RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 NUCB2P80303 420 aa8.59□□□□□ -1.03
UPF2-203ENST00000397053 TRIM22Q8IYM9 498 aa8.59□□□□□ -1.03
UPF2-203ENST00000397053 RUNDC1Q96C34 613 aa8.59□□□□□ -1.03
UPF2-203ENST00000397053 SCLT1Q96NL6 688 aa8.59□□□□□ -1.03
UPF2-203ENST00000397053 CCDC180Q9P1Z9 1646 aa8.59□□□□□ -1.03
UPF2-203ENST00000397053 ANKRD18AQ8IVF6 992 aa8.59□□□□□ -1.03
UPF2-203ENST00000397053 FMNL2Q96PY5 1086 aa8.59□□□□□ -1.03
UPF2-203ENST00000397053 MIA2Q96PC5 1412 aa8.59□□□□□ -1.04
UPF2-203ENST00000397053 NINLQ9Y2I6 1382 aa8.58□□□□□ -1.04
UPF2-203ENST00000397053 SKIDA1Q1XH10 827 aa8.58□□□□□ -1.04
UPF2-203ENST00000397053 VPS8Q8N3P4 1428 aa8.58□□□□□ -1.04
UPF2-203ENST00000397053 KINO60870 393 aaKnown RBP8.58□□□□□ -1.04
UPF2-203ENST00000397053 BICDL1Q6ZP65 573 aa8.58□□□□□ -1.04
UPF2-203ENST00000397053 ZNF76P36508 570 aa8.58□□□□□ -1.04
UPF2-203ENST00000397053 MATR3P43243 847 aaKnown RBP eCLIP8.58□□□□□ -1.045e-8■■■■□ 26.3
UPF2-203ENST00000397053 ERC1Q8IUD2 1116 aa8.58□□□□□ -1.04
UPF2-203ENST00000397053 STK11IPQ8N1F8 1099 aa8.58□□□□□ -1.04
UPF2-203ENST00000397053 LUC7LQ9NQ29 371 aaKnown RBP8.58□□□□□ -1.04
UPF2-203ENST00000397053 BMP2KQ9NSY1 1161 aaPredicted RBP8.58□□□□□ -1.04
UPF2-203ENST00000397053 SEPT7Q16181 437 aaKnown RBP8.58□□□□□ -1.04
UPF2-203ENST00000397053 ZNF771Q7L3S4 317 aaPredicted RBP8.58□□□□□ -1.04
UPF2-203ENST00000397053 SMARCE1Q969G3 411 aa8.58□□□□□ -1.04
UPF2-203ENST00000397053 ZNHIT6Q9NWK9 470 aaKnown RBP8.58□□□□□ -1.04
UPF2-203ENST00000397053 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.58□□□□□ -1.04
UPF2-203ENST00000397053 EZRP15311 586 aaKnown RBP8.57□□□□□ -1.04
UPF2-203ENST00000397053 PDCP20941 246 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 STK38Q15208 465 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 CCDC57Q2TAC2 916 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 JMYQ8N9B5 988 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 CRBNQ96SW2 442 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 STIM1Q13586 685 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 CCDC181Q5TID7 509 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 MAP7D2Q96T17 732 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 CABP2Q9NPB3 220 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 HIP1O00291 1037 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 ERLIN2O94905 339 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 TANGO6Q9C0B7 1094 aa8.57□□□□□ -1.04
UPF2-203ENST00000397053 HDGFL1Q5TGJ6 251 aa8.56□□□□□ -1.04
UPF2-203ENST00000397053 ZNF530Q6P9A1 599 aaPredicted RBP8.56□□□□□ -1.04
UPF2-203ENST00000397053 SPG7Q9UQ90 795 aa8.56□□□□□ -1.04
UPF2-203ENST00000397053 NUP133Q8WUM0 1156 aa8.56□□□□□ -1.04
UPF2-203ENST00000397053 WDR70Q9NW82 654 aa8.56□□□□□ -1.04
UPF2-203ENST00000397053 PDE4AP27815 886 aa8.56□□□□□ -1.04
UPF2-203ENST00000397053 TMEM132EQ6IEE7 984 aa8.56□□□□□ -1.04
UPF2-203ENST00000397053 ERCC4Q92889 916 aaPredicted RBP8.56□□□□□ -1.04
UPF2-203ENST00000397053 H0YHG0 523 aa8.56□□□□□ -1.04
UPF2-203ENST00000397053 FHOD3Q2V2M9 1422 aa8.56□□□□□ -1.04
UPF2-203ENST00000397053 SMG6Q86US8 1419 aaKnown RBP8.56□□□□□ -1.04
UPF2-203ENST00000397053 NACADO15069 1562 aa8.55□□□□□ -1.04
UPF2-203ENST00000397053 EXOC6Q8TAG9 804 aa8.55□□□□□ -1.04
UPF2-203ENST00000397053 DNAI2Q9GZS0 605 aa8.55□□□□□ -1.04
UPF2-203ENST00000397053 RAI14Q9P0K7 980 aa8.55□□□□□ -1.04
UPF2-203ENST00000397053 DEF6Q9H4E7 631 aa8.55□□□□□ -1.04
UPF2-203ENST00000397053 ANKLE2Q86XL3 938 aa8.55□□□□□ -1.04
UPF2-203ENST00000397053 CEP126Q9P2H0 1117 aa8.55□□□□□ -1.04
UPF2-203ENST00000397053 STAC3Q96MF2 364 aa8.55□□□□□ -1.04
UPF2-203ENST00000397053 HSP90AA2PQ14568 343 aaPredicted RBP8.54□□□□□ -1.04
UPF2-203ENST00000397053 USP5P45974 858 aa8.54□□□□□ -1.04
UPF2-203ENST00000397053 NOM1Q5C9Z4 860 aaKnown RBP8.54□□□□□ -1.04
UPF2-203ENST00000397053 ZSCAN25Q6NSZ9 544 aa8.54□□□□□ -1.04
UPF2-203ENST00000397053 BAZ1AQ9NRL2 1556 aaPredicted RBP8.54□□□□□ -1.04
UPF2-203ENST00000397053 CCDC69A6NI79 296 aa8.54□□□□□ -1.04
UPF2-203ENST00000397053 CDC45O75419 566 aa8.54□□□□□ -1.04
UPF2-203ENST00000397053 SMC2O95347 1197 aa8.54□□□□□ -1.04
UPF2-203ENST00000397053 MTHFSP49914 203 aa8.54□□□□□ -1.04
UPF2-203ENST00000397053 CRACR2BQ8N4Y2 399 aaPredicted RBP8.54□□□□□ -1.04
UPF2-203ENST00000397053 UBAC1Q9BSL1 405 aa8.54□□□□□ -1.04
UPF2-203ENST00000397053 SEPT11Q9NVA2 429 aaKnown RBP8.54□□□□□ -1.04
UPF2-203ENST00000397053 LRP2BPQ9P2M1 347 aa8.54□□□□□ -1.04
UPF2-203ENST00000397053 TDO2P48775 406 aa8.54□□□□□ -1.04
UPF2-203ENST00000397053 RRP1P56182 461 aaKnown RBP8.54□□□□□ -1.04
UPF2-203ENST00000397053 ZNF396Q96N95 335 aaPredicted RBP8.54□□□□□ -1.04
UPF2-203ENST00000397053 TRIM5Q9C035 493 aa8.54□□□□□ -1.04
UPF2-203ENST00000397053 IGHMBP2P38935 993 aaKnown RBP8.53□□□□□ -1.04
UPF2-203ENST00000397053 NOL7Q9UMY1 257 aaKnown RBP8.53□□□□□ -1.04
UPF2-203ENST00000397053 SIL1Q9H173 461 aa8.53□□□□□ -1.04
UPF2-203ENST00000397053 FKBP4Q02790 459 aaKnown RBP eCLIP8.53□□□□□ -1.04
UPF2-203ENST00000397053 PNISRQ8TF01 805 aaKnown RBP8.53□□□□□ -1.04
UPF2-203ENST00000397053 ABCF2Q9UG63 623 aa8.53□□□□□ -1.04
UPF2-203ENST00000397053 SSR1P43307 286 aaKnown RBP8.53□□□□□ -1.04
UPF2-203ENST00000397053 TNIP1Q15025 636 aa8.53□□□□□ -1.04
UPF2-203ENST00000397053 PPP4R3AQ6IN85 833 aa8.53□□□□□ -1.04
UPF2-203ENST00000397053 ZNF428Q96B54 188 aa8.53□□□□□ -1.04
UPF2-203ENST00000397053 TSPYL1Q9H0U9 437 aa8.53□□□□□ -1.04
UPF2-203ENST00000397053 USP47Q96K76 1375 aa8.53□□□□□ -1.04
UPF2-203ENST00000397053 MYL6BP14649 208 aa8.53□□□□□ -1.04
UPF2-203ENST00000397053 AXDND1Q5T1B0 1012 aaPredicted RBP8.53□□□□□ -1.04
UPF2-203ENST00000397053 ZPR1O75312 459 aa8.52□□□□□ -1.05
UPF2-203ENST00000397053 CEBPZQ03701 1054 aaKnown RBP8.52□□□□□ -1.05
UPF2-203ENST00000397053 POTEJP0CG39 1038 aa8.52□□□□□ -1.05
UPF2-203ENST00000397053 PRKAR2BP31323 418 aa8.52□□□□□ -1.05
UPF2-203ENST00000397053 NEK4P51957 841 aa8.52□□□□□ -1.05
UPF2-203ENST00000397053 ENOX2Q16206 610 aaKnown RBP8.52□□□□□ -1.05
UPF2-203ENST00000397053 BCL11BQ9C0K0 894 aaPredicted RBP8.52□□□□□ -1.05
UPF2-203ENST00000397053 TXLNBQ8N3L3 684 aa8.52□□□□□ -1.05
UPF2-203ENST00000397053 PRKRIP1Q9H875 184 aaPredicted RBP8.52□□□□□ -1.05
UPF2-203ENST00000397053 ZNF652Q9Y2D9 606 aa8.52□□□□□ -1.05
UPF2-203ENST00000397053 CETN2P41208 172 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 SRCIN1Q9C0H9 1055 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 ZNF287Q9HBT7 754 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms