RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 ABCA8O94911 1581 aa5.46□□□□□ -1.53
MCF2-202ENST00000370573 KDM4AO75164 1064 aa5.46□□□□□ -1.54
MCF2-202ENST00000370573 SPSB2Q99619 263 aa5.46□□□□□ -1.54
MCF2-202ENST00000370573 TMUB1Q9BVT8 246 aa5.46□□□□□ -1.54
MCF2-202ENST00000370573 C1orf115Q9H7X2 142 aa5.46□□□□□ -1.54
MCF2-202ENST00000370573 NUP153P49790 1475 aaKnown RBP5.46□□□□□ -1.54
MCF2-202ENST00000370573 MAP3K1Q13233 1512 aa5.46□□□□□ -1.54
MCF2-202ENST00000370573 TIAM1Q13009 1591 aa5.46□□□□□ -1.54
MCF2-202ENST00000370573 RAPGEF6Q8TEU7 1601 aa5.46□□□□□ -1.54
MCF2-202ENST00000370573 GUCA2AQ02747 115 aa5.46□□□□□ -1.54
MCF2-202ENST00000370573 GIGYF2Q6Y7W6 1299 aaKnown RBP5.46□□□□□ -1.54
MCF2-202ENST00000370573 AK7Q96M32 723 aa5.46□□□□□ -1.54
MCF2-202ENST00000370573 ZMYND15Q9H091 742 aa5.46□□□□□ -1.54
MCF2-202ENST00000370573 EPRSP07814 1512 aaKnown RBP5.45□□□□□ -1.54
MCF2-202ENST00000370573 RNF223E7ERA6 249 aa5.45□□□□□ -1.54
MCF2-202ENST00000370573 PRKD2Q9BZL6 878 aa5.45□□□□□ -1.54
MCF2-202ENST00000370573 UACAQ9BZF9 1416 aa5.45□□□□□ -1.54
MCF2-202ENST00000370573 RNF19BQ6ZMZ0 732 aa5.45□□□□□ -1.54
MCF2-202ENST00000370573 PARP9Q8IXQ6 854 aa5.45□□□□□ -1.54
MCF2-202ENST00000370573 CDK13Q14004 1512 aaKnown RBP5.44□□□□□ -1.54
MCF2-202ENST00000370573 HECW1Q76N89 1606 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 GGCXP38435 758 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 AMHR2Q16671 573 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 IL27Q8NEV9 243 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 LRRC9Q6ZRR7 1453 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 ARHGEF11O15085 1522 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 CFAP43Q8NDM7 1665 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 ADH1BP00325 375 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 SLC6A16Q9GZN6 736 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 ATP10BO94823 1461 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 MAGI3Q5TCQ9 1506 aa5.44□□□□□ -1.54
MCF2-202ENST00000370573 NUTM1Q86Y26 1132 aa5.43□□□□□ -1.54
MCF2-202ENST00000370573 SYMPKQ92797 1274 aaKnown RBP5.43□□□□□ -1.54
MCF2-202ENST00000370573 THAP11Q96EK4 314 aa5.43□□□□□ -1.54
MCF2-202ENST00000370573 PRDM9Q9NQV7 894 aa5.43□□□□□ -1.54
MCF2-202ENST00000370573 CCDC18Q5T9S5 1454 aa5.43□□□□□ -1.54
MCF2-202ENST00000370573 UHRF1BP1LA0JNW5 1464 aa5.43□□□□□ -1.54
MCF2-202ENST00000370573 GRIPAP1Q4V328 841 aa5.43□□□□□ -1.54
MCF2-202ENST00000370573 ARID3AQ99856 593 aa5.43□□□□□ -1.54
MCF2-202ENST00000370573 BEGAINQ9BUH8 593 aa5.43□□□□□ -1.54
MCF2-202ENST00000370573 ABCC2Q92887 1545 aa5.42□□□□□ -1.54
MCF2-202ENST00000370573 FMNL1O95466 1100 aaPredicted RBP5.42□□□□□ -1.54
MCF2-202ENST00000370573 MS4A1P11836 297 aa5.42□□□□□ -1.54
MCF2-202ENST00000370573 PDE4DQ08499 809 aa5.42□□□□□ -1.54
MCF2-202ENST00000370573 FAM160A2Q8N612 972 aaPredicted RBP5.42□□□□□ -1.54
MCF2-202ENST00000370573 RIMBP3CA6NJZ7 1639 aa5.42□□□□□ -1.54
MCF2-202ENST00000370573 RIMBP3BA6NNM3 1639 aa5.42□□□□□ -1.54
MCF2-202ENST00000370573 RIMBP3Q9UFD9 1639 aa5.42□□□□□ -1.54
MCF2-202ENST00000370573 HOXA2O43364 376 aa5.42□□□□□ -1.54
MCF2-202ENST00000370573 RGS20O76081 388 aa5.42□□□□□ -1.54
MCF2-202ENST00000370573 BRICD5Q6PL45 260 aa5.42□□□□□ -1.54
MCF2-202ENST00000370573 MTUS2Q5JR59 1369 aa5.41□□□□□ -1.54
MCF2-202ENST00000370573 NDUFV2P19404 249 aa5.41□□□□□ -1.54
MCF2-202ENST00000370573 RSPH6AQ9H0K4 717 aa5.41□□□□□ -1.54
MCF2-202ENST00000370573 ADCY10Q96PN6 1610 aa5.41□□□□□ -1.54
MCF2-202ENST00000370573 PLA2G2CQ5R387 149 aa5.41□□□□□ -1.54
MCF2-202ENST00000370573 CYB5RLQ6IPT4 315 aa5.41□□□□□ -1.54
MCF2-202ENST00000370573 SPIRE2Q8WWL2 714 aa5.41□□□□□ -1.54
MCF2-202ENST00000370573 EMID1Q96A84 441 aaPredicted RBP5.41□□□□□ -1.54
MCF2-202ENST00000370573 IRX2Q9BZI1 471 aaPredicted RBP5.41□□□□□ -1.54
MCF2-202ENST00000370573 KDM5BQ9UGL1 1544 aa5.4□□□□□ -1.54
MCF2-202ENST00000370573 NPM2Q86SE8 214 aaKnown RBP5.4□□□□□ -1.54
MCF2-202ENST00000370573 PHLDB1Q86UU1 1377 aa5.4□□□□□ -1.55
MCF2-202ENST00000370573 PLEKHD1A6NEE1 506 aa5.4□□□□□ -1.55
MCF2-202ENST00000370573 PCGF6Q9BYE7 350 aa5.4□□□□□ -1.55
MCF2-202ENST00000370573 CDK11AQ9UQ88 783 aaPredicted RBP5.4□□□□□ -1.55
MCF2-202ENST00000370573 EHBP1L1Q8N3D4 1523 aa5.39□□□□□ -1.55
MCF2-202ENST00000370573 MOXD2PA6NHM9 499 aa5.39□□□□□ -1.55
MCF2-202ENST00000370573 SLC19A1P41440 591 aa5.39□□□□□ -1.55
MCF2-202ENST00000370573 USP46P62068 366 aa5.39□□□□□ -1.55
MCF2-202ENST00000370573 ANKLE1Q8NAG6 615 aa5.39□□□□□ -1.55
MCF2-202ENST00000370573 KDM4CQ9H3R0 1056 aa5.39□□□□□ -1.55
MCF2-202ENST00000370573 PCDHGC3Q9UN70 934 aa5.39□□□□□ -1.55
MCF2-202ENST00000370573 FCF1Q9Y324 198 aaKnown RBP5.39□□□□□ -1.55
MCF2-202ENST00000370573 TROQ12816 1431 aaPredicted RBP5.39□□□□□ -1.55
MCF2-202ENST00000370573 NCOA2Q15596 1464 aa5.39□□□□□ -1.55
MCF2-202ENST00000370573 ZCCHC11Q5TAX3 1644 aaKnown RBP5.39□□□□□ -1.55
MCF2-202ENST00000370573 LIAT1Q6ZQX7 453 aa5.39□□□□□ -1.55
MCF2-202ENST00000370573 FDX1P10109 184 aa5.38□□□□□ -1.55
MCF2-202ENST00000370573 Q3C1V9 767 aa5.38□□□□□ -1.55
MCF2-202ENST00000370573 C6orf229H3BNL8 230 aa5.38□□□□□ -1.55
MCF2-202ENST00000370573 USB1Q9BQ65 265 aaKnown RBP5.38□□□□□ -1.55
MCF2-202ENST00000370573 TBC1D2Q9BYX2 928 aa5.38□□□□□ -1.55
MCF2-202ENST00000370573 SALL2Q9Y467 1007 aaPredicted RBP5.38□□□□□ -1.55
MCF2-202ENST00000370573 KIF14Q15058 1648 aa5.37□□□□□ -1.55
MCF2-202ENST00000370573 SUPT6HQ7KZ85 1726 aaKnown RBP5.37□□□□□ -1.55
MCF2-202ENST00000370573 V9GY48 417 aaPredicted RBP5.37□□□□□ -1.55
MCF2-202ENST00000370573 RRBP1Q9P2E9 1410 aaKnown RBP5.37□□□□□ -1.55
MCF2-202ENST00000370573 GFRA3O60609 400 aa5.37□□□□□ -1.55
MCF2-202ENST00000370573 CSPP1Q1MSJ5 1256 aa5.37□□□□□ -1.55
MCF2-202ENST00000370573 ABCC10Q5T3U5 1492 aa5.36□□□□□ -1.55
MCF2-202ENST00000370573 PCDHB15Q9Y5E8 787 aa5.36□□□□□ -1.55
MCF2-202ENST00000370573 MYOM3Q5VTT5 1437 aa5.36□□□□□ -1.55
MCF2-202ENST00000370573 ASXL2Q76L83 1435 aa5.36□□□□□ -1.55
MCF2-202ENST00000370573 CCNB3Q8WWL7 1395 aa5.36□□□□□ -1.55
MCF2-202ENST00000370573 SPRYD7Q5W111 196 aa5.36□□□□□ -1.55
MCF2-202ENST00000370573 CCDC24Q8N4L8 307 aa5.36□□□□□ -1.55
MCF2-202ENST00000370573 FGD6Q6ZV73 1430 aa5.35□□□□□ -1.55
MCF2-202ENST00000370573 GPATCH8Q9UKJ3 1502 aaKnown RBP5.35□□□□□ -1.55
MCF2-202ENST00000370573 MSS51Q4VC12 460 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms