaKnown RBP25.74■■□□□ 1.71
PDLIM2-204ENST00000397760 PIK3C2AO00443 1686 aa25.73■■□□□ 1.71
PDLIM2-204ENST00000397760 PPM1GO15355 546 aaPredicted RBP25.72■■□□□ 1.71
PDLIM2-204ENST00000397760 ADAMTS8Q9UP79 889 aa25.72■■□□□ 1.71
PDLIM2-204ENST00000397760 RRS1Q15050 365 aaKnown RBP25.72■■□□□ 1.71
PDLIM2-204ENST00000397760 EMILIN1Q9Y6C2 1016 aa25.72■■□□□ 1.71
PDLIM2-204ENST00000397760 SOX12O15370 315 aa25.7■■□□□ 1.71
PDLIM2-204ENST00000397760 ERICH6BQ5W0A0 696 aa25.69■■□□□ 1.7
PDLIM2-204ENST00000397760 LMOD2Q6P5Q4 547 aa25.69■■□□□ 1.7
PDLIM2-204ENST00000397760 PNPLA6Q8IY17 1366 aa25.69■■□□□ 1.7
PDLIM2-204ENST00000397760 INSRP06213 1382 aa25.67■■□□□ 1.7
PDLIM2-204ENST00000397760 SMG6Q86US8 1419 aaKnown RBP25.67■■□□□ 1.7
PDLIM2-204ENST00000397760 SBNO1A3KN83 1393 aa25.66■■□□□ 1.7
PDLIM2-204ENST00000397760 TRPM3Q9HCF6 1732 aaPredicted RBP25.65■■□□□ 1.7
PDLIM2-204ENST00000397760 COL3A1P02461 1466 aaPredicted RBP25.64■■□□□ 1.7
PDLIM2-204ENST00000397760 DIAPH1O60610 1272 aaKnown RBP25.64■■□□□ 1.7
PDLIM2-204ENST00000397760 NUDCQ9Y266 331 aa25.64■■□□□ 1.7
PDLIM2-204ENST00000397760 PXDNQ92626 1479 aa25.64■■□□□ 1.69
PDLIM2-204ENST00000397760 USP54Q70EL1 1684 aa25.63■■□□□ 1.69
PDLIM2-204ENST00000397760 MAP2P11137 1827 aaKnown RBP25.63■■□□□ 1.69
PDLIM2-204ENST00000397760 MAP3K19Q56UN5 1328 aa25.63■■□□□ 1.69
PDLIM2-204ENST00000397760 CDK12Q9NYV4 1490 aaPredicted RBP25.62■■□□□ 1.69
PDLIM2-204ENST00000397760 BLMP54132 1417 aaPredicted RBP25.62■■□□□ 1.69
PDLIM2-204ENST00000397760 KCNH5Q8NCM2 988 aa25.6■■□□□ 1.69
PDLIM2-204ENST00000397760 MARF1Q9Y4F3 1742 aaKnown RBP25.6■■□□□ 1.69
PDLIM2-204ENST00000397760 SPATA31A3Q5VYP0 1347 aa25.6■■□□□ 1.69
PDLIM2-204ENST00000397760 ZBED9Q6R2W3 1325 aa25.6■■□□□ 1.69
PDLIM2-204ENST00000397760 U2SURPO15042 1029 aaKnown RBP25.6■■□□□ 1.69
PDLIM2-204ENST00000397760 SHPRHQ149N8 1683 aa25.6■■□□□ 1.69
PDLIM2-204ENST00000397760 SOS2Q07890 1332 aaPredicted RBP25.59■■□□□ 1.69
PDLIM2-204ENST00000397760 TNS3Q68CZ2 1445 aa25.59■■□□□ 1.69
PDLIM2-204ENST00000397760 SENP3-EIF4A1A0A087X0R7 540 aa25.59■■□□□ 1.69
PDLIM2-204ENST00000397760 U2AF1L5P0DN76 240 aaPredicted RBP25.59■■□□□ 1.69
PDLIM2-204ENST00000397760 U2AF1Q01081 240 aaKnown RBP eCLIP25.59■■□□□ 1.69
PDLIM2-204ENST00000397760 PLEKHG5O94827 1062 aa25.58■■□□□ 1.69
PDLIM2-204ENST00000397760 USP19O94966 1318 aa25.58■■□□□ 1.69
PDLIM2-204ENST00000397760 AMPHP49418 695 aa25.58■■□□□ 1.68
PDLIM2-204ENST00000397760 GCP02774 474 aa25.57■■□□□ 1.68
PDLIM2-204ENST00000397760 CCDC146Q8IYE0 955 aa25.57■■□□□ 1.68
PDLIM2-204ENST00000397760 ALS2Q96Q42 1657 aa25.56■■□□□ 1.68
PDLIM2-204ENST00000397760 IL13P35225 146 aa25.56■■□□□ 1.68
PDLIM2-204ENST00000397760 ARHGEF10O15013 1369 aa25.55■■□□□ 1.68
PDLIM2-204ENST00000397760 FLT4P35916 1363 aa25.55■■□□□ 1.68
PDLIM2-204ENST00000397760 HSP90AB2PQ58FF8 381 aa25.55■■□□□ 1.68
PDLIM2-204ENST00000397760 SLIT3O75094 1523 aa25.54■■□□□ 1.68
PDLIM2-204ENST00000397760 TOM1O60784 492 aa25.53■■□□□ 1.68
PDLIM2-204ENST00000397760 NFAT5O94916 1531 aa25.53■■□□□ 1.68
PDLIM2-204ENST00000397760 KIF24Q5T7B8 1368 aa25.53■■□□□ 1.68
PDLIM2-204ENST00000397760 PEAK1Q9H792 1746 aa25.52■■□□□ 1.68
PDLIM2-204ENST00000397760 EIF4A2Q14240 407 aaKnown RBP25.52■■□□□ 1.68
PDLIM2-204ENST00000397760 HOXC9P31274 260 aa25.51■■□□□ 1.67
PDLIM2-204ENST00000397760 RUNDC1Q96C34 613 aa25.51■■□□□ 1.67
PDLIM2-204ENST00000397760 SALL2Q9Y467 1007 aaPredicted RBP25.51■■□□□ 1.67
PDLIM2-204ENST00000397760 NHSL1Q5SYE7 1610 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms