RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TSR2Q969E8 191 aaKnown RBP13.17□□□□□ -0.3
COL6A3-205ENST00000392004 KCNH5Q8NCM2 988 aa13.17□□□□□ -0.3
COL6A3-205ENST00000392004 ACSBG1Q96GR2 724 aa13.17□□□□□ -0.3
COL6A3-205ENST00000392004 BTG4Q9NY30 223 aa13.17□□□□□ -0.3
COL6A3-205ENST00000392004 LRRIQ1Q96JM4 1722 aa13.17□□□□□ -0.3
COL6A3-205ENST00000392004 CFAP74Q9C0B2 1584 aa13.17□□□□□ -0.3
COL6A3-205ENST00000392004 ERVK-7P63135 1459 aa13.17□□□□□ -0.3
COL6A3-205ENST00000392004 NPHP4O75161 1426 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-205ENST00000392004 MCM10Q7L590 875 aa13.17□□□□□ -0.3
COL6A3-205ENST00000392004 PLA2R1Q13018 1463 aa13.15□□□□□ -0.3
COL6A3-205ENST00000392004 ROBO2Q9HCK4 1378 aa13.15□□□□□ -0.3
COL6A3-205ENST00000392004 FAM182BQ5T319 152 aa13.15□□□□□ -0.3
COL6A3-205ENST00000392004 AEBP1Q8IUX7 1158 aa13.15□□□□□ -0.3
COL6A3-205ENST00000392004 ANKRD24Q8TF21 1146 aa13.15□□□□□ -0.3
COL6A3-205ENST00000392004 ARAP3Q8WWN8 1544 aa13.15□□□□□ -0.3
COL6A3-205ENST00000392004 RGS3P49796 1198 aa13.15□□□□□ -0.3
COL6A3-205ENST00000392004 ITPRIPQ8IWB1 547 aa13.15□□□□□ -0.3
COL6A3-205ENST00000392004 PLEKHO1Q53GL0 409 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-205ENST00000392004 RUNDC1Q96C34 613 aa13.14□□□□□ -0.31
COL6A3-205ENST00000392004 ABCC3O15438 1527 aa13.14□□□□□ -0.31
COL6A3-205ENST00000392004 SF3B2Q13435 895 aaKnown RBP13.14□□□□□ -0.31
COL6A3-205ENST00000392004 KDM5DQ9BY66 1539 aa13.14□□□□□ -0.31
COL6A3-205ENST00000392004 LRPPRCP42704 1394 aaKnown RBP13.13□□□□□ -0.31
COL6A3-205ENST00000392004 CABP4P57796 275 aa13.13□□□□□ -0.31
COL6A3-205ENST00000392004 EIF5BO60841 1220 aaKnown RBP13.13□□□□□ -0.31
COL6A3-205ENST00000392004 LMOD3Q0VAK6 560 aa13.13□□□□□ -0.31
COL6A3-205ENST00000392004 RCAN3Q9UKA8 241 aa13.13□□□□□ -0.31
COL6A3-205ENST00000392004 CALD1Q05682 793 aaKnown RBP13.12□□□□□ -0.31
COL6A3-205ENST00000392004 EFCAB6Q5THR3 1501 aa13.12□□□□□ -0.31
COL6A3-205ENST00000392004 ZBED9Q6R2W3 1325 aa13.12□□□□□ -0.31
COL6A3-205ENST00000392004 FAM83GA6ND36 823 aa13.12□□□□□ -0.31
COL6A3-205ENST00000392004 WWC3Q9ULE0 1092 aa13.12□□□□□ -0.31
COL6A3-205ENST00000392004 PTPRMP28827 1452 aa13.1□□□□□ -0.31
COL6A3-205ENST00000392004 EXOC5O00471 708 aa13.1□□□□□ -0.31
COL6A3-205ENST00000392004 TAOK2Q9UL54 1235 aa13.1□□□□□ -0.31
COL6A3-205ENST00000392004 MYL6BP14649 208 aa13.1□□□□□ -0.31
COL6A3-205ENST00000392004 FAM98CQ17RN3 349 aaKnown RBP13.1□□□□□ -0.31
COL6A3-205ENST00000392004 A0A1W2PP64 1363 aa13.09□□□□□ -0.31
COL6A3-205ENST00000392004 FKBP5Q13451 457 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-205ENST00000392004 IPO9Q96P70 1041 aaKnown RBP13.08□□□□□ -0.32
COL6A3-205ENST00000392004 MAP3K19Q56UN5 1328 aa13.08□□□□□ -0.32
COL6A3-205ENST00000392004 BICDL1Q6ZP65 573 aa13.08□□□□□ -0.32
COL6A3-205ENST00000392004 POLKQ9UBT6 870 aa13.08□□□□□ -0.32
COL6A3-205ENST00000392004 SMG6Q86US8 1419 aaKnown RBP13.08□□□□□ -0.32
COL6A3-205ENST00000392004 DIP2CQ9Y2E4 1556 aa13.08□□□□□ -0.32
COL6A3-205ENST00000392004 PRR36Q9H6K5 1346 aa13.07□□□□□ -0.32
COL6A3-205ENST00000392004 SPG7Q9UQ90 795 aa13.07□□□□□ -0.32
COL6A3-205ENST00000392004 PIP4K2AP48426 406 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-205ENST00000392004 AMER1Q5JTC6 1135 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-205ENST00000392004 GAS2L2Q8NHY3 880 aa13.06□□□□□ -0.32
COL6A3-205ENST00000392004 PNISRQ8TF01 805 aaKnown RBP13.06□□□□□ -0.32
COL6A3-205ENST00000392004 PLEKHG1Q9ULL1 1385 aa13.06□□□□□ -0.32
COL6A3-205ENST00000392004 ABCC11Q96J66 1382 aa13.06□□□□□ -0.32
COL6A3-205ENST00000392004 A2ML1A8K2U0 1454 aa13.06□□□□□ -0.32
COL6A3-205ENST00000392004 TAF7LQ5H9L4 462 aa13.05□□□□□ -0.32
COL6A3-205ENST00000392004 EXOSC9Q06265 439 aaKnown RBP13.05□□□□□ -0.32
COL6A3-205ENST00000392004 SLC39A6Q13433 755 aa13.05□□□□□ -0.32
COL6A3-205ENST00000392004 BRINP3Q76B58 766 aa13.05□□□□□ -0.32
COL6A3-205ENST00000392004 COG6Q9Y2V7 657 aa13.05□□□□□ -0.32
COL6A3-205ENST00000392004 SPATA31E1Q6ZUB1 1445 aa13.05□□□□□ -0.32
COL6A3-205ENST00000392004 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-205ENST00000392004 ABCA6Q8N139 1617 aa13.04□□□□□ -0.32
COL6A3-205ENST00000392004 ANXA1P04083 346 aa13.04□□□□□ -0.32
COL6A3-205ENST00000392004 CERKQ8TCT0 537 aa13.04□□□□□ -0.32
COL6A3-205ENST00000392004 USP21Q9UK80 565 aa13.04□□□□□ -0.32
COL6A3-205ENST00000392004 EIF4A2Q14240 407 aaKnown RBP13.04□□□□□ -0.32
COL6A3-205ENST00000392004 CCDC85AQ96PX6 553 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-205ENST00000392004 BTBD11A6QL63 1104 aa13.03□□□□□ -0.32
COL6A3-205ENST00000392004 IPO8O15397 1037 aaKnown RBP13.03□□□□□ -0.32
COL6A3-205ENST00000392004 DDB1Q16531 1140 aa13.03□□□□□ -0.32
COL6A3-205ENST00000392004 RALGAPBQ86X10 1494 aa13.02□□□□□ -0.32
COL6A3-205ENST00000392004 NLRP1Q9C000 1473 aa13.02□□□□□ -0.32
COL6A3-205ENST00000392004 EYA1Q99502 592 aa13.02□□□□□ -0.33
COL6A3-205ENST00000392004 TMPOP42166 694 aaKnown RBP13.02□□□□□ -0.33
COL6A3-205ENST00000392004 RIC3Q7Z5B4 369 aa13.02□□□□□ -0.33
COL6A3-205ENST00000392004 TMOD3Q9NYL9 352 aa13.02□□□□□ -0.33
COL6A3-205ENST00000392004 KIDINS220Q9ULH0 1771 aa13.02□□□□□ -0.33
COL6A3-205ENST00000392004 PHF14O94880 888 aa13.01□□□□□ -0.33
COL6A3-205ENST00000392004 HDGFL1Q5TGJ6 251 aa13.01□□□□□ -0.33
COL6A3-205ENST00000392004 ANKRD36BQ8N2N9 1353 aa13.01□□□□□ -0.33
COL6A3-205ENST00000392004 ADGBQ8N7X0 1667 aa13.01□□□□□ -0.33
COL6A3-205ENST00000392004 E9PSI1 815 aa13.01□□□□□ -0.33
COL6A3-205ENST00000392004 HSPA1LP34931 641 aa13.01□□□□□ -0.33
COL6A3-205ENST00000392004 GNAI1P63096 354 aa13.01□□□□□ -0.33
COL6A3-205ENST00000392004 C9orf78Q9NZ63 289 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-205ENST00000392004 PTPRTO14522 1441 aa13□□□□□ -0.33
COL6A3-205ENST00000392004 GNAT3A8MTJ3 354 aa13□□□□□ -0.33
COL6A3-205ENST00000392004 LARP1Q6PKG0 1096 aaKnown RBP13□□□□□ -0.33
COL6A3-205ENST00000392004 BCL11BQ9C0K0 894 aaPredicted RBP13□□□□□ -0.33
COL6A3-205ENST00000392004 PHACTR3Q96KR7 559 aa13□□□□□ -0.33
COL6A3-205ENST00000392004 CLTCQ00610 1675 aaKnown RBP13□□□□□ -0.33
COL6A3-205ENST00000392004 FCHSD2O94868 740 aa12.99□□□□□ -0.33
COL6A3-205ENST00000392004 GLI2P10070 1586 aa12.99□□□□□ -0.33
COL6A3-205ENST00000392004 HOXC9P31274 260 aa12.99□□□□□ -0.33
COL6A3-205ENST00000392004 SLC4A2P04920 1241 aa12.98□□□□□ -0.33
COL6A3-205ENST00000392004 ZCRB1Q8TBF4 217 aaKnown RBP12.98□□□□□ -0.33
COL6A3-205ENST00000392004 TTC21AQ8NDW8 1320 aa12.98□□□□□ -0.33
COL6A3-205ENST00000392004 TWISTNBQ3B726 338 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-205ENST00000392004 PANK1Q8TE04 598 aa12.98□□□□□ -0.33
COL6A3-205ENST00000392004 BRD4O60885 1362 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms