RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CNKSR2Q8WXI2 1034 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 CCDC50Q8IVM0 306 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 BCL11BQ9C0K0 894 aaPredicted RBP10.33□□□□□ -0.76
LIG3-202ENST00000378526 TACC1O75410 805 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 PPFIBP2Q8ND30 876 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 SENP3-EIF4A1A0A087X0R7 540 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 STIM1Q13586 685 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 MSL1Q68DK7 614 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 DHX37Q8IY37 1157 aaKnown RBP10.32□□□□□ -0.76
LIG3-202ENST00000378526 RASSF4Q9H2L5 321 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 FEZ2Q9UHY8 353 aaPredicted RBP10.32□□□□□ -0.76
LIG3-202ENST00000378526 VPS37CA5D8V6 355 aaPredicted RBP10.32□□□□□ -0.76
LIG3-202ENST00000378526 KIF20AO95235 890 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 PTPN14Q15678 1187 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 SPC24Q8NBT2 197 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 SMARCC1Q92922 1105 aaPredicted RBP10.32□□□□□ -0.76
LIG3-202ENST00000378526 TRDNQ13061 729 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 RNF214Q8ND24 703 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 RILPL2Q969X0 211 aa10.32□□□□□ -0.76
LIG3-202ENST00000378526 ZBED9Q6R2W3 1325 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 SERPINC1P01008 464 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 LRCH2Q5VUJ6 765 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 DESP17661 470 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 C10orf67Q8IYJ2 551 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 C22orf23Q9BZE7 217 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 NSRP1Q9H0G5 558 aaKnown RBP10.31□□□□□ -0.76
LIG3-202ENST00000378526 DZIP1LQ8IYY4 767 aaKnown RBP10.31□□□□□ -0.76
LIG3-202ENST00000378526 TUBB4BP68371 445 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 SOGA3Q5TF21 947 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 CCDC83Q8IWF9 413 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 CASQ1P31415 396 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 JMYQ8N9B5 988 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 ZNF396Q96N95 335 aaPredicted RBP10.31□□□□□ -0.76
LIG3-202ENST00000378526 TOMM22Q9NS69 142 aa10.31□□□□□ -0.76
LIG3-202ENST00000378526 CEP120Q8N960 986 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 PAXBP1Q9Y5B6 917 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 A0A1B0GUL7 405 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 ANKRD45Q5TZF3 282 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 FBLN2P98095 1184 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 LUC7L2Q9Y383 392 aaKnown RBP10.3□□□□□ -0.76
LIG3-202ENST00000378526 DDX12PQ92771 950 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 ERICH2A1L162 156 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 ARID4AP29374 1257 aaPredicted RBP10.3□□□□□ -0.76
LIG3-202ENST00000378526 TAOK3Q9H2K8 898 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 ANO2Q9NQ90 1003 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 KLHL10Q6JEL2 608 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 ERC1Q8IUD2 1116 aa10.3□□□□□ -0.76
LIG3-202ENST00000378526 PSMA5P28066 241 aa10.29□□□□□ -0.76
LIG3-202ENST00000378526 IFFO1Q0D2I5 559 aa10.29□□□□□ -0.76
LIG3-202ENST00000378526 SMAP1Q8IYB5 467 aaPredicted RBP10.29□□□□□ -0.76
LIG3-202ENST00000378526 LMAN1P49257 510 aa10.29□□□□□ -0.76
LIG3-202ENST00000378526 GRIPAP1Q4V328 841 aa10.29□□□□□ -0.76
LIG3-202ENST00000378526 ZNF622Q969S3 477 aaKnown RBP eCLIP10.29□□□□□ -0.76
LIG3-202ENST00000378526 NEMFO60524 1076 aa10.29□□□□□ -0.76
LIG3-202ENST00000378526 FBF1Q8TES7 1133 aa10.29□□□□□ -0.76
LIG3-202ENST00000378526 SMC6Q96SB8 1091 aa10.29□□□□□ -0.76
LIG3-202ENST00000378526 RRP1P56182 461 aaKnown RBP10.29□□□□□ -0.76
LIG3-202ENST00000378526 KIF5CO60282 957 aa10.28□□□□□ -0.76
LIG3-202ENST00000378526 STMN1P16949 149 aa10.28□□□□□ -0.76
LIG3-202ENST00000378526 MAP3K7CLP57077 242 aa10.28□□□□□ -0.76
LIG3-202ENST00000378526 RABGAP1Q9Y3P9 1069 aa10.28□□□□□ -0.76
LIG3-202ENST00000378526 NAA15Q9BXJ9 866 aaKnown RBP10.28□□□□□ -0.76
LIG3-202ENST00000378526 EPB41L2O43491 1005 aaKnown RBP10.28□□□□□ -0.76
LIG3-202ENST00000378526 MYCBPQ99417 103 aaPredicted RBP10.28□□□□□ -0.76
LIG3-202ENST00000378526 POGKQ9P215 609 aa10.28□□□□□ -0.76
LIG3-202ENST00000378526 ZNF853P0CG23 659 aa10.28□□□□□ -0.76
LIG3-202ENST00000378526 AP1ARQ63HQ0 302 aa10.28□□□□□ -0.76
LIG3-202ENST00000378526 ZNF397Q8NF99 534 aaPredicted RBP10.28□□□□□ -0.76
LIG3-202ENST00000378526 ARID3CA6NKF2 412 aa10.28□□□□□ -0.76
LIG3-202ENST00000378526 SMTNL1A8MU46 457 aa10.28□□□□□ -0.76
LIG3-202ENST00000378526 NAA25Q14CX7 972 aa10.28□□□□□ -0.76
LIG3-202ENST00000378526 ARHGAP29Q52LW3 1261 aa10.27□□□□□ -0.76
LIG3-202ENST00000378526 BANK1Q8NDB2 785 aa10.27□□□□□ -0.76
LIG3-202ENST00000378526 TAF4BQ92750 862 aa10.27□□□□□ -0.76
LIG3-202ENST00000378526 CETN2P41208 172 aa10.27□□□□□ -0.77
LIG3-202ENST00000378526 FBXW7Q969H0 707 aa10.27□□□□□ -0.77
LIG3-202ENST00000378526 NINLQ9Y2I6 1382 aa10.27□□□□□ -0.77
LIG3-202ENST00000378526 IBSPP21815 317 aaPredicted RBP10.27□□□□□ -0.77
LIG3-202ENST00000378526 NGEFQ8N5V2 710 aa10.27□□□□□ -0.77
LIG3-202ENST00000378526 RBBP5Q15291 538 aaKnown RBP10.27□□□□□ -0.77
LIG3-202ENST00000378526 GBP7Q8N8V2 638 aaPredicted RBP10.27□□□□□ -0.77
LIG3-202ENST00000378526 TNMDQ9H2S6 317 aa10.27□□□□□ -0.77
LIG3-202ENST00000378526 DDX19BQ9UMR2 479 aa10.26□□□□□ -0.77
LIG3-202ENST00000378526 PLCD3Q8N3E9 789 aa10.26□□□□□ -0.77
LIG3-202ENST00000378526 PPFIA2O75334 1257 aa10.26□□□□□ -0.77
LIG3-202ENST00000378526 LMNTD2Q8IXW0 634 aa10.26□□□□□ -0.77
LIG3-202ENST00000378526 CEP112Q8N8E3 955 aa10.26□□□□□ -0.77
LIG3-202ENST00000378526 DHX16O60231 1041 aaKnown RBP10.26□□□□□ -0.77
LIG3-202ENST00000378526 SRPK2P78362 688 aaKnown RBP10.26□□□□□ -0.77
LIG3-202ENST00000378526 STIM2Q9P246 746 aa10.26□□□□□ -0.77
LIG3-202ENST00000378526 CEP57Q86XR8 500 aa10.26□□□□□ -0.77
LIG3-202ENST00000378526 GOLGA3Q08378 1498 aa10.26□□□□□ -0.77
LIG3-202ENST00000378526 SREK1Q8WXA9 508 aaKnown RBP10.25□□□□□ -0.77
LIG3-202ENST00000378526 FERP16591 822 aa10.25□□□□□ -0.77
LIG3-202ENST00000378526 TRERF1Q96PN7 1200 aa10.25□□□□□ -0.77
LIG3-202ENST00000378526 CIZ1Q9ULV3 898 aaPredicted RBP10.25□□□□□ -0.77
LIG3-202ENST00000378526 EBAG9O00559 213 aa10.25□□□□□ -0.77
LIG3-202ENST00000378526 SEPT10Q9P0V9 454 aa10.25□□□□□ -0.77
LIG3-202ENST00000378526 CEP128Q6ZU80 1094 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 ZNF365Q70YC5 407 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms