RNA–Protein interactions for RNA: ENST00000394888.8

CPSF7-202, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

APPRIS P4 TSL 2 BASIC

Gene CPSF7, Length 3,650 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-202ENST00000394888 WAPLQ7Z5K2 1190 aa20.09■□□□□ 0.81
CPSF7-202ENST00000394888 PDE3AQ14432 1141 aa20.08■□□□□ 0.81
CPSF7-202ENST00000394888 FAM135BQ49AJ0 1406 aa20.08■□□□□ 0.81
CPSF7-202ENST00000394888 PEAK1Q9H792 1746 aa20.08■□□□□ 0.81
CPSF7-202ENST00000394888 PANK1Q8TE04 598 aa20.08■□□□□ 0.8
CPSF7-202ENST00000394888 MARF1Q9Y4F3 1742 aaKnown RBP20.07■□□□□ 0.8
CPSF7-202ENST00000394888 ADAMTS13Q76LX8 1427 aa20.06■□□□□ 0.8
CPSF7-202ENST00000394888 ZMYM3Q14202 1370 aa20.06■□□□□ 0.8
CPSF7-202ENST00000394888 SRPK2P78362 688 aaKnown RBP20.06■□□□□ 0.8
CPSF7-202ENST00000394888 CABP1Q9NZU7 370 aa20.05■□□□□ 0.8
CPSF7-202ENST00000394888 FBLN1P23142 703 aa20.05■□□□□ 0.8
CPSF7-202ENST00000394888 NEUROD2Q15784 382 aa20.04■□□□□ 0.8
CPSF7-202ENST00000394888 RGPD8O14715 1765 aaPredicted RBP20.04■□□□□ 0.8
CPSF7-202ENST00000394888 USP19O94966 1318 aa20.04■□□□□ 0.8
CPSF7-202ENST00000394888 PCDHB15Q9Y5E8 787 aa20.01■□□□□ 0.79
CPSF7-202ENST00000394888 TMPOP42166 694 aaKnown RBP20.01■□□□□ 0.79
CPSF7-202ENST00000394888 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.01■□□□□ 0.79
CPSF7-202ENST00000394888 COG6Q9Y2V7 657 aa20.01■□□□□ 0.79
CPSF7-202ENST00000394888 RIMS1Q86UR5 1692 aaKnown RBP20.01■□□□□ 0.79
CPSF7-202ENST00000394888 CDK12Q9NYV4 1490 aaPredicted RBP20■□□□□ 0.79
CPSF7-202ENST00000394888 FMN2Q9NZ56 1722 aa20■□□□□ 0.79
CPSF7-202ENST00000394888 ANP32AP39687 249 aaKnown RBP20■□□□□ 0.79
CPSF7-202ENST00000394888 POLKQ9UBT6 870 aa20■□□□□ 0.79
CPSF7-202ENST00000394888 NCKAP5LQ9HCH0 1330 aa20■□□□□ 0.79
CPSF7-202ENST00000394888 EDC4Q6P2E9 1401 aaKnown RBP20■□□□□ 0.79
CPSF7-202ENST00000394888 PPIP5K1Q6PFW1 1433 aa20■□□□□ 0.79
CPSF7-202ENST00000394888 U2AF1L5P0DN76 240 aaPredicted RBP19.99■□□□□ 0.79
CPSF7-202ENST00000394888 U2AF1Q01081 240 aaKnown RBP eCLIP19.99■□□□□ 0.79
CPSF7-202ENST00000394888 CLUAP1Q96AJ1 413 aa19.99■□□□□ 0.79
CPSF7-202ENST00000394888 TSR2Q969E8 191 aaKnown RBP19.99■□□□□ 0.79
CPSF7-202ENST00000394888 PRR36Q9H6K5 1346 aa19.98■□□□□ 0.79
CPSF7-202ENST00000394888 RSPH6AQ9H0K4 717 aa19.98■□□□□ 0.79
CPSF7-202ENST00000394888 PTPRUQ92729 1446 aa19.98■□□□□ 0.79
CPSF7-202ENST00000394888 CFAP53Q96M91 514 aa19.98■□□□□ 0.79
CPSF7-202ENST00000394888 ROBO2Q9HCK4 1378 aa19.97■□□□□ 0.79
CPSF7-202ENST00000394888 TERF2IPQ9NYB0 399 aa19.97■□□□□ 0.79
CPSF7-202ENST00000394888 BCL2L13Q9BXK5 485 aa19.97■□□□□ 0.79
CPSF7-202ENST00000394888 ZRANB1Q9UGI0 708 aa19.97■□□□□ 0.79
CPSF7-202ENST00000394888 POGKQ9P215 609 aa19.96■□□□□ 0.79
CPSF7-202ENST00000394888 TMEM2Q9UHN6 1383 aa19.95■□□□□ 0.78
CPSF7-202ENST00000394888 XRN1Q8IZH2 1706 aaKnown RBP19.94■□□□□ 0.78
CPSF7-202ENST00000394888 AATKQ6ZMQ8 1374 aa19.94■□□□□ 0.78
CPSF7-202ENST00000394888 WASLO00401 505 aaPredicted RBP19.94■□□□□ 0.78
CPSF7-202ENST00000394888 IL16Q14005 1332 aa19.93■□□□□ 0.78
CPSF7-202ENST00000394888 SLIT1O75093 1534 aa19.93■□□□□ 0.78
CPSF7-202ENST00000394888 FAM161AQ3B820 660 aa19.93■□□□□ 0.78
CPSF7-202ENST00000394888 FER1L4A9Z1Z3 1794 aa19.93■□□□□ 0.78
CPSF7-202ENST00000394888 SSH2Q76I76 1423 aa19.93■□□□□ 0.78
CPSF7-202ENST00000394888 USP54Q70EL1 1684 aa19.93■□□□□ 0.78
CPSF7-202ENST00000394888 ARHGAP23Q9P227 1491 aa19.93■□□□□ 0.78
CPSF7-202ENST00000394888 NPM2Q86SE8 214 aaKnown RBP19.92■□□□□ 0.78
CPSF7-202ENST00000394888 SIRT1Q96EB6 747 aa19.92■□□□□ 0.78
CPSF7-202ENST00000394888 MLECQ14165 292 aa19.92■□□□□ 0.78
CPSF7-202ENST00000394888 TNRQ92752 1358 aa19.92■□□□□ 0.78
CPSF7-202ENST00000394888 SEC24BO95487 1268 aa19.92■□□□□ 0.78
CPSF7-202ENST00000394888 PHACTR3Q96KR7 559 aa19.91■□□□□ 0.78
CPSF7-202ENST00000394888 IL13P35225 146 aa19.91■□□□□ 0.78
CPSF7-202ENST00000394888 EXOSC9Q06265 439 aaKnown RBP19.91■□□□□ 0.78
CPSF7-202ENST00000394888 ZBTB47Q9UFB7 747 aaPredicted RBP19.9■□□□□ 0.78
CPSF7-202ENST00000394888 OVOS2A0A0J9YW53 1432 aa19.9■□□□□ 0.78
CPSF7-202ENST00000394888 OVOS2Q6IE36 1432 aa19.9■□□□□ 0.78
CPSF7-202ENST00000394888 PIK3C2AO00443 1686 aa19.9■□□□□ 0.78
CPSF7-202ENST00000394888 NME9Q86XW9 330 aa19.9■□□□□ 0.78
CPSF7-202ENST00000394888 SSH1Q8WYL5 1049 aa19.89■□□□□ 0.77
CPSF7-202ENST00000394888 FRAT1Q92837 279 aaPredicted RBP19.89■□□□□ 0.77
CPSF7-202ENST00000394888 EMILIN1Q9Y6C2 1016 aa19.89■□□□□ 0.77
CPSF7-202ENST00000394888 DIAPH1O60610 1272 aaKnown RBP19.89■□□□□ 0.77
CPSF7-202ENST00000394888 TXNDC2Q86VQ3 553 aa19.89■□□□□ 0.77
CPSF7-202ENST00000394888 HDGFL2Q7Z4V5 671 aaPredicted RBP19.88■□□□□ 0.77
CPSF7-202ENST00000394888 TRIM27P14373 513 aa19.88■□□□□ 0.77
CPSF7-202ENST00000394888 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.88■□□□□ 0.77
CPSF7-202ENST00000394888 MYH16Q9H6N6 1097 aa19.88■□□□□ 0.77
CPSF7-202ENST00000394888 MVPQ14764 893 aaKnown RBP19.87■□□□□ 0.77
CPSF7-202ENST00000394888 U2SURPO15042 1029 aaKnown RBP19.87■□□□□ 0.77
CPSF7-202ENST00000394888 LTKP29376 864 aa19.87■□□□□ 0.77
CPSF7-202ENST00000394888 CT47B1P0C2W7 299 aaPredicted RBP19.87■□□□□ 0.77
CPSF7-202ENST00000394888 PLEKHG1Q9ULL1 1385 aa19.87■□□□□ 0.77
CPSF7-202ENST00000394888 RGS3P49796 1198 aa19.86■□□□□ 0.77
CPSF7-202ENST00000394888 ERICH6Q7L0X2 663 aa19.86■□□□□ 0.77
CPSF7-202ENST00000394888 FCHSD2O94868 740 aa19.85■□□□□ 0.77
CPSF7-202ENST00000394888 NUDT16Q96DE0 195 aaKnown RBP19.85■□□□□ 0.77
CPSF7-202ENST00000394888 ZNF853P0CG23 659 aa19.84■□□□□ 0.77
CPSF7-202ENST00000394888 RIPK4P57078 832 aa19.84■□□□□ 0.77
CPSF7-202ENST00000394888 NBR1Q14596 966 aa19.84■□□□□ 0.77
CPSF7-202ENST00000394888 STAG3Q9UJ98 1225 aa19.83■□□□□ 0.77
CPSF7-202ENST00000394888 PIK3R4Q99570 1358 aa19.83■□□□□ 0.77
CPSF7-202ENST00000394888 LRRC37A3O60309 1634 aa19.83■□□□□ 0.76
CPSF7-202ENST00000394888 PRKAR2BP31323 418 aa19.82■□□□□ 0.76
CPSF7-202ENST00000394888 AAMPQ13685 434 aa19.82■□□□□ 0.76
CPSF7-202ENST00000394888 PTCH1Q13635 1447 aa19.82■□□□□ 0.76
CPSF7-202ENST00000394888 DIP2AQ14689 1571 aa19.82■□□□□ 0.76
CPSF7-202ENST00000394888 BRPF1P55201 1214 aaPredicted RBP19.82■□□□□ 0.76
CPSF7-202ENST00000394888 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.82■□□□□ 0.76
CPSF7-202ENST00000394888 USP6P35125 1406 aa19.8■□□□□ 0.76
CPSF7-202ENST00000394888 SLC4A3P48751 1232 aa19.79■□□□□ 0.76
CPSF7-202ENST00000394888 NOB1Q9ULX3 412 aaKnown RBP19.79■□□□□ 0.76
CPSF7-202ENST00000394888 PDZRN3Q9UPQ7 1066 aa19.79■□□□□ 0.76
CPSF7-202ENST00000394888 ZKSCAN2Q63HK3 967 aa19.79■□□□□ 0.76
CPSF7-202ENST00000394888 THUMPD2Q9BTF0 503 aaKnown RBP19.79■□□□□ 0.76
CPSF7-202ENST00000394888 USP31Q70CQ4 1352 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms