RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 MPHOSPH9Q99550 1183 aa5.47□□□□□ -1.53
MCF2-203ENST00000370576 MAMSTRQ6ZN01 415 aa5.46□□□□□ -1.53
MCF2-203ENST00000370576 N4BP2Q86UW6 1770 aaPredicted RBP5.46□□□□□ -1.53
MCF2-203ENST00000370576 SETQ01105 290 aaPredicted RBP5.46□□□□□ -1.54
MCF2-203ENST00000370576 POLR3GLQ9BT43 218 aa5.46□□□□□ -1.54
MCF2-203ENST00000370576 RPS6KL1Q9Y6S9 549 aa5.46□□□□□ -1.54
MCF2-203ENST00000370576 A2ML1A8K2U0 1454 aa5.46□□□□□ -1.54
MCF2-203ENST00000370576 ZNF326Q5BKZ1 582 aaKnown RBP5.46□□□□□ -1.54
MCF2-203ENST00000370576 SEMA3EO15041 775 aa5.45□□□□□ -1.54
MCF2-203ENST00000370576 PPM1GO15355 546 aaPredicted RBP5.45□□□□□ -1.54
MCF2-203ENST00000370576 SGIP1Q9BQI5 828 aa5.45□□□□□ -1.54
MCF2-203ENST00000370576 SMARCA5O60264 1052 aaPredicted RBP5.45□□□□□ -1.54
MCF2-203ENST00000370576 LMTK3Q96Q04 1460 aa5.45□□□□□ -1.54
MCF2-203ENST00000370576 PDE4DQ08499 809 aa5.45□□□□□ -1.54
MCF2-203ENST00000370576 TRPM3Q9HCF6 1732 aaPredicted RBP5.45□□□□□ -1.54
MCF2-203ENST00000370576 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.45□□□□□ -1.54
MCF2-203ENST00000370576 NPC1L1Q9UHC9 1359 aa5.45□□□□□ -1.54
MCF2-203ENST00000370576 TULP4Q9NRJ4 1543 aa5.44□□□□□ -1.54
MCF2-203ENST00000370576 STRCP1A6NGW2 1772 aa5.44□□□□□ -1.54
MCF2-203ENST00000370576 ADAMTS7Q9UKP4 1686 aa5.44□□□□□ -1.54
MCF2-203ENST00000370576 CEP170BQ9Y4F5 1589 aaPredicted RBP5.44□□□□□ -1.54
MCF2-203ENST00000370576 DNAJC14Q6Y2X3 702 aaPredicted RBP5.44□□□□□ -1.54
MCF2-203ENST00000370576 STRCQ7RTU9 1775 aa5.44□□□□□ -1.54
MCF2-203ENST00000370576 LMO7Q8WWI1 1683 aa5.43□□□□□ -1.54
MCF2-203ENST00000370576 PROSER2Q86WR7 435 aaPredicted RBP5.43□□□□□ -1.54
MCF2-203ENST00000370576 EVI5LQ96CN4 794 aa5.43□□□□□ -1.54
MCF2-203ENST00000370576 ABCC6O95255 1503 aa5.43□□□□□ -1.54
MCF2-203ENST00000370576 FAM43BQ6ZT52 329 aaPredicted RBP5.43□□□□□ -1.54
MCF2-203ENST00000370576 GPR37O15354 613 aa5.43□□□□□ -1.54
MCF2-203ENST00000370576 ANKRD13AQ8IZ07 590 aa5.43□□□□□ -1.54
MCF2-203ENST00000370576 PPME1Q9Y570 386 aa5.43□□□□□ -1.54
MCF2-203ENST00000370576 SCAF11Q99590 1463 aaKnown RBP5.43□□□□□ -1.54
MCF2-203ENST00000370576 SND1Q7KZF4 910 aaKnown RBP eCLIP5.42□□□□□ -1.54
MCF2-203ENST00000370576 POM121Q96HA1 1249 aa5.42□□□□□ -1.54
MCF2-203ENST00000370576 ANO8Q9HCE9 1232 aaPredicted RBP5.42□□□□□ -1.54
MCF2-203ENST00000370576 RPGRIP1LQ68CZ1 1315 aa5.42□□□□□ -1.54
MCF2-203ENST00000370576 KTN1Q86UP2 1357 aaKnown RBP5.42□□□□□ -1.54
MCF2-203ENST00000370576 PATL2C9JE40 543 aaKnown RBP5.42□□□□□ -1.54
MCF2-203ENST00000370576 ZNF662Q6ZS27 426 aa5.42□□□□□ -1.54
MCF2-203ENST00000370576 TMTC2Q8N394 836 aa5.42□□□□□ -1.54
MCF2-203ENST00000370576 TBC1D12O60347 775 aa5.41□□□□□ -1.54
MCF2-203ENST00000370576 CCDC144AA2RUR9 1427 aa5.41□□□□□ -1.54
MCF2-203ENST00000370576 SMG6Q86US8 1419 aaKnown RBP5.41□□□□□ -1.54
MCF2-203ENST00000370576 MARCH6O60337 910 aa5.41□□□□□ -1.54
MCF2-203ENST00000370576 HIRIP3Q9BW71 556 aaPredicted RBP5.41□□□□□ -1.54
MCF2-203ENST00000370576 PRDM10Q9NQV6 1147 aa5.41□□□□□ -1.54
MCF2-203ENST00000370576 ABCA3Q99758 1704 aa5.41□□□□□ -1.54
MCF2-203ENST00000370576 OXER1Q8TDS5 423 aa5.41□□□□□ -1.54
MCF2-203ENST00000370576 CD163L1Q9NR16 1453 aa5.4□□□□□ -1.54
MCF2-203ENST00000370576 ILDR1Q86SU0 546 aaPredicted RBP5.4□□□□□ -1.54
MCF2-203ENST00000370576 WDR70Q9NW82 654 aa5.4□□□□□ -1.54
MCF2-203ENST00000370576 CNPY4Q8N129 248 aa5.4□□□□□ -1.55
MCF2-203ENST00000370576 DRC1Q96MC2 740 aa5.4□□□□□ -1.55
MCF2-203ENST00000370576 LRRC37A3O60309 1634 aa5.4□□□□□ -1.55
MCF2-203ENST00000370576 ALS2Q96Q42 1657 aa5.4□□□□□ -1.55
MCF2-203ENST00000370576 WNK3Q9BYP7 1800 aa5.4□□□□□ -1.55
MCF2-203ENST00000370576 PTCH1Q13635 1447 aa5.4□□□□□ -1.55
MCF2-203ENST00000370576 FAM135BQ49AJ0 1406 aa5.4□□□□□ -1.55
MCF2-203ENST00000370576 HNRNPMP52272 730 aaKnown RBP eCLIP5.39□□□□□ -1.55
MCF2-203ENST00000370576 GIMAP6Q6P9H5 292 aa5.39□□□□□ -1.55
MCF2-203ENST00000370576 ZNF777Q9ULD5 760 aaPredicted RBP5.39□□□□□ -1.55
MCF2-203ENST00000370576 PIK3C2AO00443 1686 aa5.39□□□□□ -1.55
MCF2-203ENST00000370576 KIF1AQ12756 1690 aa5.39□□□□□ -1.55
MCF2-203ENST00000370576 SPAG9O60271 1321 aaKnown RBP5.39□□□□□ -1.55
MCF2-203ENST00000370576 KDM4FA0A1W2PPD8 638 aa5.39□□□□□ -1.55
MCF2-203ENST00000370576 VAMP1P23763 118 aa5.39□□□□□ -1.55
MCF2-203ENST00000370576 VIRMAQ69YN4 1812 aaKnown RBP5.39□□□□□ -1.55
MCF2-203ENST00000370576 PPFIA4O75335 1185 aa5.39□□□□□ -1.55
MCF2-203ENST00000370576 TCF3P15923 654 aa5.39□□□□□ -1.55
MCF2-203ENST00000370576 HSP90AB4PQ58FF6 505 aa5.39□□□□□ -1.55
MCF2-203ENST00000370576 ZNF219Q9P2Y4 722 aaPredicted RBP5.39□□□□□ -1.55
MCF2-203ENST00000370576 SCAF1Q9H7N4 1312 aaKnown RBP5.38□□□□□ -1.55
MCF2-203ENST00000370576 CYB5RLQ6IPT4 315 aa5.38□□□□□ -1.55
MCF2-203ENST00000370576 GPATCH3Q96I76 525 aa5.38□□□□□ -1.55
MCF2-203ENST00000370576 DNAJC2Q99543 621 aaKnown RBP5.38□□□□□ -1.55
MCF2-203ENST00000370576 CICQ96RK0 1608 aaPredicted RBP5.38□□□□□ -1.55
MCF2-203ENST00000370576 MED1Q15648 1581 aaPredicted RBP5.38□□□□□ -1.55
MCF2-203ENST00000370576 ANAPC15P60006 121 aa5.38□□□□□ -1.55
MCF2-203ENST00000370576 NAP1L5Q96NT1 182 aaPredicted RBP5.38□□□□□ -1.55
MCF2-203ENST00000370576 SETD1BQ9UPS6 1966 aaKnown RBP5.38□□□□□ -1.55
MCF2-203ENST00000370576 COL3A1P02461 1466 aaPredicted RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 RIOK3O14730 519 aaKnown RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 C7P10643 843 aa5.37□□□□□ -1.55
MCF2-203ENST00000370576 FBXW7Q969H0 707 aa5.37□□□□□ -1.55
MCF2-203ENST00000370576 CDCA7Q9BWT1 371 aaPredicted RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 LAS1LQ9Y4W2 734 aaKnown RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 FAM208AQ9UK61 1670 aaKnown RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 NCLP19338 710 aaKnown RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 NBPF8Q3BBV2 869 aa5.37□□□□□ -1.55
MCF2-203ENST00000370576 SPTY2D1Q68D10 685 aaPredicted RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 RBM46Q8TBY0 533 aaKnown RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 SLC39A13Q96H72 371 aa5.37□□□□□ -1.55
MCF2-203ENST00000370576 GNEQ9Y223 722 aaKnown RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 SIPA1L3O60292 1781 aaPredicted RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 ADAMTS13Q76LX8 1427 aa5.37□□□□□ -1.55
MCF2-203ENST00000370576 ROCK2O75116 1388 aaKnown RBP5.37□□□□□ -1.55
MCF2-203ENST00000370576 MCCP23508 829 aa5.37□□□□□ -1.55
MCF2-203ENST00000370576 LARGE2Q8N3Y3 721 aa5.37□□□□□ -1.55
MCF2-203ENST00000370576 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.37□□□□□ -1.55
MCF2-203ENST00000370576 CCDC7Q96M83 1385 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms