RNA–Protein interactions for RNA: ENST00000372056.8

LDB3-203, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-203ENST00000372056 MSH6P52701 1360 aa17.28■□□□□ 0.36
LDB3-203ENST00000372056 TMEM94Q12767 1356 aa17.27■□□□□ 0.36
LDB3-203ENST00000372056 ANKRD26Q9UPS8 1709 aa17.27■□□□□ 0.36
LDB3-203ENST00000372056 FYB1O15117 783 aa17.27■□□□□ 0.35
LDB3-203ENST00000372056 AEBP2Q6ZN18 517 aaPredicted RBP17.27■□□□□ 0.35
LDB3-203ENST00000372056 ADAMTS8Q9UP79 889 aa17.27■□□□□ 0.35
LDB3-203ENST00000372056 USP6P35125 1406 aa17.25■□□□□ 0.35
LDB3-203ENST00000372056 WDR43Q15061 677 aaKnown RBP eCLIP17.25■□□□□ 0.35
LDB3-203ENST00000372056 PHF8Q9UPP1 1060 aa17.25■□□□□ 0.35
LDB3-203ENST00000372056 KIF20BQ96Q89 1820 aa17.25■□□□□ 0.35
LDB3-203ENST00000372056 CFAP53Q96M91 514 aa17.24■□□□□ 0.35
LDB3-203ENST00000372056 COG3Q96JB2 828 aa17.23■□□□□ 0.35
LDB3-203ENST00000372056 TTC21BQ7Z4L5 1316 aa17.22■□□□□ 0.35
LDB3-203ENST00000372056 KIF1AQ12756 1690 aa17.22■□□□□ 0.35
LDB3-203ENST00000372056 STRCP1A6NGW2 1772 aa17.22■□□□□ 0.35
LDB3-203ENST00000372056 PDE3BQ13370 1112 aa17.22■□□□□ 0.35
LDB3-203ENST00000372056 SSH2Q76I76 1423 aa17.21■□□□□ 0.35
LDB3-203ENST00000372056 AATKQ6ZMQ8 1374 aa17.21■□□□□ 0.35
LDB3-203ENST00000372056 NUTM2FA1L443 756 aa17.2■□□□□ 0.34
LDB3-203ENST00000372056 ESCO1Q5FWF5 840 aa17.2■□□□□ 0.34
LDB3-203ENST00000372056 LRRC7Q96NW7 1537 aa17.2■□□□□ 0.34
LDB3-203ENST00000372056 RGPD8O14715 1765 aaPredicted RBP17.19■□□□□ 0.34
LDB3-203ENST00000372056 NRKQ7Z2Y5 1582 aa17.19■□□□□ 0.34
LDB3-203ENST00000372056 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.19■□□□□ 0.34
LDB3-203ENST00000372056 SALL2Q9Y467 1007 aaPredicted RBP17.19■□□□□ 0.34
LDB3-203ENST00000372056 USP31Q70CQ4 1352 aa17.19■□□□□ 0.34
LDB3-203ENST00000372056 C1orf167Q5SNV9 1468 aa17.19■□□□□ 0.34
LDB3-203ENST00000372056 PSME1Q06323 249 aa17.18■□□□□ 0.34
LDB3-203ENST00000372056 ERICH6BQ5W0A0 696 aa17.18■□□□□ 0.34
LDB3-203ENST00000372056 PMFBP1Q8TBY8 1022 aa17.18■□□□□ 0.34
LDB3-203ENST00000372056 GGNBP2Q9H3C7 697 aa17.18■□□□□ 0.34
LDB3-203ENST00000372056 IRX6P78412 446 aaPredicted RBP17.18■□□□□ 0.34
LDB3-203ENST00000372056 RNF123Q5XPI4 1314 aa17.18■□□□□ 0.34
LDB3-203ENST00000372056 ZNF335Q9H4Z2 1342 aaPredicted RBP17.17■□□□□ 0.34
LDB3-203ENST00000372056 TNNT2P45379 298 aaPredicted RBP17.16■□□□□ 0.34
LDB3-203ENST00000372056 NGEFQ8N5V2 710 aa17.16■□□□□ 0.34
LDB3-203ENST00000372056 MST1RQ04912 1400 aa17.16■□□□□ 0.34
LDB3-203ENST00000372056 SHPRHQ149N8 1683 aa17.14■□□□□ 0.33
LDB3-203ENST00000372056 MTHFSP49914 203 aa17.14■□□□□ 0.33
LDB3-203ENST00000372056 RBM33Q96EV2 1170 aaKnown RBP17.14■□□□□ 0.33
LDB3-203ENST00000372056 PNNQ9H307 717 aaKnown RBP17.14■□□□□ 0.33
LDB3-203ENST00000372056 NPHP3Q7Z494 1330 aa17.14■□□□□ 0.33
LDB3-203ENST00000372056 USP54Q70EL1 1684 aa17.13■□□□□ 0.33
LDB3-203ENST00000372056 KIF24Q5T7B8 1368 aa17.13■□□□□ 0.33
LDB3-203ENST00000372056 NME9Q86XW9 330 aa17.13■□□□□ 0.33
LDB3-203ENST00000372056 CDCA7LQ96GN5 454 aa17.13■□□□□ 0.33
LDB3-203ENST00000372056 OVOS2A0A0J9YW53 1432 aa17.13■□□□□ 0.33
LDB3-203ENST00000372056 OVOS2Q6IE36 1432 aa17.13■□□□□ 0.33
LDB3-203ENST00000372056 XIRP1Q702N8 1843 aaKnown RBP17.12■□□□□ 0.33
LDB3-203ENST00000372056 ZNF521Q96K83 1311 aa17.12■□□□□ 0.33
LDB3-203ENST00000372056 PNPLA6Q8IY17 1366 aa17.11■□□□□ 0.33
LDB3-203ENST00000372056 KCNH5Q8NCM2 988 aa17.11■□□□□ 0.33
LDB3-203ENST00000372056 CCDC146Q8IYE0 955 aa17.1■□□□□ 0.33
LDB3-203ENST00000372056 ABTB2Q8N961 1025 aa17.1■□□□□ 0.33
LDB3-203ENST00000372056 SLAIN2Q9P270 581 aa17.1■□□□□ 0.33
LDB3-203ENST00000372056 ORAI2Q96SN7 254 aa17.1■□□□□ 0.33
LDB3-203ENST00000372056 SBNO1A3KN83 1393 aa17.09■□□□□ 0.33
LDB3-203ENST00000372056 NLRP6P59044 892 aa17.09■□□□□ 0.33
LDB3-203ENST00000372056 KRT28Q7Z3Y7 464 aa17.09■□□□□ 0.33
LDB3-203ENST00000372056 PAK3O75914 559 aaPredicted RBP17.08■□□□□ 0.33
LDB3-203ENST00000372056 NCBP3Q53F19 620 aaKnown RBP17.08■□□□□ 0.33
LDB3-203ENST00000372056 POLKQ9UBT6 870 aa17.08■□□□□ 0.33
LDB3-203ENST00000372056 CDK12Q9NYV4 1490 aaPredicted RBP17.08■□□□□ 0.32
LDB3-203ENST00000372056 FOXO3O43524 673 aa17.07■□□□□ 0.32
LDB3-203ENST00000372056 RCAN3Q9UKA8 241 aa17.07■□□□□ 0.32
LDB3-203ENST00000372056 APAF1O14727 1248 aa17.07■□□□□ 0.32
LDB3-203ENST00000372056 PPP4R2Q9NY27 417 aa17.07■□□□□ 0.32
LDB3-203ENST00000372056 DIAPH1O60610 1272 aaKnown RBP17.06■□□□□ 0.32
LDB3-203ENST00000372056 MAP2P11137 1827 aaKnown RBP17.06■□□□□ 0.32
LDB3-203ENST00000372056 COL3A1P02461 1466 aaPredicted RBP17.05■□□□□ 0.32
LDB3-203ENST00000372056 PIK3C2AO00443 1686 aa17.05■□□□□ 0.32
LDB3-203ENST00000372056 LTBP4Q8N2S1 1624 aa17.05■□□□□ 0.32
LDB3-203ENST00000372056 GOLGA2Q08379 1002 aa17.04■□□□□ 0.32
LDB3-203ENST00000372056 ARHGEF10O15013 1369 aa17.04■□□□□ 0.32
LDB3-203ENST00000372056 IQSEC2Q5JU85 1478 aa17.03■□□□□ 0.32
LDB3-203ENST00000372056 RRP1P56182 461 aaKnown RBP17.03■□□□□ 0.32
LDB3-203ENST00000372056 DUSP27Q5VZP5 1158 aa17.03■□□□□ 0.32
LDB3-203ENST00000372056 RUNDC1Q96C34 613 aa17.03■□□□□ 0.32
LDB3-203ENST00000372056 NEFMP07197 916 aa17.02■□□□□ 0.32
LDB3-203ENST00000372056 BRINP3Q76B58 766 aa17.02■□□□□ 0.32
LDB3-203ENST00000372056 RTL1A6NKG5 1358 aa17.02■□□□□ 0.31
LDB3-203ENST00000372056 TRPM3Q9HCF6 1732 aaPredicted RBP17.02■□□□□ 0.31
LDB3-203ENST00000372056 SLFN5Q08AF3 891 aa17.01■□□□□ 0.31
LDB3-203ENST00000372056 FLT4P35916 1363 aa17.01■□□□□ 0.31
LDB3-203ENST00000372056 FCHSD2O94868 740 aa17■□□□□ 0.31
LDB3-203ENST00000372056 ZRANB1Q9UGI0 708 aa17■□□□□ 0.31
LDB3-203ENST00000372056 USP19O94966 1318 aa16.99■□□□□ 0.31
LDB3-203ENST00000372056 TRMT2AQ8IZ69 625 aaKnown RBP16.99■□□□□ 0.31
LDB3-203ENST00000372056 TNS3Q68CZ2 1445 aa16.99■□□□□ 0.31
LDB3-203ENST00000372056 SOS2Q07890 1332 aaPredicted RBP16.99■□□□□ 0.31
LDB3-203ENST00000372056 PPM1GO15355 546 aaPredicted RBP16.99■□□□□ 0.31
LDB3-203ENST00000372056 U2AF1L5P0DN76 240 aaPredicted RBP16.99■□□□□ 0.31
LDB3-203ENST00000372056 AMPHP49418 695 aa16.99■□□□□ 0.31
LDB3-203ENST00000372056 U2AF1Q01081 240 aaKnown RBP eCLIP16.99■□□□□ 0.31
LDB3-203ENST00000372056 TOM1O60784 492 aa16.98■□□□□ 0.31
LDB3-203ENST00000372056 SLIT3O75094 1523 aa16.98■□□□□ 0.31
LDB3-203ENST00000372056 PXDNQ92626 1479 aa16.98■□□□□ 0.31
LDB3-203ENST00000372056 SPATA31A3Q5VYP0 1347 aa16.97■□□□□ 0.31
LDB3-203ENST00000372056 TCP11L2Q8N4U5 519 aa16.97■□□□□ 0.31
LDB3-203ENST00000372056 PHF23Q9BUL5 403 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms