RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 NECTIN2Q92692 538 aa12.25□□□□□ -0.45
COL4A4-201ENST00000396625 GGT6Q6P531 493 aa12.24□□□□□ -0.45
COL4A4-201ENST00000396625 TEFQ10587 303 aa12.24□□□□□ -0.45
COL4A4-201ENST00000396625 DDX58O95786 925 aaKnown RBP12.24□□□□□ -0.45
COL4A4-201ENST00000396625 PPM1EQ8WY54 764 aa12.24□□□□□ -0.45
COL4A4-201ENST00000396625 TNMDQ9H2S6 317 aa12.24□□□□□ -0.45
COL4A4-201ENST00000396625 MTMR7Q9Y216 660 aa12.24□□□□□ -0.45
COL4A4-201ENST00000396625 CDC45O75419 566 aa12.24□□□□□ -0.45
COL4A4-201ENST00000396625 FIBPO43427 364 aa12.23□□□□□ -0.45
COL4A4-201ENST00000396625 FMN1Q68DA7 1419 aa12.23□□□□□ -0.45
COL4A4-201ENST00000396625 CNTROBQ8N137 903 aa12.23□□□□□ -0.45
COL4A4-201ENST00000396625 CEBPZQ03701 1054 aaKnown RBP12.23□□□□□ -0.45
COL4A4-201ENST00000396625 IBSPP21815 317 aaPredicted RBP12.23□□□□□ -0.45
COL4A4-201ENST00000396625 PDCL3Q9H2J4 239 aa12.23□□□□□ -0.45
COL4A4-201ENST00000396625 DESP17661 470 aa12.23□□□□□ -0.45
COL4A4-201ENST00000396625 JMYQ8N9B5 988 aa12.23□□□□□ -0.45
COL4A4-201ENST00000396625 CBFA2T2O43439 604 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 WASHC4Q2M389 1173 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 DACH1Q9UI36 760 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 ANKRD30AQ9BXX3 1397 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 KIAA1328Q86T90 577 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 SMARCA2P51531 1590 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 MAP9Q49MG5 647 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 STK38Q15208 465 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 JAKMIP3Q5VZ66 844 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 COG3Q96JB2 828 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 TANGO6Q9C0B7 1094 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 UACAQ9BZF9 1416 aa12.22□□□□□ -0.45
COL4A4-201ENST00000396625 PRPF40AO75400 957 aaKnown RBP12.21□□□□□ -0.45
COL4A4-201ENST00000396625 CRACR2AQ9BSW2 395 aa12.21□□□□□ -0.45
COL4A4-201ENST00000396625 IPO4Q8TEX9 1081 aaKnown RBP12.21□□□□□ -0.45
COL4A4-201ENST00000396625 SLC3A2P08195 630 aaKnown RBP12.21□□□□□ -0.45
COL4A4-201ENST00000396625 CFAP57Q96MR6 1250 aa12.21□□□□□ -0.45
COL4A4-201ENST00000396625 NEBLO76041 1014 aa12.21□□□□□ -0.46
COL4A4-201ENST00000396625 FEZ1Q99689 392 aa12.21□□□□□ -0.46
COL4A4-201ENST00000396625 FKBP5Q13451 457 aaPredicted RBP12.21□□□□□ -0.46
COL4A4-201ENST00000396625 PDCL2Q8N4E4 241 aa12.21□□□□□ -0.46
COL4A4-201ENST00000396625 MPHOSPH9Q99550 1183 aa12.2□□□□□ -0.46
COL4A4-201ENST00000396625 LNPKQ9C0E8 428 aa12.2□□□□□ -0.46
COL4A4-201ENST00000396625 ATP2B1P20020 1258 aa12.2□□□□□ -0.46
COL4A4-201ENST00000396625 CCDC148Q8NFR7 591 aa12.2□□□□□ -0.46
COL4A4-201ENST00000396625 EID1Q9Y6B2 187 aa12.2□□□□□ -0.46
COL4A4-201ENST00000396625 IL27Q8NEV9 243 aa12.2□□□□□ -0.46
COL4A4-201ENST00000396625 CCDC113Q9H0I3 377 aa12.2□□□□□ -0.46
COL4A4-201ENST00000396625 FAM107BQ9H098 131 aa12.19□□□□□ -0.46
COL4A4-201ENST00000396625 ME1P48163 572 aa12.19□□□□□ -0.46
COL4A4-201ENST00000396625 EVA1CP58658 441 aa12.19□□□□□ -0.46
COL4A4-201ENST00000396625 DDX23Q9BUQ8 820 aaKnown RBP12.19□□□□□ -0.46
COL4A4-201ENST00000396625 PRDM10Q9NQV6 1147 aa12.19□□□□□ -0.46
COL4A4-201ENST00000396625 NEUROD6Q96NK8 337 aa12.19□□□□□ -0.46
COL4A4-201ENST00000396625 ANAPC15P60006 121 aa12.19□□□□□ -0.46
COL4A4-201ENST00000396625 SYTL4Q96C24 671 aaPredicted RBP12.18□□□□□ -0.46
COL4A4-201ENST00000396625 API5Q9BZZ5 524 aaKnown RBP12.18□□□□□ -0.46
COL4A4-201ENST00000396625 CALCOCO1Q9P1Z2 691 aa12.18□□□□□ -0.46
COL4A4-201ENST00000396625 SSR1P43307 286 aaKnown RBP12.18□□□□□ -0.46
COL4A4-201ENST00000396625 DNAJC2Q99543 621 aaKnown RBP12.18□□□□□ -0.46
COL4A4-201ENST00000396625 FSD1Q9BTV5 496 aa12.18□□□□□ -0.46
COL4A4-201ENST00000396625 MICALCLQ6ZW33 695 aa12.18□□□□□ -0.46
COL4A4-201ENST00000396625 NUTM2DQ5VT03 806 aaPredicted RBP12.18□□□□□ -0.46
COL4A4-201ENST00000396625 PANK3Q9H999 370 aa12.18□□□□□ -0.46
COL4A4-201ENST00000396625 CCDC144AA2RUR9 1427 aa12.18□□□□□ -0.46
COL4A4-201ENST00000396625 MCM2P49736 904 aa12.17□□□□□ -0.46
COL4A4-201ENST00000396625 RNF187Q5TA31 235 aaPredicted RBP12.17□□□□□ -0.46
COL4A4-201ENST00000396625 CARMIL2Q6F5E8 1435 aa12.17□□□□□ -0.46
COL4A4-201ENST00000396625 EPB41L2O43491 1005 aaKnown RBP12.17□□□□□ -0.46
COL4A4-201ENST00000396625 MCM3P25205 808 aa12.17□□□□□ -0.46
COL4A4-201ENST00000396625 TAF4BQ92750 862 aa12.17□□□□□ -0.46
COL4A4-201ENST00000396625 ARHGAP29Q52LW3 1261 aa12.17□□□□□ -0.46
COL4A4-201ENST00000396625 MPNDQ8N594 471 aa12.17□□□□□ -0.46
COL4A4-201ENST00000396625 GRPEL1Q9HAV7 217 aa12.17□□□□□ -0.46
COL4A4-201ENST00000396625 TRHP20396 242 aaPredicted RBP12.17□□□□□ -0.46
COL4A4-201ENST00000396625 UBE4AQ14139 1066 aa12.17□□□□□ -0.46
COL4A4-201ENST00000396625 ZHX3Q9H4I2 956 aa12.17□□□□□ -0.46
COL4A4-201ENST00000396625 NUTM2FA1L443 756 aa12.16□□□□□ -0.46
COL4A4-201ENST00000396625 LUZP1Q86V48 1076 aa12.16□□□□□ -0.46
COL4A4-201ENST00000396625 CGNQ9P2M7 1197 aaKnown RBP12.16□□□□□ -0.46
COL4A4-201ENST00000396625 USP47Q96K76 1375 aa12.16□□□□□ -0.46
COL4A4-201ENST00000396625 GOPCQ9HD26 462 aa12.16□□□□□ -0.46
COL4A4-201ENST00000396625 MATR3P43243 847 aaKnown RBP eCLIP12.16□□□□□ -0.46
COL4A4-201ENST00000396625 IFFO1Q0D2I5 559 aa12.16□□□□□ -0.46
COL4A4-201ENST00000396625 UBXN4Q92575 508 aa12.16□□□□□ -0.46
COL4A4-201ENST00000396625 CCDC18Q5T9S5 1454 aa12.16□□□□□ -0.46
COL4A4-201ENST00000396625 HIP1O00291 1037 aa12.15□□□□□ -0.46
COL4A4-201ENST00000396625 KANK4Q5T7N3 995 aaPredicted RBP12.15□□□□□ -0.46
COL4A4-201ENST00000396625 TRIM21P19474 475 aaKnown RBP12.15□□□□□ -0.46
COL4A4-201ENST00000396625 TBC1D2BQ9UPU7 963 aa12.15□□□□□ -0.46
COL4A4-201ENST00000396625 CUX2O14529 1486 aa12.15□□□□□ -0.46
COL4A4-201ENST00000396625 PUS7Q96PZ0 661 aaKnown RBP12.15□□□□□ -0.46
COL4A4-201ENST00000396625 ZNF397Q8NF99 534 aaPredicted RBP12.15□□□□□ -0.46
COL4A4-201ENST00000396625 TNNT1P13805 278 aa12.15□□□□□ -0.46
COL4A4-201ENST00000396625 GBP3Q9H0R5 595 aa12.15□□□□□ -0.46
COL4A4-201ENST00000396625 EVC2Q86UK5 1308 aa12.15□□□□□ -0.46
COL4A4-201ENST00000396625 NEK4P51957 841 aa12.15□□□□□ -0.47
COL4A4-201ENST00000396625 SMC1AQ14683 1233 aaKnown RBP12.15□□□□□ -0.47
COL4A4-201ENST00000396625 GCOM1H8Y6P7 765 aaPredicted RBP12.14□□□□□ -0.47
COL4A4-201ENST00000396625 MYZAPP0CAP1 466 aa12.14□□□□□ -0.47
COL4A4-201ENST00000396625 AAMPQ13685 434 aa12.14□□□□□ -0.47
COL4A4-201ENST00000396625 CARMIL1Q5VZK9 1371 aa12.14□□□□□ -0.47
COL4A4-201ENST00000396625 CASQ1P31415 396 aa12.14□□□□□ -0.47
COL4A4-201ENST00000396625 GRIPAP1Q4V328 841 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms