RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 KIAA1107Q9UPP5 1409 aa14.17□□□□□ -0.14
NPHP4-202ENST00000378161 TSPY26PQ9H489 355 aa14.16□□□□□ -0.14
NPHP4-202ENST00000378161 BCL2L12Q9HB09 334 aa14.16□□□□□ -0.14
NPHP4-202ENST00000378161 ZNF853P0CG23 659 aa14.16□□□□□ -0.14
NPHP4-202ENST00000378161 ATP2B3Q16720 1220 aa14.16□□□□□ -0.14
NPHP4-202ENST00000378161 LIG1P18858 919 aa14.15□□□□□ -0.14
NPHP4-202ENST00000378161 ATP6V1AP38606 617 aa14.15□□□□□ -0.14
NPHP4-202ENST00000378161 TNPO1Q92973 898 aaKnown RBP14.15□□□□□ -0.14
NPHP4-202ENST00000378161 ABCA10Q8WWZ4 1543 aa14.14□□□□□ -0.15
NPHP4-202ENST00000378161 APAF1O14727 1248 aa14.14□□□□□ -0.15
NPHP4-202ENST00000378161 DNAAF4Q8WXU2 420 aa14.14□□□□□ -0.15
NPHP4-202ENST00000378161 SPAG9O60271 1321 aaKnown RBP14.14□□□□□ -0.15
NPHP4-202ENST00000378161 ROCK1Q13464 1354 aa14.14□□□□□ -0.15
NPHP4-202ENST00000378161 MNAT1P51948 309 aa14.14□□□□□ -0.15
NPHP4-202ENST00000378161 CCDC191Q8NCU4 936 aa14.14□□□□□ -0.15
NPHP4-202ENST00000378161 CLUAP1Q96AJ1 413 aa14.14□□□□□ -0.15
NPHP4-202ENST00000378161 MAP2K2P36507 400 aa14.13□□□□□ -0.15
NPHP4-202ENST00000378161 BMS1Q14692 1282 aaKnown RBP14.13□□□□□ -0.15
NPHP4-202ENST00000378161 MBD3O95983 291 aa14.13□□□□□ -0.15
NPHP4-202ENST00000378161 KLHL40Q2TBA0 621 aa14.13□□□□□ -0.15
NPHP4-202ENST00000378161 ITPRIPQ8IWB1 547 aa14.13□□□□□ -0.15
NPHP4-202ENST00000378161 RPAINQ86UA6 219 aa14.13□□□□□ -0.15
NPHP4-202ENST00000378161 TPD52L1Q16890 204 aaPredicted RBP14.12□□□□□ -0.15
NPHP4-202ENST00000378161 TMED8Q6PL24 325 aaPredicted RBP14.12□□□□□ -0.15
NPHP4-202ENST00000378161 CDCA7LQ96GN5 454 aa14.12□□□□□ -0.15
NPHP4-202ENST00000378161 DNMBPQ6XZF7 1577 aa14.12□□□□□ -0.15
NPHP4-202ENST00000378161 KIF3BO15066 747 aa14.12□□□□□ -0.15
NPHP4-202ENST00000378161 DAPK1P53355 1430 aa14.12□□□□□ -0.15
NPHP4-202ENST00000378161 NCOA1Q15788 1441 aa14.12□□□□□ -0.15
NPHP4-202ENST00000378161 ANKRD30BQ9BXX2 1392 aa14.12□□□□□ -0.15
NPHP4-202ENST00000378161 NPHP1O15259 732 aa14.12□□□□□ -0.15
NPHP4-202ENST00000378161 CASQ1P31415 396 aa14.12□□□□□ -0.15
NPHP4-202ENST00000378161 TTLL5Q6EMB2 1281 aa14.12□□□□□ -0.15
NPHP4-202ENST00000378161 GGT6Q6P531 493 aa14.11□□□□□ -0.15
NPHP4-202ENST00000378161 RNF123Q5XPI4 1314 aa14.11□□□□□ -0.15
NPHP4-202ENST00000378161 POLR3GO15318 223 aaPredicted RBP14.11□□□□□ -0.15
NPHP4-202ENST00000378161 HECW1Q76N89 1606 aa14.11□□□□□ -0.15
NPHP4-202ENST00000378161 RNF20Q5VTR2 975 aa14.11□□□□□ -0.15
NPHP4-202ENST00000378161 KCNG1Q9UIX4 513 aa14.11□□□□□ -0.15
NPHP4-202ENST00000378161 KIF1CO43896 1103 aaKnown RBP14.1□□□□□ -0.15
NPHP4-202ENST00000378161 PRPF40AO75400 957 aaKnown RBP14.1□□□□□ -0.15
NPHP4-202ENST00000378161 PTPRGP23470 1445 aa14.1□□□□□ -0.15
NPHP4-202ENST00000378161 COG6Q9Y2V7 657 aa14.1□□□□□ -0.15
NPHP4-202ENST00000378161 PPP2R5AQ15172 486 aa14.1□□□□□ -0.15
NPHP4-202ENST00000378161 RABEP1Q15276 862 aa14.1□□□□□ -0.15
NPHP4-202ENST00000378161 TPM1P09493 284 aa14.09□□□□□ -0.15
NPHP4-202ENST00000378161 MAP2K1Q02750 393 aaPredicted RBP14.09□□□□□ -0.15
NPHP4-202ENST00000378161 GRIN2BQ13224 1484 aa14.09□□□□□ -0.15
NPHP4-202ENST00000378161 ADAMTS8Q9UP79 889 aa14.09□□□□□ -0.15
NPHP4-202ENST00000378161 JRKLQ9Y4A0 524 aa14.09□□□□□ -0.15
NPHP4-202ENST00000378161 TERF2IPQ9NYB0 399 aa14.08□□□□□ -0.15
NPHP4-202ENST00000378161 PTPN23Q9H3S7 1636 aa14.08□□□□□ -0.15
NPHP4-202ENST00000378161 MLECQ14165 292 aa14.08□□□□□ -0.16
NPHP4-202ENST00000378161 GAS2L3Q86XJ1 694 aa14.08□□□□□ -0.16
NPHP4-202ENST00000378161 SAFB2Q14151 953 aaKnown RBP eCLIP14.08□□□□□ -0.16
NPHP4-202ENST00000378161 PRDM2Q13029 1718 aa14.08□□□□□ -0.16
NPHP4-202ENST00000378161 EPRSP07814 1512 aaKnown RBP14.08□□□□□ -0.16
NPHP4-202ENST00000378161 HDGFL2Q7Z4V5 671 aaPredicted RBP14.08□□□□□ -0.16
NPHP4-202ENST00000378161 KRBA2Q6ZNG9 492 aa14.07□□□□□ -0.16
NPHP4-202ENST00000378161 FAM184AQ8NB25 1140 aa14.07□□□□□ -0.16
NPHP4-202ENST00000378161 CPSF2Q9P2I0 782 aaKnown RBP14.07□□□□□ -0.16
NPHP4-202ENST00000378161 TROQ12816 1431 aaPredicted RBP14.07□□□□□ -0.16
NPHP4-202ENST00000378161 ZNF397Q8NF99 534 aaPredicted RBP14.07□□□□□ -0.16
NPHP4-202ENST00000378161 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.07□□□□□ -0.16
NPHP4-202ENST00000378161 BIRC2Q13490 618 aa14.07□□□□□ -0.16
NPHP4-202ENST00000378161 TERF2Q15554 542 aa14.07□□□□□ -0.16
NPHP4-202ENST00000378161 GRIPAP1Q4V328 841 aa14.07□□□□□ -0.16
NPHP4-202ENST00000378161 FOXD4L5Q5VV16 416 aaPredicted RBP14.07□□□□□ -0.16
NPHP4-202ENST00000378161 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.07□□□□□ -0.16
NPHP4-202ENST00000378161 FOXD4L4Q8WXT5 416 aaPredicted RBP14.07□□□□□ -0.16
NPHP4-202ENST00000378161 SYCE3A1L190 88 aa14.06□□□□□ -0.16
NPHP4-202ENST00000378161 GNL2Q13823 731 aaKnown RBP14.06□□□□□ -0.16
NPHP4-202ENST00000378161 RTF1Q92541 710 aaKnown RBP14.06□□□□□ -0.16
NPHP4-202ENST00000378161 LRRFIP2Q9Y608 721 aaKnown RBP14.06□□□□□ -0.16
NPHP4-202ENST00000378161 TBC1D32Q96NH3 1257 aa14.06□□□□□ -0.16
NPHP4-202ENST00000378161 RRP7AQ9Y3A4 280 aaKnown RBP14.06□□□□□ -0.16
NPHP4-202ENST00000378161 CUL7Q14999 1698 aa14.06□□□□□ -0.16
NPHP4-202ENST00000378161 RIOK3O14730 519 aaKnown RBP14.05□□□□□ -0.16
NPHP4-202ENST00000378161 IVLP07476 585 aa14.05□□□□□ -0.16
NPHP4-202ENST00000378161 MMP14P50281 582 aa14.05□□□□□ -0.16
NPHP4-202ENST00000378161 ZKSCAN2Q63HK3 967 aa14.05□□□□□ -0.16
NPHP4-202ENST00000378161 TMCO3Q6UWJ1 677 aa14.05□□□□□ -0.16
NPHP4-202ENST00000378161 UNC13AQ9UPW8 1703 aa14.05□□□□□ -0.16
NPHP4-202ENST00000378161 ZSCAN23Q3MJ62 389 aa14.05□□□□□ -0.16
NPHP4-202ENST00000378161 RPRD2Q5VT52 1461 aaKnown RBP14.05□□□□□ -0.16
NPHP4-202ENST00000378161 HSP90B2PQ58FF3 399 aa14.04□□□□□ -0.16
NPHP4-202ENST00000378161 FAM43BQ6ZT52 329 aaPredicted RBP14.04□□□□□ -0.16
NPHP4-202ENST00000378161 PIBF1Q8WXW3 757 aa14.04□□□□□ -0.16
NPHP4-202ENST00000378161 ACBD3Q9H3P7 528 aa14.04□□□□□ -0.16
NPHP4-202ENST00000378161 FEZ2Q9UHY8 353 aaPredicted RBP14.04□□□□□ -0.16
NPHP4-202ENST00000378161 DHX16O60231 1041 aaKnown RBP14.04□□□□□ -0.16
NPHP4-202ENST00000378161 ANAPC15P60006 121 aa14.04□□□□□ -0.16
NPHP4-202ENST00000378161 HNRNPH2P55795 449 aaKnown RBP14.04□□□□□ -0.16
NPHP4-202ENST00000378161 SPC24Q8NBT2 197 aa14.04□□□□□ -0.16
NPHP4-202ENST00000378161 BCL2L13Q9BXK5 485 aa14.04□□□□□ -0.16
NPHP4-202ENST00000378161 NBPF20Q3BBV1 942 aa14.03□□□□□ -0.16
NPHP4-202ENST00000378161 EP400NLQ6ZTU2 488 aa14.03□□□□□ -0.16
NPHP4-202ENST00000378161 FAM107BQ9H098 131 aa14.03□□□□□ -0.16
NPHP4-202ENST00000378161 SUDS3Q9H7L9 328 aaPredicted RBP14.03□□□□□ -0.16
NPHP4-202ENST00000378161 TRAK1Q9UPV9 953 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms