RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 KIF20BQ96Q89 1820 aa20.22■□□□□ 0.83
CAPN3-207ENST00000397200 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.21■□□□□ 0.83
CAPN3-207ENST00000397200 CGNL1Q0VF96 1302 aa20.21■□□□□ 0.83
CAPN3-207ENST00000397200 BRD4O60885 1362 aaPredicted RBP20.21■□□□□ 0.83
CAPN3-207ENST00000397200 NHSL1Q5SYE7 1610 aa20.21■□□□□ 0.83
CAPN3-207ENST00000397200 PIP4K2BP78356 416 aa20.2■□□□□ 0.82
CAPN3-207ENST00000397200 KRT28Q7Z3Y7 464 aa20.2■□□□□ 0.82
CAPN3-207ENST00000397200 SSH2Q76I76 1423 aa20.2■□□□□ 0.82
CAPN3-207ENST00000397200 TTC21BQ7Z4L5 1316 aa20.2■□□□□ 0.82
CAPN3-207ENST00000397200 XPCQ01831 940 aaPredicted RBP20.2■□□□□ 0.82
CAPN3-207ENST00000397200 DDX17Q92841 729 aaKnown RBP20.2■□□□□ 0.82
CAPN3-207ENST00000397200 TRPM3Q9HCF6 1732 aaPredicted RBP20.19■□□□□ 0.82
CAPN3-207ENST00000397200 TTC21AQ8NDW8 1320 aa20.18■□□□□ 0.82
CAPN3-207ENST00000397200 PAK3O75914 559 aaPredicted RBP20.18■□□□□ 0.82
CAPN3-207ENST00000397200 AMER1Q5JTC6 1135 aaPredicted RBP20.18■□□□□ 0.82
CAPN3-207ENST00000397200 PXDNQ92626 1479 aa20.18■□□□□ 0.82
CAPN3-207ENST00000397200 CNGB1Q14028 1251 aaPredicted RBP20.17■□□□□ 0.82
CAPN3-207ENST00000397200 NPC1L1Q9UHC9 1359 aa20.17■□□□□ 0.82
CAPN3-207ENST00000397200 CCDC184Q52MB2 194 aa20.16■□□□□ 0.82
CAPN3-207ENST00000397200 AHDC1Q5TGY3 1603 aaPredicted RBP20.16■□□□□ 0.82
CAPN3-207ENST00000397200 NSD2O96028 1365 aa20.16■□□□□ 0.82
CAPN3-207ENST00000397200 ANKRD26Q9UPS8 1709 aa20.16■□□□□ 0.82
CAPN3-207ENST00000397200 CC2D1BQ5T0F9 858 aaKnown RBP20.16■□□□□ 0.82
CAPN3-207ENST00000397200 FYB1O15117 783 aa20.15■□□□□ 0.82
CAPN3-207ENST00000397200 PIK3C2AO00443 1686 aa20.15■□□□□ 0.82
CAPN3-207ENST00000397200 SOS2Q07890 1332 aaPredicted RBP20.14■□□□□ 0.82
CAPN3-207ENST00000397200 NME9Q86XW9 330 aa20.14■□□□□ 0.81
CAPN3-207ENST00000397200 SBNO1A3KN83 1393 aa20.14■□□□□ 0.81
CAPN3-207ENST00000397200 GGNBP2Q9H3C7 697 aa20.13■□□□□ 0.81
CAPN3-207ENST00000397200 PHLPP1O60346 1717 aa20.13■□□□□ 0.81
CAPN3-207ENST00000397200 ALS2Q96Q42 1657 aa20.13■□□□□ 0.81
CAPN3-207ENST00000397200 ABTB2Q8N961 1025 aa20.13■□□□□ 0.81
CAPN3-207ENST00000397200 TNS3Q68CZ2 1445 aa20.12■□□□□ 0.81
CAPN3-207ENST00000397200 LMOD2Q6P5Q4 547 aa20.11■□□□□ 0.81
CAPN3-207ENST00000397200 MRS2Q9HD23 443 aa20.11■□□□□ 0.81
CAPN3-207ENST00000397200 COG3Q96JB2 828 aa20.1■□□□□ 0.81
CAPN3-207ENST00000397200 USP54Q70EL1 1684 aa20.1■□□□□ 0.81
CAPN3-207ENST00000397200 MORC1Q86VD1 984 aa20.09■□□□□ 0.81
CAPN3-207ENST00000397200 ZRANB1Q9UGI0 708 aa20.09■□□□□ 0.81
CAPN3-207ENST00000397200 SPATA31A3Q5VYP0 1347 aa20.09■□□□□ 0.81
CAPN3-207ENST00000397200 USP31Q70CQ4 1352 aa20.09■□□□□ 0.81
CAPN3-207ENST00000397200 PARD3Q8TEW0 1356 aa20.09■□□□□ 0.81
CAPN3-207ENST00000397200 NLRP6P59044 892 aa20.09■□□□□ 0.81
CAPN3-207ENST00000397200 RALBP1Q15311 655 aa20.09■□□□□ 0.81
CAPN3-207ENST00000397200 NUTM2GQ5VZR2 741 aa20.09■□□□□ 0.81
CAPN3-207ENST00000397200 OVOS2A0A0J9YW53 1432 aa20.08■□□□□ 0.8
CAPN3-207ENST00000397200 OVOS2Q6IE36 1432 aa20.08■□□□□ 0.8
CAPN3-207ENST00000397200 COL16A1Q07092 1604 aaPredicted RBP20.08■□□□□ 0.8
CAPN3-207ENST00000397200 ARHGEF10O15013 1369 aa20.07■□□□□ 0.8
CAPN3-207ENST00000397200 MARF1Q9Y4F3 1742 aaKnown RBP20.07■□□□□ 0.8
CAPN3-207ENST00000397200 HNRNPUQ00839 825 aaKnown RBP eCLIP20.06■□□□□ 0.8
CAPN3-207ENST00000397200 NLRP13Q86W25 1043 aa20.06■□□□□ 0.8
CAPN3-207ENST00000397200 LRRC59Q96AG4 307 aaKnown RBP20.05■□□□□ 0.8
CAPN3-207ENST00000397200 SUPT16HQ9Y5B9 1047 aaKnown RBP20.04■□□□□ 0.8
CAPN3-207ENST00000397200 MYBBP1AQ9BQG0 1328 aaKnown RBP20.04■□□□□ 0.8
CAPN3-207ENST00000397200 TNNT2P45379 298 aaPredicted RBP20.03■□□□□ 0.8
CAPN3-207ENST00000397200 ZBED9Q6R2W3 1325 aa20.02■□□□□ 0.8
CAPN3-207ENST00000397200 MED1Q15648 1581 aaPredicted RBP20.02■□□□□ 0.8
CAPN3-207ENST00000397200 PLEKHG5O94827 1062 aa20.01■□□□□ 0.79
CAPN3-207ENST00000397200 USP19O94966 1318 aa20.01■□□□□ 0.79
CAPN3-207ENST00000397200 PHRF1Q9P1Y6 1649 aaKnown RBP20■□□□□ 0.79
CAPN3-207ENST00000397200 SLIT3O75094 1523 aa20■□□□□ 0.79
CAPN3-207ENST00000397200 CRYBG1Q9Y4K1 1723 aa20■□□□□ 0.79
CAPN3-207ENST00000397200 SOX12O15370 315 aa19.99■□□□□ 0.79
CAPN3-207ENST00000397200 MAP2P11137 1827 aaKnown RBP19.99■□□□□ 0.79
CAPN3-207ENST00000397200 PPP2R1AP30153 589 aa19.98■□□□□ 0.79
CAPN3-207ENST00000397200 KCNH5Q8NCM2 988 aa19.98■□□□□ 0.79
CAPN3-207ENST00000397200 COL22A1Q8NFW1 1626 aaPredicted RBP19.98■□□□□ 0.79
CAPN3-207ENST00000397200 AATKQ6ZMQ8 1374 aa19.98■□□□□ 0.79
CAPN3-207ENST00000397200 FAM9BQ8IZU0 186 aa19.98■□□□□ 0.79
CAPN3-207ENST00000397200 ABCA3Q99758 1704 aa19.97■□□□□ 0.79
CAPN3-207ENST00000397200 PNPLA6Q8IY17 1366 aa19.97■□□□□ 0.79
CAPN3-207ENST00000397200 NFAT5O94916 1531 aa19.96■□□□□ 0.79
CAPN3-207ENST00000397200 GCP02774 474 aa19.96■□□□□ 0.79
CAPN3-207ENST00000397200 HSPA1LP34931 641 aa19.96■□□□□ 0.79
CAPN3-207ENST00000397200 CABLES1Q8TDN4 633 aa19.96■□□□□ 0.79
CAPN3-207ENST00000397200 PNISRQ8TF01 805 aaKnown RBP19.96■□□□□ 0.79
CAPN3-207ENST00000397200 SHPRHQ149N8 1683 aa19.96■□□□□ 0.79
CAPN3-207ENST00000397200 FBLN1P23142 703 aa19.95■□□□□ 0.78
CAPN3-207ENST00000397200 HAP1P54257 671 aaPredicted RBP19.94■□□□□ 0.78
CAPN3-207ENST00000397200 LTN1O94822 1766 aa19.94■□□□□ 0.78
CAPN3-207ENST00000397200 RRS1Q15050 365 aaKnown RBP19.94■□□□□ 0.78
CAPN3-207ENST00000397200 INSRP06213 1382 aa19.93■□□□□ 0.78
CAPN3-207ENST00000397200 JCADQ9P266 1359 aa19.93■□□□□ 0.78
CAPN3-207ENST00000397200 POLKQ9UBT6 870 aa19.93■□□□□ 0.78
CAPN3-207ENST00000397200 MTHFSP49914 203 aa19.92■□□□□ 0.78
CAPN3-207ENST00000397200 FBXO41Q8TF61 875 aa19.92■□□□□ 0.78
CAPN3-207ENST00000397200 EMILIN1Q9Y6C2 1016 aa19.91■□□□□ 0.78
CAPN3-207ENST00000397200 SMG6Q86US8 1419 aaKnown RBP19.91■□□□□ 0.78
CAPN3-207ENST00000397200 PPM1GO15355 546 aaPredicted RBP19.91■□□□□ 0.78
CAPN3-207ENST00000397200 MAP3K19Q56UN5 1328 aa19.9■□□□□ 0.78
CAPN3-207ENST00000397200 ZBTB7CA1YPR0 619 aa19.89■□□□□ 0.77
CAPN3-207ENST00000397200 AMPHP49418 695 aa19.89■□□□□ 0.77
CAPN3-207ENST00000397200 ZC3H6P61129 1189 aaKnown RBP19.89■□□□□ 0.77
CAPN3-207ENST00000397200 PEAK1Q9H792 1746 aa19.89■□□□□ 0.77
CAPN3-207ENST00000397200 CDK12Q9NYV4 1490 aaPredicted RBP19.89■□□□□ 0.77
CAPN3-207ENST00000397200 CFAP53Q96M91 514 aa19.88■□□□□ 0.77
CAPN3-207ENST00000397200 KIF24Q5T7B8 1368 aa19.88■□□□□ 0.77
CAPN3-207ENST00000397200 ARHGEF25Q86VW2 580 aa19.87■□□□□ 0.77
CAPN3-207ENST00000397200 RTL1A6NKG5 1358 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms