RNA–Protein interactions for RNA: ENST00000380469.7

VPS16-203, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 2 BASIC

Gene VPS16, Length 2,318 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-203ENST00000380469 SMC4Q9NTJ3 1288 aa20.81■□□□□ 0.92
VPS16-203ENST00000380469 PTPRMP28827 1452 aa20.81■□□□□ 0.92
VPS16-203ENST00000380469 EXOSC9Q06265 439 aaKnown RBP20.81■□□□□ 0.92
VPS16-203ENST00000380469 MED14O60244 1454 aa20.81■□□□□ 0.92
VPS16-203ENST00000380469 MYO5BQ9ULV0 1848 aa20.8■□□□□ 0.92
VPS16-203ENST00000380469 TMEM131LA2VDJ0 1609 aa20.8■□□□□ 0.92
VPS16-203ENST00000380469 YTHDC2Q9H6S0 1430 aaKnown RBP20.8■□□□□ 0.92
VPS16-203ENST00000380469 IL16Q14005 1332 aa20.8■□□□□ 0.92
VPS16-203ENST00000380469 TRIM35Q9UPQ4 493 aa20.79■□□□□ 0.92
VPS16-203ENST00000380469 PREX1Q8TCU6 1659 aa20.79■□□□□ 0.92
VPS16-203ENST00000380469 COL3A1P02461 1466 aaPredicted RBP20.79■□□□□ 0.92
VPS16-203ENST00000380469 YEATS2Q9ULM3 1422 aa20.79■□□□□ 0.92
VPS16-203ENST00000380469 DIAPH1O60610 1272 aaKnown RBP20.78■□□□□ 0.92
VPS16-203ENST00000380469 ANKRD26Q9UPS8 1709 aa20.77■□□□□ 0.92
VPS16-203ENST00000380469 RIPK4P57078 832 aa20.77■□□□□ 0.92
VPS16-203ENST00000380469 CLTCQ00610 1675 aaKnown RBP20.76■□□□□ 0.91
VPS16-203ENST00000380469 FRAT2O75474 233 aaPredicted RBP20.76■□□□□ 0.91
VPS16-203ENST00000380469 CDK19Q9BWU1 502 aa20.76■□□□□ 0.91
VPS16-203ENST00000380469 SSH1Q8WYL5 1049 aa20.76■□□□□ 0.91
VPS16-203ENST00000380469 DDX19BQ9UMR2 479 aa20.76■□□□□ 0.91
VPS16-203ENST00000380469 CD163L1Q9NR16 1453 aa20.75■□□□□ 0.91
VPS16-203ENST00000380469 STAG3Q9UJ98 1225 aa20.75■□□□□ 0.91
VPS16-203ENST00000380469 TRIM27P14373 513 aa20.75■□□□□ 0.91
VPS16-203ENST00000380469 ATF7IPQ6VMQ6 1270 aa20.74■□□□□ 0.91
VPS16-203ENST00000380469 NLRP1Q9C000 1473 aa20.74■□□□□ 0.91
VPS16-203ENST00000380469 ITPRIPQ8IWB1 547 aa20.73■□□□□ 0.91
VPS16-203ENST00000380469 TBC1D32Q96NH3 1257 aa20.73■□□□□ 0.91
VPS16-203ENST00000380469 CABP1Q9NZU7 370 aa20.73■□□□□ 0.91
VPS16-203ENST00000380469 FBXO31Q5XUX0 539 aaPredicted RBP20.72■□□□□ 0.91
VPS16-203ENST00000380469 IPO8O15397 1037 aaKnown RBP20.72■□□□□ 0.91
VPS16-203ENST00000380469 HDAC1Q13547 482 aaPredicted RBP20.72■□□□□ 0.91
VPS16-203ENST00000380469 NOB1Q9ULX3 412 aaKnown RBP20.72■□□□□ 0.91
VPS16-203ENST00000380469 ALKQ9UM73 1620 aa20.72■□□□□ 0.91
VPS16-203ENST00000380469 PNPLA6Q8IY17 1366 aa20.72■□□□□ 0.91
VPS16-203ENST00000380469 FCHSD2O94868 740 aa20.71■□□□□ 0.91
VPS16-203ENST00000380469 KIF16BQ96L93 1317 aa20.7■□□□□ 0.9
VPS16-203ENST00000380469 ARHGEF40Q8TER5 1519 aa20.69■□□□□ 0.9
VPS16-203ENST00000380469 IL27Q8NEV9 243 aa20.69■□□□□ 0.9
VPS16-203ENST00000380469 KIF20BQ96Q89 1820 aa20.68■□□□□ 0.9
VPS16-203ENST00000380469 ALDH1L2Q3SY69 923 aa20.67■□□□□ 0.9
VPS16-203ENST00000380469 TMEM57Q8N5G2 664 aa20.66■□□□□ 0.9
VPS16-203ENST00000380469 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.66■□□□□ 0.9
VPS16-203ENST00000380469 SLKQ9H2G2 1235 aaPredicted RBP20.66■□□□□ 0.9
VPS16-203ENST00000380469 ZBTB40Q9NUA8 1239 aa20.64■□□□□ 0.89
VPS16-203ENST00000380469 PRKAR2BP31323 418 aa20.64■□□□□ 0.89
VPS16-203ENST00000380469 SMC5Q8IY18 1101 aa20.64■□□□□ 0.89
VPS16-203ENST00000380469 ZNF428Q96B54 188 aa20.64■□□□□ 0.89
VPS16-203ENST00000380469 RSPH6AQ9H0K4 717 aa20.64■□□□□ 0.89
VPS16-203ENST00000380469 TBC1D2Q9BYX2 928 aa20.63■□□□□ 0.89
VPS16-203ENST00000380469 POLKQ9UBT6 870 aa20.63■□□□□ 0.89
VPS16-203ENST00000380469 PPP6R1Q9UPN7 881 aa20.63■□□□□ 0.89
VPS16-203ENST00000380469 CDC42BPGQ6DT37 1551 aa20.63■□□□□ 0.89
VPS16-203ENST00000380469 ATP7BP35670 1465 aa20.62■□□□□ 0.89
VPS16-203ENST00000380469 CALD1Q05682 793 aaKnown RBP20.62■□□□□ 0.89
VPS16-203ENST00000380469 DLC1Q96QB1 1528 aa20.62■□□□□ 0.89
VPS16-203ENST00000380469 WAPLQ7Z5K2 1190 aa20.61■□□□□ 0.89
VPS16-203ENST00000380469 LRRC7Q96NW7 1537 aa20.61■□□□□ 0.89
VPS16-203ENST00000380469 C22orf23Q9BZE7 217 aa20.61■□□□□ 0.89
VPS16-203ENST00000380469 ANTXR1Q9H6X2 564 aa20.61■□□□□ 0.89
VPS16-203ENST00000380469 FAM135BQ49AJ0 1406 aa20.61■□□□□ 0.89
VPS16-203ENST00000380469 NFE2L2Q16236 605 aa20.6■□□□□ 0.89
VPS16-203ENST00000380469 MFAP1P55081 439 aaKnown RBP20.59■□□□□ 0.89
VPS16-203ENST00000380469 BRPF1P55201 1214 aaPredicted RBP20.59■□□□□ 0.89
VPS16-203ENST00000380469 CHMP4BQ9H444 224 aaKnown RBP20.59■□□□□ 0.89
VPS16-203ENST00000380469 BRPF3Q9ULD4 1205 aa20.59■□□□□ 0.89
VPS16-203ENST00000380469 FBLN1P23142 703 aa20.58■□□□□ 0.88
VPS16-203ENST00000380469 RIMS2Q9UQ26 1411 aa20.57■□□□□ 0.88
VPS16-203ENST00000380469 NUCB1Q02818 461 aa20.57■□□□□ 0.88
VPS16-203ENST00000380469 PPIP5K1Q6PFW1 1433 aa20.57■□□□□ 0.88
VPS16-203ENST00000380469 A2ML1A8K2U0 1454 aa20.57■□□□□ 0.88
VPS16-203ENST00000380469 HMOX1P09601 288 aa20.56■□□□□ 0.88
VPS16-203ENST00000380469 RTN4Q9NQC3 1192 aaKnown RBP20.56■□□□□ 0.88
VPS16-203ENST00000380469 GNAI1P63096 354 aa20.56■□□□□ 0.88
VPS16-203ENST00000380469 FAM69CQ0P6D2 419 aa20.55■□□□□ 0.88
VPS16-203ENST00000380469 PHACTR3Q96KR7 559 aa20.55■□□□□ 0.88
VPS16-203ENST00000380469 MAP2P11137 1827 aaKnown RBP20.55■□□□□ 0.88
VPS16-203ENST00000380469 EDC4Q6P2E9 1401 aaKnown RBP20.54■□□□□ 0.88
VPS16-203ENST00000380469 CYB5RLQ6IPT4 315 aa20.54■□□□□ 0.88
VPS16-203ENST00000380469 ARHGAP45Q92619 1136 aa20.54■□□□□ 0.88
VPS16-203ENST00000380469 WASLO00401 505 aaPredicted RBP20.54■□□□□ 0.88
VPS16-203ENST00000380469 IFT57Q9NWB7 429 aa20.54■□□□□ 0.88
VPS16-203ENST00000380469 VAMP4O75379 141 aa20.53■□□□□ 0.88
VPS16-203ENST00000380469 CHD1LQ86WJ1 897 aa20.53■□□□□ 0.88
VPS16-203ENST00000380469 EMILIN1Q9Y6C2 1016 aa20.53■□□□□ 0.88
VPS16-203ENST00000380469 AGLP35573 1532 aa20.53■□□□□ 0.88
VPS16-203ENST00000380469 IL13P35225 146 aa20.53■□□□□ 0.88
VPS16-203ENST00000380469 MRPL50Q8N5N7 158 aaKnown RBP20.53■□□□□ 0.88
VPS16-203ENST00000380469 REREQ9P2R6 1566 aa20.52■□□□□ 0.88
VPS16-203ENST00000380469 CPSF1Q10570 1443 aaKnown RBP20.52■□□□□ 0.88
VPS16-203ENST00000380469 LMOD3Q0VAK6 560 aa20.52■□□□□ 0.87
VPS16-203ENST00000380469 LNPKQ9C0E8 428 aa20.52■□□□□ 0.87
VPS16-203ENST00000380469 SPATA31D1Q6ZQQ2 1576 aa20.51■□□□□ 0.87
VPS16-203ENST00000380469 NME9Q86XW9 330 aa20.51■□□□□ 0.87
VPS16-203ENST00000380469 SPRYD3Q8NCJ5 442 aa20.51■□□□□ 0.87
VPS16-203ENST00000380469 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.51■□□□□ 0.87
VPS16-203ENST00000380469 THUMPD2Q9BTF0 503 aaKnown RBP20.51■□□□□ 0.87
VPS16-203ENST00000380469 ZBTB7BO15156 539 aaPredicted RBP20.5■□□□□ 0.87
VPS16-203ENST00000380469 RIMBP3CA6NJZ7 1639 aa20.5■□□□□ 0.87
VPS16-203ENST00000380469 RIMBP3BA6NNM3 1639 aa20.5■□□□□ 0.87
VPS16-203ENST00000380469 RIMBP3Q9UFD9 1639 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms