RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 NUTM2GQ5VZR2 741 aa10.87□□□□□ -0.67
HMGB3P1-201ENST00000393368 CABP1Q9NZU7 370 aa10.87□□□□□ -0.67
HMGB3P1-201ENST00000393368 POLR3AO14802 1390 aaPredicted RBP10.87□□□□□ -0.67
HMGB3P1-201ENST00000393368 ST20-MTHFSA0A0A6YYL1 179 aa10.86□□□□□ -0.67
HMGB3P1-201ENST00000393368 PLEKHG3A1L390 1219 aa10.86□□□□□ -0.67
HMGB3P1-201ENST00000393368 NGLY1Q96IV0 654 aa10.86□□□□□ -0.67
HMGB3P1-201ENST00000393368 HAP1P54257 671 aaPredicted RBP10.85□□□□□ -0.67
HMGB3P1-201ENST00000393368 ARHGEF10O15013 1369 aa10.85□□□□□ -0.67
HMGB3P1-201ENST00000393368 USP47Q96K76 1375 aa10.85□□□□□ -0.67
HMGB3P1-201ENST00000393368 ALS2Q96Q42 1657 aa10.85□□□□□ -0.67
HMGB3P1-201ENST00000393368 ABCA3Q99758 1704 aa10.84□□□□□ -0.67
HMGB3P1-201ENST00000393368 ZNF772Q68DY9 489 aaPredicted RBP10.84□□□□□ -0.67
HMGB3P1-201ENST00000393368 TESK2Q96S53 571 aa10.84□□□□□ -0.67
HMGB3P1-201ENST00000393368 SBNO2Q9Y2G9 1366 aa10.84□□□□□ -0.67
HMGB3P1-201ENST00000393368 USP21Q9UK80 565 aa10.83□□□□□ -0.68
HMGB3P1-201ENST00000393368 TIMELESSQ9UNS1 1208 aa10.83□□□□□ -0.68
HMGB3P1-201ENST00000393368 SOCS7O14512 581 aa10.82□□□□□ -0.68
HMGB3P1-201ENST00000393368 USP6P35125 1406 aa10.82□□□□□ -0.68
HMGB3P1-201ENST00000393368 BCL9LQ86UU0 1499 aa10.81□□□□□ -0.68
HMGB3P1-201ENST00000393368 ATAD2Q6PL18 1390 aa10.81□□□□□ -0.68
HMGB3P1-201ENST00000393368 FNBP4Q8N3X1 1017 aaPredicted RBP10.81□□□□□ -0.68
HMGB3P1-201ENST00000393368 ABTB2Q8N961 1025 aa10.81□□□□□ -0.68
HMGB3P1-201ENST00000393368 TMC1Q8TDI8 760 aa10.81□□□□□ -0.68
HMGB3P1-201ENST00000393368 QTRT2Q9H974 415 aaKnown RBP10.81□□□□□ -0.68
HMGB3P1-201ENST00000393368 MARF1Q9Y4F3 1742 aaKnown RBP10.81□□□□□ -0.68
HMGB3P1-201ENST00000393368 CRYBG1Q9Y4K1 1723 aa10.81□□□□□ -0.68
HMGB3P1-201ENST00000393368 SLC12A5Q9H2X9 1139 aa10.8□□□□□ -0.68
HMGB3P1-201ENST00000393368 CD163L1Q9NR16 1453 aa10.8□□□□□ -0.68
HMGB3P1-201ENST00000393368 PHRF1Q9P1Y6 1649 aaKnown RBP10.8□□□□□ -0.68
HMGB3P1-201ENST00000393368 SLIT2O94813 1529 aa10.79□□□□□ -0.68
HMGB3P1-201ENST00000393368 SSH2Q76I76 1423 aa10.79□□□□□ -0.68
HMGB3P1-201ENST00000393368 FAM83GA6ND36 823 aa10.79□□□□□ -0.68
HMGB3P1-201ENST00000393368 RXRBP28702 533 aa10.79□□□□□ -0.68
HMGB3P1-201ENST00000393368 NRKQ7Z2Y5 1582 aa10.78□□□□□ -0.68
HMGB3P1-201ENST00000393368 RGS12O14924 1447 aa10.78□□□□□ -0.68
HMGB3P1-201ENST00000393368 ATRNO75882 1429 aa10.78□□□□□ -0.68
HMGB3P1-201ENST00000393368 CPSF1Q10570 1443 aaKnown RBP10.78□□□□□ -0.68
HMGB3P1-201ENST00000393368 ZC3H6P61129 1189 aaKnown RBP10.78□□□□□ -0.68
HMGB3P1-201ENST00000393368 CHRNA2Q15822 529 aa10.78□□□□□ -0.68
HMGB3P1-201ENST00000393368 TRPC5Q9UL62 973 aaPredicted RBP10.78□□□□□ -0.68
HMGB3P1-201ENST00000393368 PIK3C2AO00443 1686 aa10.78□□□□□ -0.68
HMGB3P1-201ENST00000393368 PLCH1Q4KWH8 1693 aa10.78□□□□□ -0.68
HMGB3P1-201ENST00000393368 TTC21BQ7Z4L5 1316 aa10.78□□□□□ -0.68
HMGB3P1-201ENST00000393368 KTN1Q86UP2 1357 aaKnown RBP10.77□□□□□ -0.68
HMGB3P1-201ENST00000393368 KIAA0232Q92628 1395 aa10.77□□□□□ -0.68
HMGB3P1-201ENST00000393368 UNC5CLQ8IV45 518 aa10.77□□□□□ -0.69
HMGB3P1-201ENST00000393368 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.77□□□□□ -0.69
HMGB3P1-201ENST00000393368 BTG4Q9NY30 223 aa10.77□□□□□ -0.69
HMGB3P1-201ENST00000393368 ZRANB1Q9UGI0 708 aa10.77□□□□□ -0.69
HMGB3P1-201ENST00000393368 USP19O94966 1318 aa10.77□□□□□ -0.69
HMGB3P1-201ENST00000393368 AKAP12Q02952 1782 aa10.77□□□□□ -0.69
HMGB3P1-201ENST00000393368 A0A1W2PP64 1363 aa10.77□□□□□ -0.69
HMGB3P1-201ENST00000393368 ZBTB7CA1YPR0 619 aa10.76□□□□□ -0.69
HMGB3P1-201ENST00000393368 SOX12O15370 315 aa10.76□□□□□ -0.69
HMGB3P1-201ENST00000393368 NLRP6P59044 892 aa10.76□□□□□ -0.69
HMGB3P1-201ENST00000393368 RBM6P78332 1123 aaKnown RBP10.76□□□□□ -0.69
HMGB3P1-201ENST00000393368 TMF1P82094 1093 aa10.76□□□□□ -0.69
HMGB3P1-201ENST00000393368 PRDM11Q9NQV5 511 aa10.76□□□□□ -0.69
HMGB3P1-201ENST00000393368 GLI3P10071 1580 aa10.75□□□□□ -0.69
HMGB3P1-201ENST00000393368 HSPA5P11021 654 aaKnown RBP10.75□□□□□ -0.69
HMGB3P1-201ENST00000393368 NLRP13Q86W25 1043 aa10.75□□□□□ -0.69
HMGB3P1-201ENST00000393368 NME9Q86XW9 330 aa10.75□□□□□ -0.69
HMGB3P1-201ENST00000393368 CCDC9Q9Y3X0 531 aaKnown RBP10.75□□□□□ -0.69
HMGB3P1-201ENST00000393368 MON2Q7Z3U7 1717 aa10.75□□□□□ -0.69
HMGB3P1-201ENST00000393368 COL14A1Q05707 1796 aaKnown RBP10.75□□□□□ -0.69
HMGB3P1-201ENST00000393368 GCP02774 474 aa10.74□□□□□ -0.69
HMGB3P1-201ENST00000393368 HDGFL2Q7Z4V5 671 aaPredicted RBP10.74□□□□□ -0.69
HMGB3P1-201ENST00000393368 GJD4Q96KN9 370 aaPredicted RBP10.74□□□□□ -0.69
HMGB3P1-201ENST00000393368 POLR3GLQ9BT43 218 aa10.74□□□□□ -0.69
HMGB3P1-201ENST00000393368 ZNF692Q9BU19 519 aaPredicted RBP10.74□□□□□ -0.69
HMGB3P1-201ENST00000393368 NRAPQ86VF7 1730 aa10.74□□□□□ -0.69
HMGB3P1-201ENST00000393368 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.74□□□□□ -0.69
HMGB3P1-201ENST00000393368 BRD4O60885 1362 aaPredicted RBP10.74□□□□□ -0.69
HMGB3P1-201ENST00000393368 SLIT3O75094 1523 aa10.74□□□□□ -0.69
HMGB3P1-201ENST00000393368 STRN4Q9NRL3 753 aa10.73□□□□□ -0.69
HMGB3P1-201ENST00000393368 TERF2IPQ9NYB0 399 aa10.73□□□□□ -0.69
HMGB3P1-201ENST00000393368 CDK12Q9NYV4 1490 aaPredicted RBP10.73□□□□□ -0.69
HMGB3P1-201ENST00000393368 EIF4G2P78344 907 aaKnown RBP eCLIP10.72□□□□□ -0.69
HMGB3P1-201ENST00000393368 VPS72Q15906 364 aa10.72□□□□□ -0.69
HMGB3P1-201ENST00000393368 PUS7Q96PZ0 661 aaKnown RBP10.72□□□□□ -0.69
HMGB3P1-201ENST00000393368 TTC21AQ8NDW8 1320 aa10.72□□□□□ -0.69
HMGB3P1-201ENST00000393368 EDC4Q6P2E9 1401 aaKnown RBP10.72□□□□□ -0.69
HMGB3P1-201ENST00000393368 NWD2Q9ULI1 1742 aa10.72□□□□□ -0.69
HMGB3P1-201ENST00000393368 CPDO75976 1380 aa10.71□□□□□ -0.69
HMGB3P1-201ENST00000393368 CAMTA1Q9Y6Y1 1673 aa10.71□□□□□ -0.69
HMGB3P1-201ENST00000393368 MYOM1P52179 1685 aa10.7□□□□□ -0.7
HMGB3P1-201ENST00000393368 ANKRD36BQ8N2N9 1353 aa10.7□□□□□ -0.7
HMGB3P1-201ENST00000393368 NINLQ9Y2I6 1382 aa10.7□□□□□ -0.7
HMGB3P1-201ENST00000393368 SLC24A1O60721 1099 aa10.7□□□□□ -0.7
HMGB3P1-201ENST00000393368 LMO7Q8WWI1 1683 aa10.69□□□□□ -0.7
HMGB3P1-201ENST00000393368 NFAT5O94916 1531 aa10.69□□□□□ -0.7
HMGB3P1-201ENST00000393368 A0A0G2JS52 829 aa10.69□□□□□ -0.7
HMGB3P1-201ENST00000393368 C11orf95C9JLR9 678 aaPredicted RBP10.69□□□□□ -0.7
HMGB3P1-201ENST00000393368 MYT1Q01538 1121 aa10.69□□□□□ -0.7
HMGB3P1-201ENST00000393368 FAM98CQ17RN3 349 aaKnown RBP10.69□□□□□ -0.7
HMGB3P1-201ENST00000393368 LARP1Q6PKG0 1096 aaKnown RBP10.69□□□□□ -0.7
HMGB3P1-201ENST00000393368 USP35Q9P2H5 1018 aa10.69□□□□□ -0.7
HMGB3P1-201ENST00000393368 COL5A2P05997 1499 aaPredicted RBP10.68□□□□□ -0.7
HMGB3P1-201ENST00000393368 OVOS2A0A0J9YW53 1432 aa10.68□□□□□ -0.7
HMGB3P1-201ENST00000393368 OVOS2Q6IE36 1432 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms