RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 SLFN5Q08AF3 891 aa11.4□□□□□ -0.58
SNRNP40-202ENST00000373720 TSHZ2Q9NRE2 1034 aa11.4□□□□□ -0.58
SNRNP40-202ENST00000373720 DIP2AQ14689 1571 aa11.4□□□□□ -0.58
SNRNP40-202ENST00000373720 PIK3R4Q99570 1358 aa11.4□□□□□ -0.59
SNRNP40-202ENST00000373720 NKTRP30414 1462 aaKnown RBP11.39□□□□□ -0.59
SNRNP40-202ENST00000373720 SETD1AO15047 1707 aaKnown RBP11.39□□□□□ -0.59
SNRNP40-202ENST00000373720 MS4A1P11836 297 aa11.39□□□□□ -0.59
SNRNP40-202ENST00000373720 CNGB1Q14028 1251 aaPredicted RBP11.39□□□□□ -0.59
SNRNP40-202ENST00000373720 THEMISQ8N1K5 641 aaPredicted RBP11.39□□□□□ -0.59
SNRNP40-202ENST00000373720 ANKRD26Q9UPS8 1709 aa11.39□□□□□ -0.59
SNRNP40-202ENST00000373720 SLIT1O75093 1534 aa11.39□□□□□ -0.59
SNRNP40-202ENST00000373720 EDC4Q6P2E9 1401 aaKnown RBP11.38□□□□□ -0.59
SNRNP40-202ENST00000373720 WASLO00401 505 aaPredicted RBP11.38□□□□□ -0.59
SNRNP40-202ENST00000373720 DUSP27Q5VZP5 1158 aa11.38□□□□□ -0.59
SNRNP40-202ENST00000373720 CDK19Q9BWU1 502 aa11.38□□□□□ -0.59
SNRNP40-202ENST00000373720 TBX22Q9Y458 520 aa11.38□□□□□ -0.59
SNRNP40-202ENST00000373720 CCDC61Q9Y6R9 512 aa11.38□□□□□ -0.59
SNRNP40-202ENST00000373720 A0A1W2PP64 1363 aa11.38□□□□□ -0.59
SNRNP40-202ENST00000373720 AATKQ6ZMQ8 1374 aa11.38□□□□□ -0.59
SNRNP40-202ENST00000373720 PNPLA6Q8IY17 1366 aa11.38□□□□□ -0.59
SNRNP40-202ENST00000373720 IL16Q14005 1332 aa11.37□□□□□ -0.59
SNRNP40-202ENST00000373720 ADGRB2O60241 1585 aa11.37□□□□□ -0.59
SNRNP40-202ENST00000373720 CDC42BPGQ6DT37 1551 aa11.37□□□□□ -0.59
SNRNP40-202ENST00000373720 NEFMP07197 916 aa11.37□□□□□ -0.59
SNRNP40-202ENST00000373720 POTEIP0CG38 1075 aa11.37□□□□□ -0.59
SNRNP40-202ENST00000373720 BCANQ96GW7 911 aa11.37□□□□□ -0.59
SNRNP40-202ENST00000373720 MYH16Q9H6N6 1097 aa11.37□□□□□ -0.59
SNRNP40-202ENST00000373720 UBR1Q8IWV7 1749 aa11.37□□□□□ -0.59
SNRNP40-202ENST00000373720 ARHGAP23Q9P227 1491 aa11.37□□□□□ -0.59
SNRNP40-202ENST00000373720 CPSF1Q10570 1443 aaKnown RBP11.36□□□□□ -0.59
SNRNP40-202ENST00000373720 MTHFSP49914 203 aa11.36□□□□□ -0.59
SNRNP40-202ENST00000373720 CALD1Q05682 793 aaKnown RBP11.36□□□□□ -0.59
SNRNP40-202ENST00000373720 PDE3AQ14432 1141 aa11.36□□□□□ -0.59
SNRNP40-202ENST00000373720 ZNF428Q96B54 188 aa11.36□□□□□ -0.59
SNRNP40-202ENST00000373720 DCBLD2Q96PD2 775 aa11.36□□□□□ -0.59
SNRNP40-202ENST00000373720 CABP2Q9NPB3 220 aa11.36□□□□□ -0.59
SNRNP40-202ENST00000373720 STK26Q9P289 416 aa11.35□□□□□ -0.59
SNRNP40-202ENST00000373720 NRXN3Q9Y4C0 1643 aa11.35□□□□□ -0.59
SNRNP40-202ENST00000373720 FANCIQ9NVI1 1328 aa11.35□□□□□ -0.59
SNRNP40-202ENST00000373720 CD163L1Q9NR16 1453 aa11.34□□□□□ -0.59
SNRNP40-202ENST00000373720 PLEKHH1Q9ULM0 1364 aa11.34□□□□□ -0.59
SNRNP40-202ENST00000373720 APAF1O14727 1248 aa11.34□□□□□ -0.59
SNRNP40-202ENST00000373720 TCERG1O14776 1098 aaKnown RBP11.34□□□□□ -0.59
SNRNP40-202ENST00000373720 FYB1O15117 783 aa11.34□□□□□ -0.59
SNRNP40-202ENST00000373720 FCHSD2O94868 740 aa11.34□□□□□ -0.59
SNRNP40-202ENST00000373720 WWC1Q8IX03 1113 aa11.34□□□□□ -0.59
SNRNP40-202ENST00000373720 PTCH1Q13635 1447 aa11.34□□□□□ -0.59
SNRNP40-202ENST00000373720 MINK1Q8N4C8 1332 aaPredicted RBP11.33□□□□□ -0.6
SNRNP40-202ENST00000373720 PLEKHG3A1L390 1219 aa11.32□□□□□ -0.6
SNRNP40-202ENST00000373720 HAP1P54257 671 aaPredicted RBP11.32□□□□□ -0.6
SNRNP40-202ENST00000373720 MLECQ14165 292 aa11.32□□□□□ -0.6
SNRNP40-202ENST00000373720 ZRANB1Q9UGI0 708 aa11.32□□□□□ -0.6
SNRNP40-202ENST00000373720 SHPRHQ149N8 1683 aa11.32□□□□□ -0.6
SNRNP40-202ENST00000373720 IQSEC2Q5JU85 1478 aa11.32□□□□□ -0.6
SNRNP40-202ENST00000373720 DIAPH1O60610 1272 aaKnown RBP11.31□□□□□ -0.6
SNRNP40-202ENST00000373720 NUTM2DQ5VT03 806 aaPredicted RBP11.31□□□□□ -0.6
SNRNP40-202ENST00000373720 TCP11L2Q8N4U5 519 aa11.31□□□□□ -0.6
SNRNP40-202ENST00000373720 CABP1Q9NZU7 370 aa11.31□□□□□ -0.6
SNRNP40-202ENST00000373720 MAPK8IP3Q9UPT6 1336 aa11.31□□□□□ -0.6
SNRNP40-202ENST00000373720 ADAMTS13Q76LX8 1427 aa11.3□□□□□ -0.6
SNRNP40-202ENST00000373720 LMOD3Q0VAK6 560 aa11.3□□□□□ -0.6
SNRNP40-202ENST00000373720 CDCA7LQ96GN5 454 aa11.3□□□□□ -0.6
SNRNP40-202ENST00000373720 CHMP4BQ9H444 224 aaKnown RBP11.3□□□□□ -0.6
SNRNP40-202ENST00000373720 RBM19Q9Y4C8 960 aaKnown RBP11.3□□□□□ -0.6
SNRNP40-202ENST00000373720 KIF20BQ96Q89 1820 aa11.3□□□□□ -0.6
SNRNP40-202ENST00000373720 METP08581 1390 aa11.29□□□□□ -0.6
SNRNP40-202ENST00000373720 PPIP5K1Q6PFW1 1433 aa11.29□□□□□ -0.6
SNRNP40-202ENST00000373720 U2AF1L5P0DN76 240 aaPredicted RBP11.29□□□□□ -0.6
SNRNP40-202ENST00000373720 U2AF1Q01081 240 aaKnown RBP eCLIP11.29□□□□□ -0.65e-8■■□□□ 11.8
SNRNP40-202ENST00000373720 B4GALNT3Q6L9W6 998 aa11.29□□□□□ -0.6
SNRNP40-202ENST00000373720 CENPQQ7L2Z9 268 aaPredicted RBP11.29□□□□□ -0.6
SNRNP40-202ENST00000373720 TXNDC2Q86VQ3 553 aa11.29□□□□□ -0.6
SNRNP40-202ENST00000373720 NUDT16Q96DE0 195 aaKnown RBP11.29□□□□□ -0.6
SNRNP40-202ENST00000373720 TTC21AQ8NDW8 1320 aa11.29□□□□□ -0.6
SNRNP40-202ENST00000373720 KIF24Q5T7B8 1368 aa11.28□□□□□ -0.6
SNRNP40-202ENST00000373720 ANKARQ7Z5J8 1434 aa11.28□□□□□ -0.6
SNRNP40-202ENST00000373720 COL3A1P02461 1466 aaPredicted RBP11.28□□□□□ -0.6
SNRNP40-202ENST00000373720 CDK12Q9NYV4 1490 aaPredicted RBP11.28□□□□□ -0.6
SNRNP40-202ENST00000373720 IRX6P78412 446 aaPredicted RBP11.28□□□□□ -0.6
SNRNP40-202ENST00000373720 COG3Q96JB2 828 aa11.28□□□□□ -0.6
SNRNP40-202ENST00000373720 FER1L4A9Z1Z3 1794 aa11.27□□□□□ -0.61
SNRNP40-202ENST00000373720 C3P01024 1663 aa11.27□□□□□ -0.61
SNRNP40-202ENST00000373720 LRRC7Q96NW7 1537 aa11.26□□□□□ -0.61
SNRNP40-202ENST00000373720 SAFB2Q14151 953 aaKnown RBP eCLIP11.26□□□□□ -0.61
SNRNP40-202ENST00000373720 ZNF579Q8NAF0 562 aaKnown RBP11.26□□□□□ -0.61
SNRNP40-202ENST00000373720 PLEKHF1Q96S99 279 aa11.26□□□□□ -0.61
SNRNP40-202ENST00000373720 SALL2Q9Y467 1007 aaPredicted RBP11.26□□□□□ -0.61
SNRNP40-202ENST00000373720 MON2Q7Z3U7 1717 aa11.26□□□□□ -0.61
SNRNP40-202ENST00000373720 BRPF1P55201 1214 aaPredicted RBP11.25□□□□□ -0.61
SNRNP40-202ENST00000373720 WAPLQ7Z5K2 1190 aa11.25□□□□□ -0.61
SNRNP40-202ENST00000373720 GGNBP2Q9H3C7 697 aa11.25□□□□□ -0.61
SNRNP40-202ENST00000373720 CREBZFQ9NS37 354 aa11.25□□□□□ -0.61
SNRNP40-202ENST00000373720 ITSN1Q15811 1721 aa11.24□□□□□ -0.61
SNRNP40-202ENST00000373720 AKAP12Q02952 1782 aa11.24□□□□□ -0.61
SNRNP40-202ENST00000373720 IPO8O15397 1037 aaKnown RBP11.24□□□□□ -0.61
SNRNP40-202ENST00000373720 ALDH1L2Q3SY69 923 aa11.24□□□□□ -0.61
SNRNP40-202ENST00000373720 CCDC146Q8IYE0 955 aa11.24□□□□□ -0.61
SNRNP40-202ENST00000373720 EXOC6Q8TAG9 804 aa11.24□□□□□ -0.61
SNRNP40-202ENST00000373720 TTC21BQ7Z4L5 1316 aa11.24□□□□□ -0.61
SNRNP40-202ENST00000373720 RIMS1Q86UR5 1692 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms