RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 C19orf67A6NJJ6 358 aa12.98□□□□□ -0.33
CAPN3-208ENST00000397204 EVX2Q03828 476 aa12.98□□□□□ -0.33
CAPN3-208ENST00000397204 DHX57Q6P158 1386 aaKnown RBP12.97□□□□□ -0.33
CAPN3-208ENST00000397204 PIK3C2GO75747 1445 aa12.96□□□□□ -0.33
CAPN3-208ENST00000397204 HAP1P54257 671 aaPredicted RBP12.96□□□□□ -0.33
CAPN3-208ENST00000397204 CFAP70Q5T0N1 1121 aa12.96□□□□□ -0.33
CAPN3-208ENST00000397204 ONECUT3O60422 494 aaPredicted RBP12.95□□□□□ -0.34
CAPN3-208ENST00000397204 PLEKHG5O94827 1062 aa12.95□□□□□ -0.34
CAPN3-208ENST00000397204 SLIT2O94813 1529 aa12.94□□□□□ -0.34
CAPN3-208ENST00000397204 VPS72Q15906 364 aa12.94□□□□□ -0.34
CAPN3-208ENST00000397204 PRAM1Q96QH2 718 aa12.94□□□□□ -0.34
CAPN3-208ENST00000397204 POGKQ9P215 609 aa12.94□□□□□ -0.34
CAPN3-208ENST00000397204 SEPT12Q8IYM1 358 aa12.93□□□□□ -0.34
CAPN3-208ENST00000397204 CABLES1Q8TDN4 633 aa12.93□□□□□ -0.34
CAPN3-208ENST00000397204 SBNO1A3KN83 1393 aa12.93□□□□□ -0.34
CAPN3-208ENST00000397204 LMOD2Q6P5Q4 547 aa12.92□□□□□ -0.34
CAPN3-208ENST00000397204 RALGAPBQ86X10 1494 aa12.91□□□□□ -0.34
CAPN3-208ENST00000397204 CD44P16070 742 aaKnown RBP12.91□□□□□ -0.34
CAPN3-208ENST00000397204 SF3B2Q13435 895 aaKnown RBP12.91□□□□□ -0.34
CAPN3-208ENST00000397204 SAFB2Q14151 953 aaKnown RBP eCLIP12.91□□□□□ -0.34
CAPN3-208ENST00000397204 STAC3Q96MF2 364 aa12.91□□□□□ -0.34
CAPN3-208ENST00000397204 ARHGEF10O15013 1369 aa12.91□□□□□ -0.34
CAPN3-208ENST00000397204 BLMP54132 1417 aaPredicted RBP12.9□□□□□ -0.34
CAPN3-208ENST00000397204 TNS3Q68CZ2 1445 aa12.9□□□□□ -0.34
CAPN3-208ENST00000397204 FAM83GA6ND36 823 aa12.9□□□□□ -0.34
CAPN3-208ENST00000397204 VASPP50552 380 aaPredicted RBP12.9□□□□□ -0.34
CAPN3-208ENST00000397204 PMFBP1Q8TBY8 1022 aa12.9□□□□□ -0.34
CAPN3-208ENST00000397204 CCDC9Q9Y3X0 531 aaKnown RBP12.9□□□□□ -0.34
CAPN3-208ENST00000397204 NRXN1Q9ULB1 1477 aa12.9□□□□□ -0.34
CAPN3-208ENST00000397204 KRT27Q7Z3Y8 459 aa12.89□□□□□ -0.35
CAPN3-208ENST00000397204 SP7Q8TDD2 431 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-208ENST00000397204 FMN2Q9NZ56 1722 aa12.88□□□□□ -0.35
CAPN3-208ENST00000397204 KNDC1Q76NI1 1749 aa12.88□□□□□ -0.35
CAPN3-208ENST00000397204 ANKARQ7Z5J8 1434 aa12.88□□□□□ -0.35
CAPN3-208ENST00000397204 KIF1AQ12756 1690 aa12.87□□□□□ -0.35
CAPN3-208ENST00000397204 DEFB132Q7Z7B7 95 aa12.87□□□□□ -0.35
CAPN3-208ENST00000397204 TRAK1Q9UPV9 953 aa12.87□□□□□ -0.35
CAPN3-208ENST00000397204 IFT172Q9UG01 1749 aa12.87□□□□□ -0.35
CAPN3-208ENST00000397204 GPRASP1Q5JY77 1395 aa12.86□□□□□ -0.35
CAPN3-208ENST00000397204 MARF1Q9Y4F3 1742 aaKnown RBP12.86□□□□□ -0.35
CAPN3-208ENST00000397204 GLI3P10071 1580 aa12.86□□□□□ -0.35
CAPN3-208ENST00000397204 EIF3AQ14152 1382 aaKnown RBP12.85□□□□□ -0.35
CAPN3-208ENST00000397204 WASLO00401 505 aaPredicted RBP12.85□□□□□ -0.35
CAPN3-208ENST00000397204 HIRIP3Q9BW71 556 aaPredicted RBP12.85□□□□□ -0.35
CAPN3-208ENST00000397204 BTG4Q9NY30 223 aa12.85□□□□□ -0.35
CAPN3-208ENST00000397204 KDM2AQ9Y2K7 1162 aa12.85□□□□□ -0.35
CAPN3-208ENST00000397204 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.85□□□□□ -0.35
CAPN3-208ENST00000397204 DLC1Q96QB1 1528 aa12.84□□□□□ -0.35
CAPN3-208ENST00000397204 NGDNQ8NEJ9 315 aaKnown RBP12.84□□□□□ -0.35
CAPN3-208ENST00000397204 DCAF11Q8TEB1 546 aa12.84□□□□□ -0.35
CAPN3-208ENST00000397204 MINK1Q8N4C8 1332 aaPredicted RBP12.84□□□□□ -0.35
CAPN3-208ENST00000397204 USP32Q8NFA0 1604 aa12.84□□□□□ -0.35
CAPN3-208ENST00000397204 A0A0G2JS52 829 aa12.83□□□□□ -0.36
CAPN3-208ENST00000397204 HRCP23327 699 aa12.83□□□□□ -0.36
CAPN3-208ENST00000397204 BAG6P46379 1132 aa12.83□□□□□ -0.36
CAPN3-208ENST00000397204 MYT1Q01538 1121 aa12.83□□□□□ -0.36
CAPN3-208ENST00000397204 FAM98CQ17RN3 349 aaKnown RBP12.83□□□□□ -0.36
CAPN3-208ENST00000397204 PRR36Q9H6K5 1346 aa12.82□□□□□ -0.36
CAPN3-208ENST00000397204 RAB3GAP2Q9H2M9 1393 aa12.81□□□□□ -0.36
CAPN3-208ENST00000397204 PAK3O75914 559 aaPredicted RBP12.81□□□□□ -0.36
CAPN3-208ENST00000397204 ZBTB47Q9UFB7 747 aaPredicted RBP12.81□□□□□ -0.36
CAPN3-208ENST00000397204 SPATA31A5Q5VU36 1347 aa12.81□□□□□ -0.36
CAPN3-208ENST00000397204 SPATA31A7Q8IWB4 1347 aa12.81□□□□□ -0.36
CAPN3-208ENST00000397204 NUDT16Q96DE0 195 aaKnown RBP12.8□□□□□ -0.36
CAPN3-208ENST00000397204 RGPD8O14715 1765 aaPredicted RBP12.79□□□□□ -0.36
CAPN3-208ENST00000397204 ADGRB1O14514 1584 aa12.79□□□□□ -0.36
CAPN3-208ENST00000397204 PRDM11Q9NQV5 511 aa12.79□□□□□ -0.36
CAPN3-208ENST00000397204 NWD2Q9ULI1 1742 aa12.78□□□□□ -0.36
CAPN3-208ENST00000397204 CDK19Q9BWU1 502 aa12.77□□□□□ -0.37
CAPN3-208ENST00000397204 ADGRB2O60241 1585 aa12.77□□□□□ -0.37
CAPN3-208ENST00000397204 EN1Q05925 392 aaPredicted RBP12.76□□□□□ -0.37
CAPN3-208ENST00000397204 CCDC61Q9Y6R9 512 aa12.76□□□□□ -0.37
CAPN3-208ENST00000397204 TULP4Q9NRJ4 1543 aa12.76□□□□□ -0.37
CAPN3-208ENST00000397204 BRWD3Q6RI45 1802 aa12.76□□□□□ -0.37
CAPN3-208ENST00000397204 PLEKHG3A1L390 1219 aa12.75□□□□□ -0.37
CAPN3-208ENST00000397204 NBPF8Q3BBV2 869 aa12.75□□□□□ -0.37
CAPN3-208ENST00000397204 SPATA31A1Q5TZJ5 1347 aa12.75□□□□□ -0.37
CAPN3-208ENST00000397204 FAM196AQ6ZSG2 479 aa12.75□□□□□ -0.37
CAPN3-208ENST00000397204 KLHL34Q8N239 644 aa12.75□□□□□ -0.37
CAPN3-208ENST00000397204 PSDA5PKW4 1024 aaPredicted RBP12.74□□□□□ -0.37
CAPN3-208ENST00000397204 FAM182BQ5T319 152 aa12.74□□□□□ -0.37
CAPN3-208ENST00000397204 RASEFQ8IZ41 740 aa12.74□□□□□ -0.37
CAPN3-208ENST00000397204 TSPYL2Q9H2G4 693 aaPredicted RBP12.74□□□□□ -0.37
CAPN3-208ENST00000397204 PLCH1Q4KWH8 1693 aa12.73□□□□□ -0.37
CAPN3-208ENST00000397204 KIAA0232Q92628 1395 aa12.73□□□□□ -0.37
CAPN3-208ENST00000397204 ACEP12821 1306 aa12.73□□□□□ -0.37
CAPN3-208ENST00000397204 EVA1CP58658 441 aa12.73□□□□□ -0.37
CAPN3-208ENST00000397204 ZC3H6P61129 1189 aaKnown RBP12.73□□□□□ -0.37
CAPN3-208ENST00000397204 CHRNA2Q15822 529 aa12.73□□□□□ -0.37
CAPN3-208ENST00000397204 COL14A1Q05707 1796 aaKnown RBP12.72□□□□□ -0.37
CAPN3-208ENST00000397204 TRPM3Q9HCF6 1732 aaPredicted RBP12.72□□□□□ -0.37
CAPN3-208ENST00000397204 NUBP1P53384 320 aa12.72□□□□□ -0.37
CAPN3-208ENST00000397204 BARGINQ6ZT62 677 aa12.72□□□□□ -0.37
CAPN3-208ENST00000397204 IFNLR1Q8IU57 520 aaPredicted RBP12.72□□□□□ -0.37
CAPN3-208ENST00000397204 STRN4Q9NRL3 753 aa12.72□□□□□ -0.37
CAPN3-208ENST00000397204 POLR3AO14802 1390 aaPredicted RBP12.71□□□□□ -0.37
CAPN3-208ENST00000397204 ALS2Q96Q42 1657 aa12.71□□□□□ -0.37
CAPN3-208ENST00000397204 R3HDM1Q15032 1099 aaKnown RBP12.71□□□□□ -0.37
CAPN3-208ENST00000397204 NUTM2GQ5VZR2 741 aa12.71□□□□□ -0.37
CAPN3-208ENST00000397204 ABTB2Q8N961 1025 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms