RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 SLIT1O75093 1534 aa23.55■■□□□ 1.36
PCDHA1-202ENST00000394633 MTHFSP49914 203 aa23.55■■□□□ 1.36
PCDHA1-202ENST00000394633 TNNQ9UQP3 1299 aa23.55■■□□□ 1.36
PCDHA1-202ENST00000394633 METP08581 1390 aa23.54■■□□□ 1.36
PCDHA1-202ENST00000394633 FRAT2O75474 233 aaPredicted RBP23.54■■□□□ 1.36
PCDHA1-202ENST00000394633 ARHGAP23Q9P227 1491 aa23.54■■□□□ 1.36
PCDHA1-202ENST00000394633 RLBP1P12271 317 aa23.53■■□□□ 1.36
PCDHA1-202ENST00000394633 TXNDC2Q86VQ3 553 aa23.52■■□□□ 1.36
PCDHA1-202ENST00000394633 CCDC27Q2M243 656 aa23.52■■□□□ 1.36
PCDHA1-202ENST00000394633 PCDHB15Q9Y5E8 787 aa23.52■■□□□ 1.36
PCDHA1-202ENST00000394633 PMFBP1Q8TBY8 1022 aa23.51■■□□□ 1.35
PCDHA1-202ENST00000394633 RTN4Q9NQC3 1192 aaKnown RBP23.51■■□□□ 1.35
PCDHA1-202ENST00000394633 ADAMTS13Q76LX8 1427 aa23.51■■□□□ 1.35
PCDHA1-202ENST00000394633 AAMPQ13685 434 aa23.51■■□□□ 1.35
PCDHA1-202ENST00000394633 TULP4Q9NRJ4 1543 aa23.5■■□□□ 1.35
PCDHA1-202ENST00000394633 ADGRB2O60241 1585 aa23.5■■□□□ 1.35
PCDHA1-202ENST00000394633 HDGFP51858 240 aaKnown RBP23.49■■□□□ 1.35
PCDHA1-202ENST00000394633 CFAP53Q96M91 514 aa23.49■■□□□ 1.35
PCDHA1-202ENST00000394633 BCL2L13Q9BXK5 485 aa23.49■■□□□ 1.35
PCDHA1-202ENST00000394633 PRAM1Q96QH2 718 aa23.49■■□□□ 1.35
PCDHA1-202ENST00000394633 PLEKHG1Q9ULL1 1385 aa23.49■■□□□ 1.35
PCDHA1-202ENST00000394633 THEMISQ8N1K5 641 aaPredicted RBP23.48■■□□□ 1.35
PCDHA1-202ENST00000394633 ZNF142P52746 1687 aaPredicted RBP23.48■■□□□ 1.35
PCDHA1-202ENST00000394633 SETD1BQ9UPS6 1966 aaKnown RBP23.48■■□□□ 1.35
PCDHA1-202ENST00000394633 BRPF3Q9ULD4 1205 aa23.48■■□□□ 1.35
PCDHA1-202ENST00000394633 ANKRD36BQ8N2N9 1353 aa23.46■■□□□ 1.35
PCDHA1-202ENST00000394633 EID1Q9Y6B2 187 aa23.45■■□□□ 1.35
PCDHA1-202ENST00000394633 NSD2O96028 1365 aa23.45■■□□□ 1.34
PCDHA1-202ENST00000394633 NCBP3Q53F19 620 aaKnown RBP23.45■■□□□ 1.34
PCDHA1-202ENST00000394633 SLC26A8Q96RN1 970 aa23.45■■□□□ 1.34
PCDHA1-202ENST00000394633 PDZRN3Q9UPQ7 1066 aa23.45■■□□□ 1.34
PCDHA1-202ENST00000394633 PUS7Q96PZ0 661 aaKnown RBP23.44■■□□□ 1.34
PCDHA1-202ENST00000394633 EVC2Q86UK5 1308 aa23.44■■□□□ 1.34
PCDHA1-202ENST00000394633 WAPLQ7Z5K2 1190 aa23.44■■□□□ 1.34
PCDHA1-202ENST00000394633 MYH16Q9H6N6 1097 aa23.43■■□□□ 1.34
PCDHA1-202ENST00000394633 MED14O60244 1454 aa23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 MINK1Q8N4C8 1332 aaPredicted RBP23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 U2AF1L5P0DN76 240 aaPredicted RBP23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 U2AF1Q01081 240 aaKnown RBP eCLIP23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 POGKQ9P215 609 aa23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 DLC1Q96QB1 1528 aa23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 ABCC11Q96J66 1382 aa23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 BECN1Q14457 450 aa23.41■■□□□ 1.34
PCDHA1-202ENST00000394633 RWDD1Q9H446 243 aaPredicted RBP23.4■■□□□ 1.34
PCDHA1-202ENST00000394633 KNDC1Q76NI1 1749 aa23.39■■□□□ 1.34
PCDHA1-202ENST00000394633 MVPQ14764 893 aaKnown RBP23.39■■□□□ 1.34
PCDHA1-202ENST00000394633 CABP2Q9NPB3 220 aa23.39■■□□□ 1.33
PCDHA1-202ENST00000394633 PTPRUQ92729 1446 aa23.37■■□□□ 1.33
PCDHA1-202ENST00000394633 TBC1D32Q96NH3 1257 aa23.37■■□□□ 1.33
PCDHA1-202ENST00000394633 TECPR2O15040 1411 aa23.37■■□□□ 1.33
PCDHA1-202ENST00000394633 ZKSCAN2Q63HK3 967 aa23.36■■□□□ 1.33
PCDHA1-202ENST00000394633 CPS1P31327 1500 aa23.36■■□□□ 1.33
PCDHA1-202ENST00000394633 ANKRD26Q9UPS8 1709 aa23.36■■□□□ 1.33
PCDHA1-202ENST00000394633 ROBO2Q9HCK4 1378 aa23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 TSR2Q969E8 191 aaKnown RBP23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 COL3A1P02461 1466 aaPredicted RBP23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 DZIP1LQ8IYY4 767 aaKnown RBP23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 SLKQ9H2G2 1235 aaPredicted RBP23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 UPF2Q9HAU5 1272 aaKnown RBP23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 A0A1W2PP64 1363 aa23.34■■□□□ 1.33
PCDHA1-202ENST00000394633 CT47B1P0C2W7 299 aaPredicted RBP23.33■■□□□ 1.33
PCDHA1-202ENST00000394633 PLEKHF1Q96S99 279 aa23.33■■□□□ 1.33
PCDHA1-202ENST00000394633 ANTXR1Q9H6X2 564 aa23.33■■□□□ 1.33
PCDHA1-202ENST00000394633 FTSJ3Q8IY81 847 aaKnown RBP23.32■■□□□ 1.32
PCDHA1-202ENST00000394633 SRPK2P78362 688 aaKnown RBP23.32■■□□□ 1.32
PCDHA1-202ENST00000394633 ANO8Q9HCE9 1232 aaPredicted RBP23.32■■□□□ 1.32
PCDHA1-202ENST00000394633 EXOSC9Q06265 439 aaKnown RBP23.31■■□□□ 1.32
PCDHA1-202ENST00000394633 TBX22Q9Y458 520 aa23.31■■□□□ 1.32
PCDHA1-202ENST00000394633 FAM135BQ49AJ0 1406 aa23.3■■□□□ 1.32
PCDHA1-202ENST00000394633 TMPOP42166 694 aaKnown RBP23.3■■□□□ 1.32
PCDHA1-202ENST00000394633 TBC1D2Q9BYX2 928 aa23.3■■□□□ 1.32
PCDHA1-202ENST00000394633 TRIM35Q9UPQ4 493 aa23.3■■□□□ 1.32
PCDHA1-202ENST00000394633 DIP2AQ14689 1571 aa23.3■■□□□ 1.32
PCDHA1-202ENST00000394633 KDM4FA0A1W2PPD8 638 aa23.29■■□□□ 1.32
PCDHA1-202ENST00000394633 ANKLE2Q86XL3 938 aa23.29■■□□□ 1.32
PCDHA1-202ENST00000394633 SMC4Q9NTJ3 1288 aa23.29■■□□□ 1.32
PCDHA1-202ENST00000394633 U2SURPO15042 1029 aaKnown RBP23.29■■□□□ 1.32
PCDHA1-202ENST00000394633 GGNBP2Q9H3C7 697 aa23.29■■□□□ 1.32
PCDHA1-202ENST00000394633 TRIM27P14373 513 aa23.28■■□□□ 1.32
PCDHA1-202ENST00000394633 CDK19Q9BWU1 502 aa23.28■■□□□ 1.32
PCDHA1-202ENST00000394633 SSH1Q8WYL5 1049 aa23.27■■□□□ 1.32
PCDHA1-202ENST00000394633 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.27■■□□□ 1.31
PCDHA1-202ENST00000394633 AMOTL2Q9Y2J4 779 aa23.27■■□□□ 1.31
PCDHA1-202ENST00000394633 HDAC1Q13547 482 aaPredicted RBP23.25■■□□□ 1.31
PCDHA1-202ENST00000394633 XRN1Q8IZH2 1706 aaKnown RBP23.25■■□□□ 1.31
PCDHA1-202ENST00000394633 CD163L1Q9NR16 1453 aa23.25■■□□□ 1.31
PCDHA1-202ENST00000394633 ATF7IPQ6VMQ6 1270 aa23.24■■□□□ 1.31
PCDHA1-202ENST00000394633 SIRT1Q96EB6 747 aa23.24■■□□□ 1.31
PCDHA1-202ENST00000394633 IL16Q14005 1332 aa23.23■■□□□ 1.31
PCDHA1-202ENST00000394633 DDX19BQ9UMR2 479 aa23.23■■□□□ 1.31
PCDHA1-202ENST00000394633 FYB1O15117 783 aa23.23■■□□□ 1.31
PCDHA1-202ENST00000394633 ITPRIPQ8IWB1 547 aa23.23■■□□□ 1.31
PCDHA1-202ENST00000394633 KIF20BQ96Q89 1820 aa23.22■■□□□ 1.31
PCDHA1-202ENST00000394633 ATAD2Q6PL18 1390 aa23.22■■□□□ 1.31
PCDHA1-202ENST00000394633 NCKAP5LQ9HCH0 1330 aa23.21■■□□□ 1.31
PCDHA1-202ENST00000394633 NOB1Q9ULX3 412 aaKnown RBP23.21■■□□□ 1.31
PCDHA1-202ENST00000394633 WASLO00401 505 aaPredicted RBP23.21■■□□□ 1.31
PCDHA1-202ENST00000394633 KCNA6P17658 529 aa23.21■■□□□ 1.31
PCDHA1-202ENST00000394633 PTCH1Q13635 1447 aa23.21■■□□□ 1.31
PCDHA1-202ENST00000394633 RIPK4P57078 832 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms